Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:31:29 (3551898): wrapper (7.7.26015): starting
06:31:29 (3551898): wrapper: running run_atlas (--nthreads 4)
[2026-01-21 06:31:29] Arguments: --nthreads 4
[2026-01-21 06:31:29] Threads: 4
[2026-01-21 06:31:29] Checking for CVMFS
[2026-01-21 06:31:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-21 06:31:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-21 06:31:29] Running cvmfs_config stat atlas.cern.ch
[2026-01-21 06:31:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-21 06:31:29] 2.9.2.0 2822407 257 95528 155373 1 186 22286055 36864000 0 130560 0 1981174 99.999 12377 10624 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-21 06:31:29] CVMFS is ok
[2026-01-21 06:31:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-21 06:31:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-21 06:31:29] Further information can be found at the LHC@home message board.
[2026-01-21 06:31:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-21 06:31:29] Checking for apptainer binary...
[2026-01-21 06:31:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-21 06:31:29] Running /usr/bin/apptainer --version
[2026-01-21 06:31:29] apptainer version 1.4.1-1.1
[2026-01-21 06:31:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-21 06:31:29] thA325
[2026-01-21 06:31:29] apptainer works
[2026-01-21 06:31:29] Set ATHENA_PROC_NUMBER=4
[2026-01-21 06:31:29] Set ATHENA_CORE_NUMBER=4
[2026-01-21 06:31:29] Starting ATLAS job with PandaID=6977076937
[2026-01-21 06:31:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-21 06:35:44]  *** The last 200 lines of the pilot log: ***
[2026-01-21 06:35:44] 2026-01-21 05:34:43,604 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-21 06:35:44] 2026-01-21 05:34:44,265 | INFO     | all payload control threads have been joined
[2026-01-21 06:35:44] 2026-01-21 05:34:44,353 | INFO     | [job] retrieve thread has finished
[2026-01-21 06:35:44] 2026-01-21 05:34:44,354 | INFO     | [job] job monitor thread has finished
[2026-01-21 06:35:44] 2026-01-21 05:34:44,354 | INFO     | [job] queue monitor thread has finished
[2026-01-21 06:35:44] 2026-01-21 05:34:44,431 | INFO     | [data] control thread has finished
[2026-01-21 06:35:44] 2026-01-21 05:34:44,432 | INFO     | [job] control thread has finished
[2026-01-21 06:35:44] 2026-01-21 05:34:44,515 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-21 06:35:44] 2026-01-21 05:34:45,035 | INFO     | [payload] execute_payloads thread has finished
[2026-01-21 06:35:44] 2026-01-21 05:34:45,211 | INFO     | [job] validate thread has finished
[2026-01-21 06:35:44] 2026-01-21 05:34:45,232 | INFO     | [payload] failed_post thread has finished
[2026-01-21 06:35:44] 2026-01-21 05:34:45,271 | INFO     | [payload] control thread has finished
[2026-01-21 06:35:44] 2026-01-21 05:34:45,317 | INFO     | [job] create_data_payload thread has finished
[2026-01-21 06:35:44] 2026-01-21 05:34:45,376 | INFO     | [payload] validate_pre thread has finished
[2026-01-21 06:35:44] 2026-01-21 05:34:45,516 | INFO     | [data] copytool_in thread has finished
[2026-01-21 06:35:44] 2026-01-21 05:34:45,611 | INFO     | [data] copytool_out thread has finished
[2026-01-21 06:35:44] 2026-01-21 05:34:45,734 | INFO     | [payload] validate_post thread has finished
[2026-01-21 06:35:44] 2026-01-21 05:34:47,355 | INFO     | [data] queue_monitor thread has finished
[2026-01-21 06:35:44] 2026-01-21 05:35:13,789 | INFO     | PID=3555692 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-21 06:35:44] 2026-01-21 05:35:13,789 | INFO     | found 0 job(s) in 20 queues
[2026-01-21 06:35:44] 2026-01-21 05:35:13,789 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-21 06:35:44] 2026-01-21 05:35:13,789 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-21 06:35:44] 2026-01-21 05:35:38,792 | INFO     | [monitor] cgroup control has ended
[2026-01-21 06:35:44] 2026-01-21 05:35:38,964 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139879106287424)>', '<ExcThread(monitor, started 139878469715712)>']
[2026-01-21 06:35:44] 2026-01-21 05:35:39,926 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-21 06:35:44] 2026-01-21 05:35:39,926 | INFO     | [monitor] control thread has ended
[2026-01-21 06:35:44] 2026-01-21 05:35:43,990 | INFO     | all workflow threads have been joined
[2026-01-21 06:35:44] 2026-01-21 05:35:43,991 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-21 06:35:44] 2026-01-21 05:35:43,991 | INFO     | traces error code: 0
[2026-01-21 06:35:44] 2026-01-21 05:35:43,991 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-21 06:35:44] 2026-01-21 05:35:44,058 [wrapper] ==== pilot stdout END ====
[2026-01-21 06:35:44] 2026-01-21 05:35:44,062 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-21 06:35:44] 2026-01-21 05:35:44,066 [wrapper] pilotpid: 3555692
[2026-01-21 06:35:44] 2026-01-21 05:35:44,069 [wrapper] Pilot exit status: 0
[2026-01-21 06:35:44] 2026-01-21 05:35:44,079 [wrapper] pandaids: 6977076937
[2026-01-21 06:35:44] 2026-01-21 05:35:44,099 [wrapper] cleanup supervisor_pilot 3555698 3555693
[2026-01-21 06:35:44] 2026-01-21 05:35:44,102 [wrapper] Test setup, not cleaning
[2026-01-21 06:35:44] 2026-01-21 05:35:44,105 [wrapper] apfmon messages muted
[2026-01-21 06:35:44] 2026-01-21 05:35:44,109 [wrapper] ==== wrapper stdout END ====
[2026-01-21 06:35:44] 2026-01-21 05:35:44,112 [wrapper] ==== wrapper stderr END ====
[2026-01-21 06:35:44]  *** Error codes and diagnostics ***
[2026-01-21 06:35:44]     "exeErrorCode": 0,
[2026-01-21 06:35:44]     "exeErrorDiag": "",
[2026-01-21 06:35:44]     "pilotErrorCode": 1305,
[2026-01-21 06:35:44]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139); Logfile error in log.EVNTtoHITS: \"ToolSvc                                                          ERROR Canno",
[2026-01-21 06:35:44]  *** Listing of results directory ***
[2026-01-21 06:35:44] total 493544
[2026-01-21 06:35:44] -rw-r--r-- 1 boinc boinc    584422 Jan 21 02:23 pilot3.tar.gz
[2026-01-21 06:35:44] -rw-r--r-- 1 boinc boinc      5111 Jan 21 02:24 queuedata.json
[2026-01-21 06:35:44] -rwx------ 1 boinc boinc     36322 Jan 21 02:24 runpilot2-wrapper.sh
[2026-01-21 06:35:44] -rw-r--r-- 1 boinc boinc       100 Jan 21 06:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-21 06:35:44] -rwxr-xr-x 1 boinc boinc      7986 Jan 21 06:31 run_atlas
[2026-01-21 06:35:44] -rw-r--r-- 1 boinc boinc       105 Jan 21 06:31 job.xml
[2026-01-21 06:35:44] -rw-r--r-- 2 boinc boinc 501203897 Jan 21 06:31 EVNT.48301084._000016.pool.root.1
[2026-01-21 06:35:44] -rw-r--r-- 2 boinc boinc    597751 Jan 21 06:31 input.tar.gz
[2026-01-21 06:35:44] -rw-r--r-- 2 boinc boinc     15845 Jan 21 06:31 start_atlas.sh
[2026-01-21 06:35:44] drwxrwx--x 2 boinc boinc      4096 Jan 21 06:31 shared
[2026-01-21 06:35:44] -rw-r--r-- 1 boinc boinc         0 Jan 21 06:31 boinc_setup_complete
[2026-01-21 06:35:44] -rw-r--r-- 1 boinc boinc      6369 Jan 21 06:31 init_data.xml
[2026-01-21 06:35:44] -rw-r--r-- 1 boinc boinc         0 Jan 21 06:31 boinc_lockfile
[2026-01-21 06:35:44] -rw-r--r-- 1 boinc boinc      2517 Jan 21 06:31 pandaJob.out
[2026-01-21 06:35:44] -rw------- 1 boinc boinc   1000353 Jan 21 06:31 agis_schedconf.cvmfs.json
[2026-01-21 06:35:44] -rw------- 1 boinc boinc   1516246 Jan 21 06:31 agis_ddmendpoints.agis.ALL.json
[2026-01-21 06:35:44] -rw------- 1 boinc boinc       427 Jan 21 06:31 workernode_map.json
[2026-01-21 06:35:44] drwx------ 5 boinc boinc      4096 Jan 21 06:31 pilot3
[2026-01-21 06:35:44] -rw-r--r-- 1 boinc boinc       525 Jan 21 06:32 boinc_task_state.xml
[2026-01-21 06:35:44] -rw------- 1 boinc boinc       954 Jan 21 06:32 memory_monitor_summary.json
[2026-01-21 06:35:44] -rw------- 1 boinc boinc     44812 Jan 21 06:32 log.48301086._000764.job.log.tgz.1
[2026-01-21 06:35:44] -rw------- 1 boinc boinc        95 Jan 21 06:34 pilot_heartbeat.json
[2026-01-21 06:35:44] -rw------- 1 boinc boinc      7698 Jan 21 06:34 heartbeat.json
[2026-01-21 06:35:44] -rw-r--r-- 1 boinc boinc      8192 Jan 21 06:35 boinc_mmap_file
[2026-01-21 06:35:44] -rw-r--r-- 1 boinc boinc        23 Jan 21 06:35 wrapper_checkpoint.txt
[2026-01-21 06:35:44] -rw------- 1 boinc boinc      4748 Jan 21 06:35 pilotlog.txt
[2026-01-21 06:35:44] -rw------- 1 boinc boinc     86045 Jan 21 06:35 log.48301086._000764.job.log.1
[2026-01-21 06:35:44] -rw------- 1 boinc boinc       188 Jan 21 06:35 output.list
[2026-01-21 06:35:44] -rw-r--r-- 1 boinc boinc       620 Jan 21 06:35 runtime_log
[2026-01-21 06:35:44] -rw------- 1 boinc boinc    153600 Jan 21 06:35 result.tar.gz
[2026-01-21 06:35:44] -rw-r--r-- 1 boinc boinc      8743 Jan 21 06:35 runtime_log.err
[2026-01-21 06:35:44] -rw------- 1 boinc boinc       648 Jan 21 06:35 BieMDmH8b28n9Rq4apOajLDm4fhM0noT9bVo0NGKDmcmqKDmB4tT9n.diag
[2026-01-21 06:35:44] -rw-r--r-- 1 boinc boinc      6821 Jan 21 06:35 stderr.txt
[2026-01-21 06:35:44] No HITS result produced
[2026-01-21 06:35:44]  *** Contents of shared directory: ***
[2026-01-21 06:35:44] total 490216
[2026-01-21 06:35:44] -rw-r--r-- 2 boinc boinc 501203897 Jan 21 06:31 ATLAS.root_0
[2026-01-21 06:35:44] -rw-r--r-- 2 boinc boinc    597751 Jan 21 06:31 input.tar.gz
[2026-01-21 06:35:44] -rw-r--r-- 2 boinc boinc     15845 Jan 21 06:31 start_atlas.sh
[2026-01-21 06:35:44] -rw------- 1 boinc boinc    153600 Jan 21 06:35 result.tar.gz
06:35:45 (3551898): run_atlas exited; CPU time 20.011401
06:35:45 (3551898): called boinc_finish(0)

</stderr_txt>
]]>

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