Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:17:47 (300843): wrapper (7.7.26015): starting
10:17:47 (300843): wrapper: running run_atlas (--nthreads 3)
[2026-01-21 10:17:47] Arguments: --nthreads 3
[2026-01-21 10:17:47] Threads: 3
[2026-01-21 10:17:47] Checking for CVMFS
[2026-01-21 10:17:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-21 10:17:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-21 10:17:48] Running cvmfs_config stat atlas.cern.ch
[2026-01-21 10:17:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-21 10:17:48] 2.9.2.0 204975 270 54484 155379 2 49 12700280 36864001 0 130560 0 120029 99.974 13045 30266 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-21 10:17:48] CVMFS is ok
[2026-01-21 10:17:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-21 10:17:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-21 10:17:48] Further information can be found at the LHC@home message board.
[2026-01-21 10:17:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-21 10:17:48] Checking for apptainer binary...
[2026-01-21 10:17:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-21 10:17:48] Running /usr/bin/apptainer --version
[2026-01-21 10:17:48] apptainer version 1.4.1-1.1
[2026-01-21 10:17:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-21 10:17:48] atlasA221b
[2026-01-21 10:17:48] apptainer works
[2026-01-21 10:17:48] Set ATHENA_PROC_NUMBER=3
[2026-01-21 10:17:48] Set ATHENA_CORE_NUMBER=3
[2026-01-21 10:17:48] Starting ATLAS job with PandaID=6977079818
[2026-01-21 10:17:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:01:08 (7862): wrapper (7.7.26015): starting
11:01:08 (7862): wrapper: running run_atlas (--nthreads 3)
[2026-01-21 11:01:08] Arguments: --nthreads 3
[2026-01-21 11:01:08] Threads: 3
[2026-01-21 11:01:08] This job has been restarted, cleaning up previous attempt
[2026-01-21 11:01:08] Checking for CVMFS
[2026-01-21 11:01:11] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-21 11:01:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-21 11:01:12] Running cvmfs_config stat atlas.cern.ch
[2026-01-21 11:01:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-21 11:01:12] 2.9.2.0 8065 0 28776 155379 3 1 12702775 36864001 0 130560 0 0 100.000 0 0 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-21 11:01:12] CVMFS is ok
[2026-01-21 11:01:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-21 11:01:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-21 11:01:12] Further information can be found at the LHC@home message board.
[2026-01-21 11:01:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-21 11:01:12] Checking for apptainer binary...
[2026-01-21 11:01:12] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-21 11:01:12] Running /usr/bin/apptainer --version
[2026-01-21 11:01:12] apptainer version 1.4.1-1.1
[2026-01-21 11:01:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-21 11:01:13] atlasA221b
[2026-01-21 11:01:13] apptainer works
[2026-01-21 11:01:13] Set ATHENA_PROC_NUMBER=3
[2026-01-21 11:01:13] Set ATHENA_CORE_NUMBER=3
[2026-01-21 11:01:13] Starting ATLAS job with PandaID=6977079818
[2026-01-21 11:01:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
12:15:43 (41619): wrapper (7.7.26015): starting
12:15:43 (41619): wrapper: running run_atlas (--nthreads 3)
[2026-01-21 12:15:43] Arguments: --nthreads 3
[2026-01-21 12:15:43] Threads: 3
[2026-01-21 12:15:43] This job has been restarted, cleaning up previous attempt
[2026-01-21 12:15:44] Checking for CVMFS
[2026-01-21 12:15:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-21 12:15:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-21 12:15:45] Running cvmfs_config stat atlas.cern.ch
[2026-01-21 12:15:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-21 12:15:45] 2.9.2.0 41747 0 28924 155382 4 1 12711083 36864001 0 130560 0 0 0.000 1335 4405 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-21 12:15:45] CVMFS is ok
[2026-01-21 12:15:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-21 12:15:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-21 12:15:45] Further information can be found at the LHC@home message board.
[2026-01-21 12:15:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-21 12:15:45] Checking for apptainer binary...
[2026-01-21 12:15:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-21 12:15:45] Running /usr/bin/apptainer --version
[2026-01-21 12:15:45] apptainer version 1.4.1-1.1
[2026-01-21 12:15:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-21 12:15:46] atlasA221b
[2026-01-21 12:15:46] apptainer works
[2026-01-21 12:15:46] Set ATHENA_PROC_NUMBER=3
[2026-01-21 12:15:46] Set ATHENA_CORE_NUMBER=3
[2026-01-21 12:15:46] Starting ATLAS job with PandaID=6977079818
[2026-01-21 12:15:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-21 13:51:14]  *** The last 200 lines of the pilot log: ***
[2026-01-21 13:51:14] 2026-01-21 12:50:44,227 | INFO     | update_server=False
[2026-01-21 13:51:14] 2026-01-21 12:50:44,227 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-21 13:51:14] 2026-01-21 12:50:44,228 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-21 13:51:14] 2026-01-21 12:50:44,228 | INFO     | will abort loop
[2026-01-21 13:51:14] 2026-01-21 12:50:44,228 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-21 13:51:14] 2026-01-21 12:50:44,229 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-21 13:51:14] 2026-01-21 12:50:44,926 | INFO     | all payload control threads have been joined
[2026-01-21 13:51:14] 2026-01-21 12:50:44,973 | INFO     | all data control threads have been joined
[2026-01-21 13:51:14] 2026-01-21 12:50:45,233 | INFO     | [job] retrieve thread has finished
[2026-01-21 13:51:14] 2026-01-21 12:50:45,234 | INFO     | [job] queue monitor thread has finished
[2026-01-21 13:51:14] 2026-01-21 12:50:45,235 | INFO     | [job] job monitor thread has finished
[2026-01-21 13:51:14] 2026-01-21 12:50:45,454 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-21 13:51:14] 2026-01-21 12:50:45,484 | INFO     | all job control threads have been joined
[2026-01-21 13:51:14] 2026-01-21 12:50:45,767 | INFO     | [payload] execute_payloads thread has finished
[2026-01-21 13:51:14] 2026-01-21 12:50:45,932 | INFO     | [payload] control thread has finished
[2026-01-21 13:51:14] 2026-01-21 12:50:45,957 | INFO     | [job] validate thread has finished
[2026-01-21 13:51:14] 2026-01-21 12:50:45,979 | INFO     | [data] control thread has finished
[2026-01-21 13:51:14] 2026-01-21 12:50:45,988 | INFO     | [payload] validate_post thread has finished
[2026-01-21 13:51:14] 2026-01-21 12:50:46,149 | INFO     | [payload] validate_pre thread has finished
[2026-01-21 13:51:14] 2026-01-21 12:50:46,296 | INFO     | [job] create_data_payload thread has finished
[2026-01-21 13:51:14] 2026-01-21 12:50:46,407 | INFO     | [data] copytool_in thread has finished
[2026-01-21 13:51:14] 2026-01-21 12:50:46,490 | INFO     | [job] control thread has finished
[2026-01-21 13:51:14] 2026-01-21 12:50:46,581 | INFO     | [payload] failed_post thread has finished
[2026-01-21 13:51:14] 2026-01-21 12:50:47,460 | INFO     | [data] copytool_out thread has finished
[2026-01-21 13:51:14] 2026-01-21 12:50:48,235 | INFO     | [data] queue_monitor thread has finished
[2026-01-21 13:51:14] 2026-01-21 12:50:48,252 | INFO     | job.realtimelogging is not enabled
[2026-01-21 13:51:14] 2026-01-21 12:50:49,256 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-21 13:51:14] 2026-01-21 12:51:05,042 | INFO     | [monitor] cgroup control has ended
[2026-01-21 13:51:14] 2026-01-21 12:51:05,467 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140443962636096)>', '<ExcThread(monitor, started 140442813331200)>']
[2026-01-21 13:51:14] 2026-01-21 12:51:10,492 | INFO     | all workflow threads have been joined
[2026-01-21 13:51:14] 2026-01-21 12:51:10,492 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-21 13:51:14] 2026-01-21 12:51:10,493 | INFO     | traces error code: 0
[2026-01-21 13:51:14] 2026-01-21 12:51:10,493 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-21 13:51:14] 2026-01-21 12:51:14,771 | INFO     | PID=45846 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-21 13:51:14] 2026-01-21 12:51:14,772 | INFO     | found 0 job(s) in 20 queues
[2026-01-21 13:51:14] 2026-01-21 12:51:14,772 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-21 13:51:14] 2026-01-21 12:51:14,772 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-21 13:51:14] 2026-01-21 12:51:14,772 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-21 13:51:14] 2026-01-21 12:51:14,772 | INFO     | [monitor] control thread has ended
[2026-01-21 13:51:14] 2026-01-21 12:51:14,816 [wrapper] ==== pilot stdout END ====
[2026-01-21 13:51:14] 2026-01-21 12:51:14,819 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-21 13:51:14] 2026-01-21 12:51:14,822 [wrapper] pilotpid: 45846
[2026-01-21 13:51:14] 2026-01-21 12:51:14,825 [wrapper] Pilot exit status: 0
[2026-01-21 13:51:14] 2026-01-21 12:51:14,845 [wrapper] pandaids: 6977079818 6977079818 6977079818
[2026-01-21 13:51:14] 2026-01-21 12:51:14,863 [wrapper] cleanup supervisor_pilot   61137 45847
[2026-01-21 13:51:14] 2026-01-21 12:51:14,866 [wrapper] Test setup, not cleaning
[2026-01-21 13:51:14] 2026-01-21 12:51:14,868 [wrapper] apfmon messages muted
[2026-01-21 13:51:14] 2026-01-21 12:51:14,871 [wrapper] ==== wrapper stdout END ====
[2026-01-21 13:51:14] 2026-01-21 12:51:14,874 [wrapper] ==== wrapper stderr END ====
[2026-01-21 13:51:14]  *** Error codes and diagnostics ***
[2026-01-21 13:51:14]     "exeErrorCode": 0,
[2026-01-21 13:51:14]     "exeErrorDiag": "",
[2026-01-21 13:51:14]     "pilotErrorCode": 0,
[2026-01-21 13:51:14]     "pilotErrorDiag": "",
[2026-01-21 13:51:14]  *** Listing of results directory ***
[2026-01-21 13:51:14] total 1158372
[2026-01-21 13:51:14] drwx------ 5 boinc boinc      4096 Jan 14 11:00 pilot3
[2026-01-21 13:51:14] -rw-r--r-- 1 boinc boinc    584422 Jan 21 02:23 pilot3.tar.gz
[2026-01-21 13:51:14] -rwx------ 1 boinc boinc     36322 Jan 21 02:25 runpilot2-wrapper.sh
[2026-01-21 13:51:14] -rw-r--r-- 1 boinc boinc      5111 Jan 21 02:27 queuedata.json
[2026-01-21 13:51:14] -rw-r--r-- 1 boinc boinc       100 Jan 21 10:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-21 13:51:14] -rwxr-xr-x 1 boinc boinc      7986 Jan 21 10:17 run_atlas
[2026-01-21 13:51:14] -rw-r--r-- 1 boinc boinc       105 Jan 21 10:17 job.xml
[2026-01-21 13:51:14] -rw-r--r-- 3 boinc boinc 495320470 Jan 21 10:17 EVNT.48301084._000034.pool.root.1
[2026-01-21 13:51:14] -rw-r--r-- 3 boinc boinc 495320470 Jan 21 10:17 ATLAS.root_0
[2026-01-21 13:51:14] -rw-r--r-- 2 boinc boinc    597755 Jan 21 10:17 input.tar.gz
[2026-01-21 13:51:14] -rw-r--r-- 2 boinc boinc     15845 Jan 21 10:17 start_atlas.sh
[2026-01-21 13:51:14] drwxrwx--x 2 boinc boinc      4096 Jan 21 10:17 shared
[2026-01-21 13:51:14] -rw-r--r-- 1 boinc boinc         0 Jan 21 10:17 boinc_setup_complete
[2026-01-21 13:51:14] -rw-r--r-- 1 boinc boinc         0 Jan 21 10:17 boinc_lockfile
[2026-01-21 13:51:14] -rw-r--r-- 1 boinc boinc      6206 Jan 21 12:15 init_data.xml
[2026-01-21 13:51:14] -rw-r--r-- 1 boinc boinc      2519 Jan 21 12:15 pandaJob.out
[2026-01-21 13:51:14] -rw------- 1 boinc boinc   1002717 Jan 21 12:15 agis_schedconf.cvmfs.json
[2026-01-21 13:51:14] -rw------- 1 boinc boinc       430 Jan 21 12:15 workernode_map.json
[2026-01-21 13:51:14] -rw------- 1 boinc boinc 189430501 Jan 21 13:50 HITS.48301086._001665.pool.root.1
[2026-01-21 13:51:14] -rw------- 1 boinc boinc        97 Jan 21 13:50 pilot_heartbeat.json
[2026-01-21 13:51:14] -rw-r--r-- 1 boinc boinc       530 Jan 21 13:50 boinc_task_state.xml
[2026-01-21 13:51:14] -rw------- 1 boinc boinc      1050 Jan 21 13:50 memory_monitor_summary.json
[2026-01-21 13:51:14] -rw------- 1 boinc boinc   1516246 Jan 21 13:50 agis_ddmendpoints.agis.ALL.json
[2026-01-21 13:51:14] -rw------- 1 boinc boinc    269345 Jan 21 13:50 log.48301086._001665.job.log.tgz.1
[2026-01-21 13:51:14] -rw------- 1 boinc boinc      6352 Jan 21 13:50 heartbeat.json
[2026-01-21 13:51:14] -rw-r--r-- 1 boinc boinc        27 Jan 21 13:50 wrapper_checkpoint.txt
[2026-01-21 13:51:14] -rw-r--r-- 1 boinc boinc      8192 Jan 21 13:50 boinc_mmap_file
[2026-01-21 13:51:14] -rw------- 1 boinc boinc       745 Jan 21 13:51 pilotlog.txt
[2026-01-21 13:51:14] -rw------- 1 boinc boinc    823205 Jan 21 13:51 log.48301086._001665.job.log.1
[2026-01-21 13:51:14] -rw------- 1 boinc boinc       357 Jan 21 13:51 output.list
[2026-01-21 13:51:14] -rw-r--r-- 1 boinc boinc       620 Jan 21 13:51 runtime_log
[2026-01-21 13:51:14] -rw------- 1 boinc boinc   1105920 Jan 21 13:51 result.tar.gz
[2026-01-21 13:51:14] -rw-r--r-- 1 boinc boinc      9001 Jan 21 13:51 runtime_log.err
[2026-01-21 13:51:14] -rw------- 1 boinc boinc       914 Jan 21 13:51 5QINDmg9b28n9Rq4apOajLDm4fhM0noT9bVo0NGKDmStqKDm3PzXvn.diag
[2026-01-21 13:51:14] -rw-r--r-- 1 boinc boinc     11737 Jan 21 13:51 stderr.txt
[2026-01-21 13:51:14] HITS file was successfully produced:
[2026-01-21 13:51:14] -rw------- 1 boinc boinc 189430501 Jan 21 13:50 shared/HITS.pool.root.1
[2026-01-21 13:51:14]  *** Contents of shared directory: ***
[2026-01-21 13:51:14] total 670392
[2026-01-21 13:51:14] -rw-r--r-- 3 boinc boinc 495320470 Jan 21 10:17 ATLAS.root_0
[2026-01-21 13:51:14] -rw-r--r-- 2 boinc boinc    597755 Jan 21 10:17 input.tar.gz
[2026-01-21 13:51:14] -rw-r--r-- 2 boinc boinc     15845 Jan 21 10:17 start_atlas.sh
[2026-01-21 13:51:14] -rw------- 1 boinc boinc 189430501 Jan 21 13:50 HITS.pool.root.1
[2026-01-21 13:51:14] -rw------- 1 boinc boinc   1105920 Jan 21 13:51 result.tar.gz
13:51:16 (41619): run_atlas exited; CPU time 16315.795273
13:51:16 (41619): called boinc_finish(0)

</stderr_txt>
]]>

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