Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:34:20 (2467465): wrapper (7.7.26015): starting
13:34:20 (2467465): wrapper: running run_atlas (--nthreads 3)
[2026-01-21 13:34:20] Arguments: --nthreads 3
[2026-01-21 13:34:20] Threads: 3
[2026-01-21 13:34:20] Checking for CVMFS
[2026-01-21 13:34:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-21 13:34:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-21 13:34:21] Running cvmfs_config stat atlas.cern.ch
[2026-01-21 13:34:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-21 13:34:21] 2.9.2.0 2268285 1030 71472 155385 0 49 23182137 36864001 0 130560 0 518107 99.981 39454 13396 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-21 13:34:21] CVMFS is ok
[2026-01-21 13:34:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-21 13:34:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-21 13:34:21] Further information can be found at the LHC@home message board.
[2026-01-21 13:34:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-21 13:34:21] Checking for apptainer binary...
[2026-01-21 13:34:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-21 13:34:21] Running /usr/bin/apptainer --version
[2026-01-21 13:34:21] apptainer version 1.4.1-1.1
[2026-01-21 13:34:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-21 13:34:21] magicA246a
[2026-01-21 13:34:21] apptainer works
[2026-01-21 13:34:21] Set ATHENA_PROC_NUMBER=3
[2026-01-21 13:34:21] Set ATHENA_CORE_NUMBER=3
[2026-01-21 13:34:21] Starting ATLAS job with PandaID=6977078104
[2026-01-21 13:34:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-21 14:52:51]  *** The last 200 lines of the pilot log: ***
[2026-01-21 14:52:51] 2026-01-21 13:52:20,511 | INFO     | process IDs to be killed: [2475919] (in reverse order)
[2026-01-21 14:52:51] 2026-01-21 13:52:20,540 | WARNING  | found no corresponding commands to process id(s)
[2026-01-21 14:52:51] 2026-01-21 13:52:20,540 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-21 14:52:51] 2026-01-21 13:52:20,542 | INFO     | did not find any defunct processes belonging to 2475919
[2026-01-21 14:52:51] 2026-01-21 13:52:20,543 | INFO     | did not find any defunct processes belonging to 2475919
[2026-01-21 14:52:51] 2026-01-21 13:52:20,544 | INFO     | ready for new job
[2026-01-21 14:52:51] 2026-01-21 13:52:20,544 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-21 14:52:51] 2026-01-21 13:52:20,544 | INFO     | **************************************
[2026-01-21 14:52:51] 2026-01-21 13:52:20,544 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-21 14:52:51] 2026-01-21 13:52:20,544 | INFO     | **************************************
[2026-01-21 14:52:51] 2026-01-21 13:52:20,544 | INFO     | 
[2026-01-21 14:52:51] 2026-01-21 13:52:20,545 | INFO     | architecture information:
[2026-01-21 14:52:51] 2026-01-21 13:52:20,545 | INFO     | executing command: cat /etc/os-release
[2026-01-21 14:52:51] 2026-01-21 13:52:20,553 | INFO     | cat /etc/os-release:
[2026-01-21 14:52:51] NAME="CentOS Linux"
[2026-01-21 14:52:51] VERSION="7 (Core)"
[2026-01-21 14:52:51] ID="centos"
[2026-01-21 14:52:51] ID_LIKE="rhel fedora"
[2026-01-21 14:52:51] VERSION_ID="7"
[2026-01-21 14:52:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-21 14:52:51] ANSI_COLOR="0;31"
[2026-01-21 14:52:51] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-21 14:52:51] HOME_URL="https://www.centos.org/"
[2026-01-21 14:52:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-21 14:52:51] 
[2026-01-21 14:52:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-21 14:52:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-21 14:52:51] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-21 14:52:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-21 14:52:51] 
[2026-01-21 14:52:51] 2026-01-21 13:52:20,554 | INFO     | **************************************
[2026-01-21 14:52:51] 2026-01-21 13:52:21,057 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-21 14:52:51] 2026-01-21 13:52:21,069 | INFO     | sufficient remaining disk space (279764271104 B)
[2026-01-21 14:52:51] 2026-01-21 13:52:21,069 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-21 14:52:51] 2026-01-21 13:52:21,069 | INFO     | current server update state: UPDATING_FINAL
[2026-01-21 14:52:51] 2026-01-21 13:52:21,069 | INFO     | update_server=False
[2026-01-21 14:52:51] 2026-01-21 13:52:21,069 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-21 14:52:51] 2026-01-21 13:52:21,069 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-21 14:52:51] 2026-01-21 13:52:21,069 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-21 14:52:51] 2026-01-21 13:52:21,410 | INFO     | all job control threads have been joined
[2026-01-21 14:52:51] 2026-01-21 13:52:21,506 | INFO     | all data control threads have been joined
[2026-01-21 14:52:51] 2026-01-21 13:52:21,592 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-21 14:52:51] 2026-01-21 13:52:21,592 | INFO     | aborting loop
[2026-01-21 14:52:51] 2026-01-21 13:52:22,075 | INFO     | [job] retrieve thread has finished
[2026-01-21 14:52:51] 2026-01-21 13:52:22,075 | INFO     | [job] queue monitor thread has finished
[2026-01-21 14:52:51] 2026-01-21 13:52:22,148 | INFO     | all payload control threads have been joined
[2026-01-21 14:52:51] 2026-01-21 13:52:22,161 | INFO     | [payload] validate_pre thread has finished
[2026-01-21 14:52:51] 2026-01-21 13:52:22,172 | INFO     | [data] copytool_in thread has finished
[2026-01-21 14:52:51] 2026-01-21 13:52:22,416 | INFO     | [job] control thread has finished
[2026-01-21 14:52:51] 2026-01-21 13:52:22,512 | INFO     | [data] control thread has finished
[2026-01-21 14:52:51] 2026-01-21 13:52:22,597 | INFO     | [job] job monitor thread has finished
[2026-01-21 14:52:51] 2026-01-21 13:52:22,783 | INFO     | [payload] failed_post thread has finished
[2026-01-21 14:52:51] 2026-01-21 13:52:22,861 | INFO     | [payload] execute_payloads thread has finished
[2026-01-21 14:52:51] 2026-01-21 13:52:23,073 | INFO     | [data] copytool_out thread has finished
[2026-01-21 14:52:51] 2026-01-21 13:52:23,154 | INFO     | [payload] control thread has finished
[2026-01-21 14:52:51] 2026-01-21 13:52:23,314 | INFO     | [payload] validate_post thread has finished
[2026-01-21 14:52:51] 2026-01-21 13:52:23,481 | INFO     | [job] create_data_payload thread has finished
[2026-01-21 14:52:51] 2026-01-21 13:52:23,493 | INFO     | [job] validate thread has finished
[2026-01-21 14:52:51] 2026-01-21 13:52:24,087 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-21 14:52:51] 2026-01-21 13:52:28,094 | INFO     | [data] queue_monitor thread has finished
[2026-01-21 14:52:51] 2026-01-21 13:52:31,923 | INFO     | job.realtimelogging is not enabled
[2026-01-21 14:52:51] 2026-01-21 13:52:32,928 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-21 14:52:51] 2026-01-21 13:52:35,499 | INFO     | [monitor] cgroup control has ended
[2026-01-21 14:52:51] 2026-01-21 13:52:36,504 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140681152546624)>', '<ExcThread(monitor, started 140680311600896)>']
[2026-01-21 14:52:51] 2026-01-21 13:52:41,516 | INFO     | all workflow threads have been joined
[2026-01-21 14:52:51] 2026-01-21 13:52:41,516 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-21 14:52:51] 2026-01-21 13:52:41,516 | INFO     | traces error code: 0
[2026-01-21 14:52:51] 2026-01-21 13:52:41,517 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-21 14:52:51] 2026-01-21 13:52:51,481 | INFO     | PID=2471502 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-21 14:52:51] 2026-01-21 13:52:51,481 | INFO     | found 0 job(s) in 20 queues
[2026-01-21 14:52:51] 2026-01-21 13:52:51,481 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-21 14:52:51] 2026-01-21 13:52:51,481 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-21 14:52:51] 2026-01-21 13:52:51,481 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-21 14:52:51] 2026-01-21 13:52:51,481 | CRITICAL | thread 'MainThread' is not alive
[2026-01-21 14:52:51] 2026-01-21 13:52:51,481 | INFO     | [monitor] control thread has ended
[2026-01-21 14:52:51] 2026-01-21 13:52:51,531 [wrapper] ==== pilot stdout END ====
[2026-01-21 14:52:51] 2026-01-21 13:52:51,533 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-21 14:52:51] 2026-01-21 13:52:51,536 [wrapper] pilotpid: 2471502
[2026-01-21 14:52:51] 2026-01-21 13:52:51,538 [wrapper] Pilot exit status: 0
[2026-01-21 14:52:51] 2026-01-21 13:52:51,545 [wrapper] pandaids: 6977078104
[2026-01-21 14:52:51] 2026-01-21 13:52:51,564 [wrapper] cleanup supervisor_pilot 2482609 2471503
[2026-01-21 14:52:51] 2026-01-21 13:52:51,567 [wrapper] Test setup, not cleaning
[2026-01-21 14:52:51] 2026-01-21 13:52:51,569 [wrapper] apfmon messages muted
[2026-01-21 14:52:51] 2026-01-21 13:52:51,572 [wrapper] ==== wrapper stdout END ====
[2026-01-21 14:52:51] 2026-01-21 13:52:51,574 [wrapper] ==== wrapper stderr END ====
[2026-01-21 14:52:51]  *** Error codes and diagnostics ***
[2026-01-21 14:52:51]     "exeErrorCode": 0,
[2026-01-21 14:52:51]     "exeErrorDiag": "",
[2026-01-21 14:52:51]     "pilotErrorCode": 0,
[2026-01-21 14:52:51]     "pilotErrorDiag": "",
[2026-01-21 14:52:51]  *** Listing of results directory ***
[2026-01-21 14:52:51] total 671340
[2026-01-21 14:52:51] -rw-r--r-- 1 boinc boinc    584422 Jan 21 02:23 pilot3.tar.gz
[2026-01-21 14:52:51] -rwx------ 1 boinc boinc     36322 Jan 21 02:25 runpilot2-wrapper.sh
[2026-01-21 14:52:51] -rw-r--r-- 1 boinc boinc      5111 Jan 21 02:26 queuedata.json
[2026-01-21 14:52:51] -rw-r--r-- 1 boinc boinc       100 Jan 21 13:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-21 14:52:51] -rwxr-xr-x 1 boinc boinc      7986 Jan 21 13:34 run_atlas
[2026-01-21 14:52:51] -rw-r--r-- 1 boinc boinc       105 Jan 21 13:34 job.xml
[2026-01-21 14:52:51] -rw-r--r-- 2 boinc boinc 498156157 Jan 21 13:34 EVNT.48301084._000017.pool.root.1
[2026-01-21 14:52:51] -rw-r--r-- 2 boinc boinc    597749 Jan 21 13:34 input.tar.gz
[2026-01-21 14:52:51] -rw-r--r-- 2 boinc boinc     15845 Jan 21 13:34 start_atlas.sh
[2026-01-21 14:52:51] drwxrwx--x 2 boinc boinc      4096 Jan 21 13:34 shared
[2026-01-21 14:52:51] -rw-r--r-- 1 boinc boinc         0 Jan 21 13:34 boinc_setup_complete
[2026-01-21 14:52:51] -rw-r--r-- 1 boinc boinc      6447 Jan 21 13:34 init_data.xml
[2026-01-21 14:52:51] -rw-r--r-- 1 boinc boinc         0 Jan 21 13:34 boinc_lockfile
[2026-01-21 14:52:51] -rw-r--r-- 1 boinc boinc      2518 Jan 21 13:34 pandaJob.out
[2026-01-21 14:52:51] -rw------- 1 boinc boinc   1002701 Jan 21 13:34 agis_schedconf.cvmfs.json
[2026-01-21 14:52:51] -rw------- 1 boinc boinc   1516246 Jan 21 13:34 agis_ddmendpoints.agis.ALL.json
[2026-01-21 14:52:51] -rw------- 1 boinc boinc       427 Jan 21 13:34 workernode_map.json
[2026-01-21 14:52:51] drwx------ 5 boinc boinc      4096 Jan 21 13:34 pilot3
[2026-01-21 14:52:51] -rw------- 1 boinc boinc        95 Jan 21 14:51 pilot_heartbeat.json
[2026-01-21 14:52:51] -rw------- 1 boinc boinc 183445149 Jan 21 14:51 HITS.48301086._000832.pool.root.1
[2026-01-21 14:52:51] -rw-r--r-- 1 boinc boinc       530 Jan 21 14:52 boinc_task_state.xml
[2026-01-21 14:52:51] -rw------- 1 boinc boinc      1015 Jan 21 14:52 memory_monitor_summary.json
[2026-01-21 14:52:51] -rw------- 1 boinc boinc    274123 Jan 21 14:52 log.48301086._000832.job.log.tgz.1
[2026-01-21 14:52:51] -rw------- 1 boinc boinc      6299 Jan 21 14:52 heartbeat.json
[2026-01-21 14:52:51] -rw-r--r-- 1 boinc boinc      8192 Jan 21 14:52 boinc_mmap_file
[2026-01-21 14:52:51] -rw-r--r-- 1 boinc boinc        27 Jan 21 14:52 wrapper_checkpoint.txt
[2026-01-21 14:52:51] -rw------- 1 boinc boinc       817 Jan 21 14:52 pilotlog.txt
[2026-01-21 14:52:51] -rw------- 1 boinc boinc    688271 Jan 21 14:52 log.48301086._000832.job.log.1
[2026-01-21 14:52:51] -rw------- 1 boinc boinc       357 Jan 21 14:52 output.list
[2026-01-21 14:52:51] -rw-r--r-- 1 boinc boinc       620 Jan 21 14:52 runtime_log
[2026-01-21 14:52:51] -rw------- 1 boinc boinc    983040 Jan 21 14:52 result.tar.gz
[2026-01-21 14:52:51] -rw-r--r-- 1 boinc boinc      8916 Jan 21 14:52 runtime_log.err
[2026-01-21 14:52:51] -rw------- 1 boinc boinc       661 Jan 21 14:52 EvzLDmF9b28nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmCPxKDmnUHJRo.diag
[2026-01-21 14:52:51] -rw-r--r-- 1 boinc boinc     10269 Jan 21 14:52 stderr.txt
[2026-01-21 14:52:51] HITS file was successfully produced:
[2026-01-21 14:52:51] -rw------- 1 boinc boinc 183445149 Jan 21 14:51 shared/HITS.pool.root.1
[2026-01-21 14:52:51]  *** Contents of shared directory: ***
[2026-01-21 14:52:51] total 667200
[2026-01-21 14:52:51] -rw-r--r-- 2 boinc boinc 498156157 Jan 21 13:34 ATLAS.root_0
[2026-01-21 14:52:51] -rw-r--r-- 2 boinc boinc    597749 Jan 21 13:34 input.tar.gz
[2026-01-21 14:52:51] -rw-r--r-- 2 boinc boinc     15845 Jan 21 13:34 start_atlas.sh
[2026-01-21 14:52:51] -rw------- 1 boinc boinc 183445149 Jan 21 14:51 HITS.pool.root.1
[2026-01-21 14:52:51] -rw------- 1 boinc boinc    983040 Jan 21 14:52 result.tar.gz
14:52:52 (2467465): run_atlas exited; CPU time 13377.271545
14:52:52 (2467465): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN