Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
06:46:14 (196000): wrapper (7.7.26015): starting
06:46:14 (196000): wrapper: running run_atlas (--nthreads 12)
[2026-01-21 06:46:14] Arguments: --nthreads 12
[2026-01-21 06:46:14] Threads: 12
[2026-01-21 06:46:14] Checking for CVMFS
[2026-01-21 06:47:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-21 06:49:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-21 06:49:43] Running cvmfs_config stat atlas.cern.ch
[2026-01-21 06:50:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-21 06:50:03] 2.12.7.0 196394 3 23372 155377 1 1 2192953 4194305 0 130560 1 0 100.000 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://cvmfsbproxy.fnal.gov:3126 0
[2026-01-21 06:50:03] CVMFS is ok
[2026-01-21 06:50:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-21 06:50:03] Checking for apptainer binary...
[2026-01-21 06:50:03] apptainer is not installed, using version from CVMFS
[2026-01-21 06:50:03] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-21 06:50:35] apptainer isnt working: FATAL:   while opening capability config file: open /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/1.2.2/etc/apptainer/capability.json: input/output error
[2026-01-21 06:50:35] Falling back to singularity found in PATH at /usr/local/bin/singularity
[2026-01-21 06:50:35] WARNING: singularity support will be removed in a future version of native ATLAS
[2026-01-21 06:50:35] Please install apptainer instead following the instructions at https://apptainer.org/docs/admin/main/installation.html
[2026-01-21 06:50:35] Checking singularity works with /usr/local/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-21 06:50:55] singularity works
[2026-01-21 06:50:55] Set ATHENA_PROC_NUMBER=12
[2026-01-21 06:50:55] Set ATHENA_CORE_NUMBER=12
[2026-01-21 06:50:55] Starting ATLAS job with PandaID=6977044688
[2026-01-21 06:50:55] Running command: /usr/local/bin/singularity exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-21 08:20:41]  *** The last 200 lines of the pilot log: ***
[2026-01-21 08:20:41]  lfn=log.48298445._000346.job.log.tgz.1
[2026-01-21 08:20:41]  mtime=0
[2026-01-21 08:20:41]  protocol_id=None
[2026-01-21 08:20:41]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-21 08:20:41]  replicas=None
[2026-01-21 08:20:41]  scope=mc23_13p6TeV
[2026-01-21 08:20:41]  status=None
[2026-01-21 08:20:41]  status_code=0
[2026-01-21 08:20:41]  storage_token=
[2026-01-21 08:20:41]  surl=/var/lib/boinc-client/slots/3/PanDA_Pilot-6977044688/log.48298445._000346.job.log.tgz.1
[2026-01-21 08:20:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/75/1c/log.48298445._000346.job.log.tgz.1
[2026-01-21 08:20:41]  workdir=None
[2026-01-21 08:20:41] ]
[2026-01-21 08:20:41] 2026-01-21 13:20:03,592 | INFO     | transferring file log.48298445._000346.job.log.tgz.1 from /var/lib/boinc-client/slots/3/PanDA_Pilot-6977044688/log.48298445._000346.job.log.tgz.1 to /var/lib/boinc
[2026-01-21 08:20:41] 2026-01-21 13:20:03,593 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/3/PanDA_Pilot-6977044688/log.48298445._000346.job.log.tgz.1 /var/lib/boinc-client/slots/3/log.482984
[2026-01-21 08:20:41] 2026-01-21 13:20:03,606 | INFO     | adding to output.list: log.48298445._000346.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/75/1c/log.48298445._000346.job.log.tg
[2026-01-21 08:20:41] 2026-01-21 13:20:03,607 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-21 08:20:41] 2026-01-21 13:20:03,607 | INFO     | summary of transferred files:
[2026-01-21 08:20:41] 2026-01-21 13:20:03,607 | INFO     |  -- lfn=log.48298445._000346.job.log.tgz.1, status_code=0, status=transferred
[2026-01-21 08:20:41] 2026-01-21 13:20:03,607 | INFO     | stage-out finished correctly
[2026-01-21 08:20:41] 2026-01-21 13:20:04,436 | INFO     | time since job start (5260s) is within the limit (349056.0s)
[2026-01-21 08:20:41] 2026-01-21 13:20:05,912 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-21 08:20:41] 2026-01-21 13:20:06,441 | INFO     | time since job start (5262s) is within the limit (349056.0s)
[2026-01-21 08:20:41] 2026-01-21 13:20:08,256 | WARNING  | process 232789 can no longer be monitored (due to stat problems) - aborting
[2026-01-21 08:20:41] 2026-01-21 13:20:08,256 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6977044688/memory_monitor_summary.json (trf name=prmon)
[2026-01-21 08:20:41] 2026-01-21 13:20:08,384 | INFO     | number of running child processes to parent process 232789: 1
[2026-01-21 08:20:41] 2026-01-21 13:20:08,384 | INFO     | maximum number of monitored processes: 6
[2026-01-21 08:20:41] 2026-01-21 13:20:08,447 | INFO     | time since job start (5264s) is within the limit (349056.0s)
[2026-01-21 08:20:41] 2026-01-21 13:20:08,859 | INFO     | job 6977044688 has state=finished
[2026-01-21 08:20:41] 2026-01-21 13:20:08,859 | INFO     | preparing for final server update for job 6977044688 in state='finished'
[2026-01-21 08:20:41] 2026-01-21 13:20:08,859 | INFO     | reading metadata from: /var/lib/boinc-client/slots/3/PanDA_Pilot-6977044688/jobReport.json
[2026-01-21 08:20:41] 2026-01-21 13:20:08,861 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/3/workernode_map.json
[2026-01-21 08:20:41] 2026-01-21 13:20:08,862 | INFO     | this job has now completed (state=finished)
[2026-01-21 08:20:41] 2026-01-21 13:20:08,862 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-21 08:20:41] 2026-01-21 13:20:08,862 | INFO     | log transfer has been attempted: DONE
[2026-01-21 08:20:41] 2026-01-21 13:20:08,862 | INFO     | job 6977044688 has finished - writing final server update
[2026-01-21 08:20:41] 2026-01-21 13:20:08,862 | INFO     | total number of processed events: 400 (read)
[2026-01-21 08:20:41] 2026-01-21 13:20:08,892 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6977044688/memory_monitor_summary.json (trf name=prmon)
[2026-01-21 08:20:41] 2026-01-21 13:20:08,893 | INFO     | extracted standard info from prmon json
[2026-01-21 08:20:41] 2026-01-21 13:20:08,893 | INFO     | extracted standard memory fields from prmon json
[2026-01-21 08:20:41] 2026-01-21 13:20:08,893 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-21 08:20:41] 2026-01-21 13:20:08,893 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-21 08:20:41] 2026-01-21 13:20:08,893 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-21 08:20:41] 2026-01-21 13:20:08,895 | INFO     | fitting pss+swap vs Time
[2026-01-21 08:20:41] 2026-01-21 13:20:08,895 | INFO     | sum of square deviations: 152858680.0
[2026-01-21 08:20:41] 2026-01-21 13:20:08,896 | INFO     | sum of deviations: 27861511734.0
[2026-01-21 08:20:41] 2026-01-21 13:20:08,896 | INFO     | mean x: 1768999050.0
[2026-01-21 08:20:41] 2026-01-21 13:20:08,896 | INFO     | mean y: 2543892.139240506
[2026-01-21 08:20:41] 2026-01-21 13:20:08,896 | INFO     | intersect: -322432451549.46643
[2026-01-21 08:20:41] 2026-01-21 13:20:08,896 | INFO     | chi2: 3.4473468382041754
[2026-01-21 08:20:41] 2026-01-21 13:20:08,896 | INFO     | current memory leak: 182.27 B/s (using 79 data points, chi2=3.45)
[2026-01-21 08:20:41] 2026-01-21 13:20:08,897 | INFO     | could have reported an average CPU frequency of 1319 MHz (6 samples)
[2026-01-21 08:20:41] 2026-01-21 13:20:08,897 | INFO     | ..............................
[2026-01-21 08:20:41] 2026-01-21 13:20:08,897 | INFO     | . Timing measurements:
[2026-01-21 08:20:41] 2026-01-21 13:20:08,897 | INFO     | . get job = 0 s
[2026-01-21 08:20:41] 2026-01-21 13:20:08,897 | INFO     | . initial setup = 7 s
[2026-01-21 08:20:41] 2026-01-21 13:20:08,897 | INFO     | . payload setup = 7 s
[2026-01-21 08:20:41] 2026-01-21 13:20:08,897 | INFO     | . stage-in = 0 s
[2026-01-21 08:20:41] 2026-01-21 13:20:08,897 | INFO     | . payload execution = 5235 s
[2026-01-21 08:20:41] 2026-01-21 13:20:08,897 | INFO     | . stage-out = 0 s
[2026-01-21 08:20:41] 2026-01-21 13:20:08,897 | INFO     | . log creation = 0 s
[2026-01-21 08:20:41] 2026-01-21 13:20:08,897 | INFO     | ..............................
[2026-01-21 08:20:41] 2026-01-21 13:20:09,090 | INFO     | 
[2026-01-21 08:20:41] 2026-01-21 13:20:09,090 | INFO     | job summary report
[2026-01-21 08:20:41] 2026-01-21 13:20:09,090 | INFO     | --------------------------------------------------
[2026-01-21 08:20:41] 2026-01-21 13:20:09,090 | INFO     | PanDA job id: 6977044688
[2026-01-21 08:20:41] 2026-01-21 13:20:09,090 | INFO     | task id: 48298445
[2026-01-21 08:20:41] 2026-01-21 13:20:09,090 | INFO     | errors: (none)
[2026-01-21 08:20:41] 2026-01-21 13:20:09,091 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-21 08:20:41] 2026-01-21 13:20:09,091 | INFO     | pilot state: finished 
[2026-01-21 08:20:41] 2026-01-21 13:20:09,091 | INFO     | transexitcode: 0
[2026-01-21 08:20:41] 2026-01-21 13:20:09,091 | INFO     | exeerrorcode: 0
[2026-01-21 08:20:41] 2026-01-21 13:20:09,091 | INFO     | exeerrordiag: 
[2026-01-21 08:20:41] 2026-01-21 13:20:09,091 | INFO     | exitcode: 0
[2026-01-21 08:20:41] 2026-01-21 13:20:09,091 | INFO     | exitmsg: OK
[2026-01-21 08:20:41] 2026-01-21 13:20:09,091 | INFO     | cpuconsumptiontime: 51230 s
[2026-01-21 08:20:41] 2026-01-21 13:20:09,091 | INFO     | nevents: 400
[2026-01-21 08:20:41] 2026-01-21 13:20:09,091 | INFO     | neventsw: 0
[2026-01-21 08:20:41] 2026-01-21 13:20:09,091 | INFO     | pid: 232789
[2026-01-21 08:20:41] 2026-01-21 13:20:09,091 | INFO     | pgrp: 232789
[2026-01-21 08:20:41] 2026-01-21 13:20:09,092 | INFO     | corecount: 12
[2026-01-21 08:20:41] 2026-01-21 13:20:09,092 | INFO     | event service: False
[2026-01-21 08:20:41] 2026-01-21 13:20:09,092 | INFO     | sizes: {0: 2284374, 11: 2284374, 5246: 2310665, 5249: 2319677, 5251: 2319733, 5254: 2319927}
[2026-01-21 08:20:41] 2026-01-21 13:20:09,092 | INFO     | --------------------------------------------------
[2026-01-21 08:20:41] 2026-01-21 13:20:09,092 | INFO     | 
[2026-01-21 08:20:41] 2026-01-21 13:20:09,092 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2026-01-21 08:20:41] 2026-01-21 13:20:09,110 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-21 08:20:41] 2026-01-21 13:20:09,110 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-21 08:20:41] 2026-01-21 13:20:09,111 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-21 08:20:41] 2026-01-21 13:20:09,111 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-21 08:20:41] 2026-01-21 13:20:09,111 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-21 08:20:41] 2026-01-21 13:20:09,111 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-21 08:20:41] 2026-01-21 13:20:09,111 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-21 08:20:41] 2026-01-21 13:20:09,111 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-21 08:20:41] 2026-01-21 13:20:09,112 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-21 08:20:41] 2026-01-21 13:20:09,112 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-21 08:20:41] 2026-01-21 13:20:09,112 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-21 08:20:41] 2026-01-21 13:20:09,112 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-21 08:20:41] 2026-01-21 13:20:09,112 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-21 08:20:41] 2026-01-21 13:20:09,112 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-21 08:20:41] 2026-01-21 13:20:09,112 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-21 08:20:41] 2026-01-21 13:20:09,112 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-21 08:20:41] 2026-01-21 13:20:09,112 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-21 08:20:41] 2026-01-21 13:20:09,112 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-21 08:20:41] 2026-01-21 13:20:09,112 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-21 08:20:41] 2026-01-21 13:20:09,112 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-21 08:20:41] 2026-01-21 13:20:09,113 | INFO     | job 6977044688 has completed (purged errors)
[2026-01-21 08:20:41] 2026-01-21 13:20:09,113 | INFO     | overall cleanup function is called
[2026-01-21 08:20:41] 2026-01-21 13:20:10,119 | INFO     | --- collectZombieJob: --- 10, [232789]
[2026-01-21 08:20:41] 2026-01-21 13:20:10,120 | INFO     | zombie collector waiting for pid 232789
[2026-01-21 08:20:41] 2026-01-21 13:20:10,120 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-21 08:20:41] 2026-01-21 13:20:10,120 | INFO     | collected zombie processes
[2026-01-21 08:20:41] 2026-01-21 13:20:10,120 | INFO     | will attempt to kill all subprocesses of pid=232789
[2026-01-21 08:20:41] 2026-01-21 13:20:10,272 | INFO     | process IDs to be killed: [232789] (in reverse order)
[2026-01-21 08:20:41] 2026-01-21 13:20:10,318 | WARNING  | found no corresponding commands to process id(s)
[2026-01-21 08:20:41] 2026-01-21 13:20:10,318 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-21 08:20:41] 2026-01-21 13:20:10,326 | INFO     | did not find any defunct processes belonging to 232789
[2026-01-21 08:20:41] 2026-01-21 13:20:10,329 | INFO     | did not find any defunct processes belonging to 232789
[2026-01-21 08:20:41] 2026-01-21 13:20:10,330 | INFO     | ready for new job
[2026-01-21 08:20:41] 2026-01-21 13:20:10,330 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-21 08:20:41] 2026-01-21 13:20:10,331 | INFO     | **************************************
[2026-01-21 08:20:41] 2026-01-21 13:20:10,331 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-21 08:20:41] 2026-01-21 13:20:10,331 | INFO     | **************************************
[2026-01-21 08:20:41] 2026-01-21 13:20:10,331 | INFO     | 
[2026-01-21 08:20:41] 2026-01-21 13:20:10,351 | INFO     | architecture information:
[2026-01-21 08:20:41] 2026-01-21 13:20:10,352 | INFO     | executing command: cat /etc/os-release
[2026-01-21 08:20:41] 2026-01-21 13:20:10,362 | INFO     | cat /etc/os-release:
[2026-01-21 08:20:41] NAME="CentOS Linux"
[2026-01-21 08:20:41] VERSION="7 (Core)"
[2026-01-21 08:20:41] ID="centos"
[2026-01-21 08:20:41] ID_LIKE="rhel fedora"
[2026-01-21 08:20:41] VERSION_ID="7"
[2026-01-21 08:20:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-21 08:20:41] ANSI_COLOR="0;31"
[2026-01-21 08:20:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-21 08:20:41] HOME_URL="https://www.centos.org/"
[2026-01-21 08:20:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-21 08:20:41] 
[2026-01-21 08:20:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-21 08:20:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-21 08:20:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-21 08:20:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-21 08:20:41] 
[2026-01-21 08:20:41] 2026-01-21 13:20:10,363 | INFO     | **************************************
[2026-01-21 08:20:41] 2026-01-21 13:20:10,863 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2026-01-21 08:20:41] 2026-01-21 13:20:10,873 | INFO     | sufficient remaining disk space (391224754176 B)
[2026-01-21 08:20:41] 2026-01-21 13:20:10,873 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-21 08:20:41] 2026-01-21 13:20:10,873 | INFO     | current server update state: UPDATING_FINAL
[2026-01-21 08:20:41] 2026-01-21 13:20:10,873 | INFO     | update_server=False
[2026-01-21 08:20:41] 2026-01-21 13:20:10,873 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-21 08:20:41] 2026-01-21 13:20:10,874 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-21 08:20:41] 2026-01-21 13:20:10,887 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-21 08:20:41] 2026-01-21 13:20:10,888 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-21 08:20:41] 2026-01-21 13:20:10,888 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-21 08:20:41] 2026-01-21 13:20:10,888 | INFO     | will abort loop
[2026-01-21 08:20:41] 2026-01-21 13:20:11,389 | INFO     | all job control threads have been joined
[2026-01-21 08:20:41] 2026-01-21 13:20:11,607 | INFO     | all data control threads have been joined
[2026-01-21 08:20:41] 2026-01-21 13:20:11,674 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-21 08:20:41] 2026-01-21 13:20:11,722 | INFO     | all payload control threads have been joined
[2026-01-21 08:20:41] 2026-01-21 13:20:11,879 | INFO     | [job] retrieve thread has finished
[2026-01-21 08:20:41] 2026-01-21 13:20:11,879 | INFO     | [job] queue monitor thread has finished
[2026-01-21 08:20:41] 2026-01-21 13:20:11,893 | INFO     | [job] job monitor thread has finished
[2026-01-21 08:20:41] 2026-01-21 13:20:12,003 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-21 08:20:41] 2026-01-21 13:20:12,139 | INFO     | [data] copytool_in thread has finished
[2026-01-21 08:20:41] 2026-01-21 13:20:12,175 | INFO     | [payload] validate_post thread has finished
[2026-01-21 08:20:41] 2026-01-21 13:20:12,395 | INFO     | [job] control thread has finished
[2026-01-21 08:20:41] 2026-01-21 13:20:12,583 | INFO     | [job] validate thread has finished
[2026-01-21 08:20:41] 2026-01-21 13:20:12,612 | INFO     | [data] control thread has finished
[2026-01-21 08:20:41] 2026-01-21 13:20:12,728 | INFO     | [payload] control thread has finished
[2026-01-21 08:20:41] 2026-01-21 13:20:12,903 | INFO     | [payload] execute_payloads thread has finished
[2026-01-21 08:20:41] 2026-01-21 13:20:13,219 | INFO     | [payload] failed_post thread has finished
[2026-01-21 08:20:41] 2026-01-21 13:20:13,234 | INFO     | [job] create_data_payload thread has finished
[2026-01-21 08:20:41] 2026-01-21 13:20:13,312 | INFO     | [payload] validate_pre thread has finished
[2026-01-21 08:20:41] 2026-01-21 13:20:13,680 | INFO     | [data] copytool_out thread has finished
[2026-01-21 08:20:41] 2026-01-21 13:20:16,007 | INFO     | [data] queue_monitor thread has finished
[2026-01-21 08:20:41] 2026-01-21 13:20:21,029 | INFO     | job.realtimelogging is not enabled
[2026-01-21 08:20:41] 2026-01-21 13:20:22,035 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-21 08:20:41] 2026-01-21 13:20:31,725 | INFO     | [monitor] cgroup control has ended
[2026-01-21 08:20:41] 2026-01-21 13:20:33,481 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140185531139904)>', '<ExcThread(monitor, started 140184930719488)>']
[2026-01-21 08:20:41] 2026-01-21 13:20:38,503 | INFO     | all workflow threads have been joined
[2026-01-21 08:20:41] 2026-01-21 13:20:38,503 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-21 08:20:41] 2026-01-21 13:20:38,504 | INFO     | traces error code: 0
[2026-01-21 08:20:41] 2026-01-21 13:20:38,504 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-21 08:20:41] 2026-01-21 13:20:41,731 | INFO     | PID=213801 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-21 08:20:41] 2026-01-21 13:20:41,731 | INFO     | .. there are 4 such processes running
[2026-01-21 08:20:41] 2026-01-21 13:20:41,732 | INFO     | found 0 job(s) in 20 queues
[2026-01-21 08:20:41] 2026-01-21 13:20:41,732 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-21 08:20:41] 2026-01-21 13:20:41,732 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-21 08:20:41] 2026-01-21 13:20:41,732 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-21 08:20:41] 2026-01-21 13:20:41,732 | INFO     | [monitor] control thread has ended
[2026-01-21 08:20:41] 2026-01-21 13:20:41,800 [wrapper] ==== pilot stdout END ====
[2026-01-21 08:20:41] 2026-01-21 13:20:41,803 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-21 08:20:41] 2026-01-21 13:20:41,806 [wrapper] pilotpid: 213801
[2026-01-21 08:20:41] 2026-01-21 13:20:41,808 [wrapper] Pilot exit status: 0
[2026-01-21 08:20:41] 2026-01-21 13:20:41,817 [wrapper] pandaids: 6977044688
[2026-01-21 08:20:41] 2026-01-21 13:20:41,851 [wrapper] cleanup supervisor_pilot  277186 213803
[2026-01-21 08:20:41] 2026-01-21 13:20:41,852 [wrapper] Test setup, not cleaning
[2026-01-21 08:20:41] 2026-01-21 13:20:41,854 [wrapper] apfmon messages muted
[2026-01-21 08:20:41] 2026-01-21 13:20:41,856 [wrapper] ==== wrapper stdout END ====
[2026-01-21 08:20:41] 2026-01-21 13:20:41,858 [wrapper] ==== wrapper stderr END ====
[2026-01-21 08:20:41]  *** Error codes and diagnostics ***
[2026-01-21 08:20:41]     "exeErrorCode": 0,
[2026-01-21 08:20:41]     "exeErrorDiag": "",
[2026-01-21 08:20:41]     "pilotErrorCode": 0,
[2026-01-21 08:20:41]     "pilotErrorDiag": "",
[2026-01-21 08:20:41]  *** Listing of results directory ***
[2026-01-21 08:20:41] total 416984
[2026-01-21 08:20:41] -rw-r--r-- 1 boinc boinc    584422 Jan 20 20:23 pilot3.tar.gz
[2026-01-21 08:20:41] -rwx------ 1 boinc boinc     36322 Jan 20 20:23 runpilot2-wrapper.sh
[2026-01-21 08:20:41] -rw-r--r-- 1 boinc boinc      5111 Jan 20 20:24 queuedata.json
[2026-01-21 08:20:41] -rw-r--r-- 1 boinc boinc       100 Jan 21 06:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-21 08:20:41] -rwxr-xr-x 1 boinc boinc      7986 Jan 21 06:46 run_atlas
[2026-01-21 08:20:41] -rw-r--r-- 1 boinc boinc       105 Jan 21 06:46 job.xml
[2026-01-21 08:20:41] -rw-r--r-- 2 boinc boinc 250693595 Jan 21 06:46 EVNT.48298442._000014.pool.root.1
[2026-01-21 08:20:41] -rw-r--r-- 2 boinc boinc     15845 Jan 21 06:46 start_atlas.sh
[2026-01-21 08:20:41] drwxrwx--x 2 boinc boinc      4096 Jan 21 06:46 shared
[2026-01-21 08:20:41] -rw-r--r-- 2 boinc boinc    597770 Jan 21 06:46 input.tar.gz
[2026-01-21 08:20:41] -rw-r--r-- 1 boinc boinc         0 Jan 21 06:46 boinc_lockfile
[2026-01-21 08:20:41] -rw-r--r-- 1 boinc boinc      2614 Jan 21 06:50 pandaJob.out
[2026-01-21 08:20:41] -rw------- 1 boinc boinc        50 Jan 21 06:51 setup.sh.local
[2026-01-21 08:20:41] -rw------- 1 boinc boinc   1000361 Jan 21 06:52 agis_schedconf.cvmfs.json
[2026-01-21 08:20:41] -rw------- 1 boinc boinc   1516246 Jan 21 06:52 agis_ddmendpoints.agis.ALL.json
[2026-01-21 08:20:41] -rw------- 1 boinc boinc       430 Jan 21 06:52 workernode_map.json
[2026-01-21 08:20:41] drwx------ 5 boinc boinc      4096 Jan 21 06:52 pilot3
[2026-01-21 08:20:41] -rw-r--r-- 1 boinc boinc      7581 Jan 21 06:52 init_data.xml
[2026-01-21 08:20:41] -rw------- 1 boinc boinc 169999322 Jan 21 08:19 HITS.48298445._000346.pool.root.1
[2026-01-21 08:20:41] -rw-r--r-- 1 boinc boinc       529 Jan 21 08:19 boinc_task_state.xml
[2026-01-21 08:20:41] -rw------- 1 boinc boinc      1034 Jan 21 08:19 memory_monitor_summary.json
[2026-01-21 08:20:41] -rw------- 1 boinc boinc    404078 Jan 21 08:20 log.48298445._000346.job.log.tgz.1
[2026-01-21 08:20:41] -rw------- 1 boinc boinc      6337 Jan 21 08:20 heartbeat.json
[2026-01-21 08:20:41] -rw-r--r-- 1 boinc boinc      8192 Jan 21 08:20 boinc_mmap_file
[2026-01-21 08:20:41] -rw-r--r-- 1 boinc boinc        27 Jan 21 08:20 wrapper_checkpoint.txt
[2026-01-21 08:20:41] -rw------- 1 boinc boinc       821 Jan 21 08:20 pilotlog.txt
[2026-01-21 08:20:41] -rw------- 1 boinc boinc        95 Jan 21 08:20 pilot_heartbeat.json
[2026-01-21 08:20:41] -rw------- 1 boinc boinc    775413 Jan 21 08:20 log.48298445._000346.job.log.1
[2026-01-21 08:20:41] -rw------- 1 boinc boinc       357 Jan 21 08:20 output.list
[2026-01-21 08:20:41] -rw-r--r-- 1 boinc boinc       620 Jan 21 08:20 runtime_log
[2026-01-21 08:20:41] -rw------- 1 boinc boinc   1198080 Jan 21 08:20 result.tar.gz
[2026-01-21 08:20:41] -rw-r--r-- 1 boinc boinc      9471 Jan 21 08:20 runtime_log.err
[2026-01-21 08:20:41] -rw------- 1 boinc boinc       650 Jan 21 08:20 JoyNDm47b28n9Rq4apOajLDm4fhM0noT9bVo0NGKDmdlqKDmsB7VMn.diag
[2026-01-21 08:20:41] -rw-r--r-- 1 boinc boinc     21995 Jan 21 08:20 stderr.txt
[2026-01-21 08:20:41] HITS file was successfully produced:
[2026-01-21 08:20:41] -rw------- 1 boinc boinc 169999322 Jan 21 08:19 shared/HITS.pool.root.1
[2026-01-21 08:20:41]  *** Contents of shared directory: ***
[2026-01-21 08:20:41] total 412616
[2026-01-21 08:20:41] -rw-r--r-- 2 boinc boinc 250693595 Jan 21 06:46 ATLAS.root_0
[2026-01-21 08:20:41] -rw-r--r-- 2 boinc boinc     15845 Jan 21 06:46 start_atlas.sh
[2026-01-21 08:20:41] -rw-r--r-- 2 boinc boinc    597770 Jan 21 06:46 input.tar.gz
[2026-01-21 08:20:41] -rw------- 1 boinc boinc 169999322 Jan 21 08:19 HITS.pool.root.1
[2026-01-21 08:20:41] -rw------- 1 boinc boinc   1198080 Jan 21 08:20 result.tar.gz
08:20:43 (196000): run_atlas exited; CPU time 51330.776327
08:20:43 (196000): called boinc_finish(0)

</stderr_txt>
]]>

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