Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
06:46:12 (195854): wrapper (7.7.26015): starting
06:46:12 (195854): wrapper: running run_atlas (--nthreads 12)
[2026-01-21 06:46:12] Arguments: --nthreads 12
[2026-01-21 06:46:12] Threads: 12
[2026-01-21 06:46:12] Checking for CVMFS
[2026-01-21 06:47:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-21 06:49:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-21 06:49:43] Running cvmfs_config stat atlas.cern.ch
[2026-01-21 06:50:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-21 06:50:03] 2.12.7.0 196394 3 23372 155377 1 1 2192953 4194305 0 130560 1 0 100.000 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://cvmfsbproxy.fnal.gov:3126 0
[2026-01-21 06:50:03] CVMFS is ok
[2026-01-21 06:50:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-21 06:50:03] Checking for apptainer binary...
[2026-01-21 06:50:03] apptainer is not installed, using version from CVMFS
[2026-01-21 06:50:03] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-21 06:50:35] apptainer isnt working: FATAL:   while opening capability config file: open /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/1.2.2/etc/apptainer/capability.json: input/output error
[2026-01-21 06:50:35] Falling back to singularity found in PATH at /usr/local/bin/singularity
[2026-01-21 06:50:35] WARNING: singularity support will be removed in a future version of native ATLAS
[2026-01-21 06:50:35] Please install apptainer instead following the instructions at https://apptainer.org/docs/admin/main/installation.html
[2026-01-21 06:50:35] Checking singularity works with /usr/local/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-21 06:50:55] singularity works
[2026-01-21 06:50:55] Set ATHENA_PROC_NUMBER=12
[2026-01-21 06:50:55] Set ATHENA_CORE_NUMBER=12
[2026-01-21 06:50:55] Starting ATLAS job with PandaID=6976934751
[2026-01-21 06:50:55] Running command: /usr/local/bin/singularity exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-21 08:06:37]  *** The last 200 lines of the pilot log: ***
[2026-01-21 08:06:37]  protocol_id=None
[2026-01-21 08:06:37]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-21 08:06:37]  replicas=None
[2026-01-21 08:06:37]  scope=mc23_13p6TeV
[2026-01-21 08:06:37]  status=None
[2026-01-21 08:06:37]  status_code=0
[2026-01-21 08:06:37]  storage_token=
[2026-01-21 08:06:37]  surl=/var/lib/boinc-client/slots/1/PanDA_Pilot-6976934751/log.48299517._000660.job.log.tgz.1
[2026-01-21 08:06:37]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/33/05/log.48299517._000660.job.log.tgz.1
[2026-01-21 08:06:37]  workdir=None
[2026-01-21 08:06:37] ]
[2026-01-21 08:06:37] 2026-01-21 13:05:42,620 | INFO     | transferring file log.48299517._000660.job.log.tgz.1 from /var/lib/boinc-client/slots/1/PanDA_Pilot-6976934751/log.48299517._000660.job.log.tgz.1 to /var/lib/boinc
[2026-01-21 08:06:37] 2026-01-21 13:05:42,620 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-6976934751/log.48299517._000660.job.log.tgz.1 /var/lib/boinc-client/slots/1/log.482995
[2026-01-21 08:06:37] 2026-01-21 13:05:42,633 | INFO     | adding to output.list: log.48299517._000660.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/33/05/log.48299517._000660.job.log.tg
[2026-01-21 08:06:37] 2026-01-21 13:05:42,634 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-21 08:06:37] 2026-01-21 13:05:42,634 | INFO     | summary of transferred files:
[2026-01-21 08:06:37] 2026-01-21 13:05:42,634 | INFO     |  -- lfn=log.48299517._000660.job.log.tgz.1, status_code=0, status=transferred
[2026-01-21 08:06:37] 2026-01-21 13:05:42,634 | INFO     | stage-out finished correctly
[2026-01-21 08:06:37] 2026-01-21 13:05:43,500 | INFO     | time since job start (4399s) is within the limit (349056.0s)
[2026-01-21 08:06:37] 2026-01-21 13:05:44,203 | WARNING  | process 232754 can no longer be monitored (due to stat problems) - aborting
[2026-01-21 08:06:37] 2026-01-21 13:05:44,203 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6976934751/memory_monitor_summary.json (trf name=prmon)
[2026-01-21 08:06:37] 2026-01-21 13:05:44,420 | INFO     | number of running child processes to parent process 232754: 1
[2026-01-21 08:06:37] 2026-01-21 13:05:44,420 | INFO     | maximum number of monitored processes: 6
[2026-01-21 08:06:37] 2026-01-21 13:05:45,504 | INFO     | time since job start (4401s) is within the limit (349056.0s)
[2026-01-21 08:06:37] 2026-01-21 13:05:45,996 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-21 08:06:37] 2026-01-21 13:05:46,804 | INFO     | PID=213806 has CPU usage=9.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-21 08:06:37] 2026-01-21 13:05:46,804 | INFO     | .. there are 4 such processes running
[2026-01-21 08:06:37] 2026-01-21 13:05:46,924 | INFO     | monitor loop #331: job 0:6976934751 is in state 'finished'
[2026-01-21 08:06:37] 2026-01-21 13:05:46,924 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-21 08:06:37] 2026-01-21 13:05:47,805 | INFO     | time since job start (4403s) is within the limit (349056.0s)
[2026-01-21 08:06:37] 2026-01-21 13:05:47,845 | INFO     | job 6976934751 has state=finished
[2026-01-21 08:06:37] 2026-01-21 13:05:47,846 | INFO     | preparing for final server update for job 6976934751 in state='finished'
[2026-01-21 08:06:37] 2026-01-21 13:05:47,846 | INFO     | reading metadata from: /var/lib/boinc-client/slots/1/PanDA_Pilot-6976934751/jobReport.json
[2026-01-21 08:06:37] 2026-01-21 13:05:47,849 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/1/workernode_map.json
[2026-01-21 08:06:37] 2026-01-21 13:05:47,850 | INFO     | this job has now completed (state=finished)
[2026-01-21 08:06:37] 2026-01-21 13:05:47,850 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-21 08:06:37] 2026-01-21 13:05:47,850 | INFO     | log transfer has been attempted: DONE
[2026-01-21 08:06:37] 2026-01-21 13:05:47,850 | INFO     | job 6976934751 has finished - writing final server update
[2026-01-21 08:06:37] 2026-01-21 13:05:47,851 | INFO     | total number of processed events: 400 (read)
[2026-01-21 08:06:37] 2026-01-21 13:05:47,877 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6976934751/memory_monitor_summary.json (trf name=prmon)
[2026-01-21 08:06:37] 2026-01-21 13:05:47,878 | INFO     | extracted standard info from prmon json
[2026-01-21 08:06:37] 2026-01-21 13:05:47,878 | INFO     | extracted standard memory fields from prmon json
[2026-01-21 08:06:37] 2026-01-21 13:05:47,878 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-21 08:06:37] 2026-01-21 13:05:47,878 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-21 08:06:37] 2026-01-21 13:05:47,879 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-21 08:06:37] 2026-01-21 13:05:47,880 | INFO     | fitting pss+swap vs Time
[2026-01-21 08:06:37] 2026-01-21 13:05:47,881 | INFO     | sum of square deviations: 85136480.0
[2026-01-21 08:06:37] 2026-01-21 13:05:47,881 | INFO     | sum of deviations: 23716824461.000004
[2026-01-21 08:06:37] 2026-01-21 13:05:47,881 | INFO     | mean x: 1768998623.0
[2026-01-21 08:06:37] 2026-01-21 13:05:47,881 | INFO     | mean y: 2489943.5384615385
[2026-01-21 08:06:37] 2026-01-21 13:05:47,881 | INFO     | intersect: -492794837517.5185
[2026-01-21 08:06:37] 2026-01-21 13:05:47,882 | INFO     | chi2: 3.224855631542243
[2026-01-21 08:06:37] 2026-01-21 13:05:47,882 | INFO     | current memory leak: 278.57 B/s (using 65 data points, chi2=3.22)
[2026-01-21 08:06:37] 2026-01-21 13:05:47,882 | INFO     | could have reported an average CPU frequency of 1299 MHz (6 samples)
[2026-01-21 08:06:37] 2026-01-21 13:05:47,882 | INFO     | ..............................
[2026-01-21 08:06:37] 2026-01-21 13:05:47,882 | INFO     | . Timing measurements:
[2026-01-21 08:06:37] 2026-01-21 13:05:47,882 | INFO     | . get job = 0 s
[2026-01-21 08:06:37] 2026-01-21 13:05:47,882 | INFO     | . initial setup = 7 s
[2026-01-21 08:06:37] 2026-01-21 13:05:47,883 | INFO     | . payload setup = 7 s
[2026-01-21 08:06:37] 2026-01-21 13:05:47,883 | INFO     | . stage-in = 0 s
[2026-01-21 08:06:37] 2026-01-21 13:05:47,883 | INFO     | . payload execution = 4375 s
[2026-01-21 08:06:37] 2026-01-21 13:05:47,883 | INFO     | . stage-out = 0 s
[2026-01-21 08:06:37] 2026-01-21 13:05:47,883 | INFO     | . log creation = 0 s
[2026-01-21 08:06:37] 2026-01-21 13:05:47,883 | INFO     | ..............................
[2026-01-21 08:06:37] 2026-01-21 13:05:48,286 | INFO     | 
[2026-01-21 08:06:37] 2026-01-21 13:05:48,287 | INFO     | job summary report
[2026-01-21 08:06:37] 2026-01-21 13:05:48,287 | INFO     | --------------------------------------------------
[2026-01-21 08:06:37] 2026-01-21 13:05:48,287 | INFO     | PanDA job id: 6976934751
[2026-01-21 08:06:37] 2026-01-21 13:05:48,287 | INFO     | task id: 48299517
[2026-01-21 08:06:37] 2026-01-21 13:05:48,287 | INFO     | errors: (none)
[2026-01-21 08:06:37] 2026-01-21 13:05:48,287 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-21 08:06:37] 2026-01-21 13:05:48,288 | INFO     | pilot state: finished 
[2026-01-21 08:06:37] 2026-01-21 13:05:48,288 | INFO     | transexitcode: 0
[2026-01-21 08:06:37] 2026-01-21 13:05:48,288 | INFO     | exeerrorcode: 0
[2026-01-21 08:06:37] 2026-01-21 13:05:48,288 | INFO     | exeerrordiag: 
[2026-01-21 08:06:37] 2026-01-21 13:05:48,288 | INFO     | exitcode: 0
[2026-01-21 08:06:37] 2026-01-21 13:05:48,288 | INFO     | exitmsg: OK
[2026-01-21 08:06:37] 2026-01-21 13:05:48,288 | INFO     | cpuconsumptiontime: 41741 s
[2026-01-21 08:06:37] 2026-01-21 13:05:48,288 | INFO     | nevents: 400
[2026-01-21 08:06:37] 2026-01-21 13:05:48,288 | INFO     | neventsw: 0
[2026-01-21 08:06:37] 2026-01-21 13:05:48,288 | INFO     | pid: 232754
[2026-01-21 08:06:37] 2026-01-21 13:05:48,288 | INFO     | pgrp: 232754
[2026-01-21 08:06:37] 2026-01-21 13:05:48,288 | INFO     | corecount: 12
[2026-01-21 08:06:37] 2026-01-21 13:05:48,289 | INFO     | event service: False
[2026-01-21 08:06:37] 2026-01-21 13:05:48,289 | INFO     | sizes: {0: 2284347, 11: 2284347, 4386: 2310350, 4387: 2310349, 4388: 2319417, 4391: 2319473, 4393: 2319795}
[2026-01-21 08:06:37] 2026-01-21 13:05:48,289 | INFO     | --------------------------------------------------
[2026-01-21 08:06:37] 2026-01-21 13:05:48,289 | INFO     | 
[2026-01-21 08:06:37] 2026-01-21 13:05:48,289 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2026-01-21 08:06:37] 2026-01-21 13:05:48,307 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-21 08:06:37] 2026-01-21 13:05:48,308 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-21 08:06:37] 2026-01-21 13:05:48,308 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-21 08:06:37] 2026-01-21 13:05:48,308 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-21 08:06:37] 2026-01-21 13:05:48,308 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-21 08:06:37] 2026-01-21 13:05:48,308 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-21 08:06:37] 2026-01-21 13:05:48,308 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-21 08:06:37] 2026-01-21 13:05:48,308 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-21 08:06:37] 2026-01-21 13:05:48,308 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-21 08:06:37] 2026-01-21 13:05:48,308 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-21 08:06:37] 2026-01-21 13:05:48,309 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-21 08:06:37] 2026-01-21 13:05:48,309 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-21 08:06:37] 2026-01-21 13:05:48,309 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-21 08:06:37] 2026-01-21 13:05:48,309 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-21 08:06:37] 2026-01-21 13:05:48,309 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-21 08:06:37] 2026-01-21 13:05:48,309 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-21 08:06:37] 2026-01-21 13:05:48,309 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-21 08:06:37] 2026-01-21 13:05:48,309 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-21 08:06:37] 2026-01-21 13:05:48,309 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-21 08:06:37] 2026-01-21 13:05:48,310 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-21 08:06:37] 2026-01-21 13:05:48,310 | INFO     | job 6976934751 has completed (purged errors)
[2026-01-21 08:06:37] 2026-01-21 13:05:48,310 | INFO     | overall cleanup function is called
[2026-01-21 08:06:37] 2026-01-21 13:05:49,315 | INFO     | --- collectZombieJob: --- 10, [232754]
[2026-01-21 08:06:37] 2026-01-21 13:05:49,316 | INFO     | zombie collector waiting for pid 232754
[2026-01-21 08:06:37] 2026-01-21 13:05:49,316 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-21 08:06:37] 2026-01-21 13:05:49,316 | INFO     | collected zombie processes
[2026-01-21 08:06:37] 2026-01-21 13:05:49,316 | INFO     | will attempt to kill all subprocesses of pid=232754
[2026-01-21 08:06:37] 2026-01-21 13:05:49,491 | INFO     | process IDs to be killed: [232754] (in reverse order)
[2026-01-21 08:06:37] 2026-01-21 13:05:49,547 | WARNING  | found no corresponding commands to process id(s)
[2026-01-21 08:06:37] 2026-01-21 13:05:49,548 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-21 08:06:37] 2026-01-21 13:05:49,554 | INFO     | did not find any defunct processes belonging to 232754
[2026-01-21 08:06:37] 2026-01-21 13:05:49,560 | INFO     | did not find any defunct processes belonging to 232754
[2026-01-21 08:06:37] 2026-01-21 13:05:49,560 | INFO     | ready for new job
[2026-01-21 08:06:37] 2026-01-21 13:05:49,560 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-21 08:06:37] 2026-01-21 13:05:49,562 | INFO     | **************************************
[2026-01-21 08:06:37] 2026-01-21 13:05:49,562 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-21 08:06:37] 2026-01-21 13:05:49,562 | INFO     | **************************************
[2026-01-21 08:06:37] 2026-01-21 13:05:49,562 | INFO     | 
[2026-01-21 08:06:37] 2026-01-21 13:05:49,582 | INFO     | architecture information:
[2026-01-21 08:06:37] 2026-01-21 13:05:49,583 | INFO     | executing command: cat /etc/os-release
[2026-01-21 08:06:37] 2026-01-21 13:05:49,593 | INFO     | cat /etc/os-release:
[2026-01-21 08:06:37] NAME="CentOS Linux"
[2026-01-21 08:06:37] VERSION="7 (Core)"
[2026-01-21 08:06:37] ID="centos"
[2026-01-21 08:06:37] ID_LIKE="rhel fedora"
[2026-01-21 08:06:37] VERSION_ID="7"
[2026-01-21 08:06:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-21 08:06:37] ANSI_COLOR="0;31"
[2026-01-21 08:06:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-21 08:06:37] HOME_URL="https://www.centos.org/"
[2026-01-21 08:06:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-21 08:06:37] 
[2026-01-21 08:06:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-21 08:06:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-21 08:06:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-21 08:06:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-21 08:06:37] 
[2026-01-21 08:06:37] 2026-01-21 13:05:49,594 | INFO     | **************************************
[2026-01-21 08:06:37] 2026-01-21 13:05:50,096 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2026-01-21 08:06:37] 2026-01-21 13:05:50,107 | INFO     | sufficient remaining disk space (391432372224 B)
[2026-01-21 08:06:37] 2026-01-21 13:05:50,107 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-21 08:06:37] 2026-01-21 13:05:50,107 | INFO     | current server update state: UPDATING_FINAL
[2026-01-21 08:06:37] 2026-01-21 13:05:50,108 | INFO     | update_server=False
[2026-01-21 08:06:37] 2026-01-21 13:05:50,108 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-21 08:06:37] 2026-01-21 13:05:50,411 | INFO     | all data control threads have been joined
[2026-01-21 08:06:37] 2026-01-21 13:05:50,435 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-21 08:06:37] 2026-01-21 13:05:50,436 | INFO     | aborting loop
[2026-01-21 08:06:37] 2026-01-21 13:05:50,643 | INFO     | all payload control threads have been joined
[2026-01-21 08:06:37] 2026-01-21 13:05:50,691 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-21 08:06:37] 2026-01-21 13:05:50,727 | INFO     | all job control threads have been joined
[2026-01-21 08:06:37] 2026-01-21 13:05:51,113 | INFO     | [job] retrieve thread has finished
[2026-01-21 08:06:37] 2026-01-21 13:05:51,417 | INFO     | [data] control thread has finished
[2026-01-21 08:06:37] 2026-01-21 13:05:51,441 | INFO     | [job] job monitor thread has finished
[2026-01-21 08:06:37] 2026-01-21 13:05:51,501 | INFO     | [payload] execute_payloads thread has finished
[2026-01-21 08:06:37] 2026-01-21 13:05:51,649 | INFO     | [payload] control thread has finished
[2026-01-21 08:06:37] 2026-01-21 13:05:51,731 | INFO     | [job] control thread has finished
[2026-01-21 08:06:37] 2026-01-21 13:05:51,791 | INFO     | [job] validate thread has finished
[2026-01-21 08:06:37] 2026-01-21 13:05:52,035 | INFO     | [payload] failed_post thread has finished
[2026-01-21 08:06:37] 2026-01-21 13:05:52,084 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-21 08:06:37] 2026-01-21 13:05:52,291 | INFO     | [payload] validate_pre thread has finished
[2026-01-21 08:06:37] 2026-01-21 13:05:52,295 | INFO     | [job] create_data_payload thread has finished
[2026-01-21 08:06:37] 2026-01-21 13:05:52,531 | INFO     | [data] copytool_in thread has finished
[2026-01-21 08:06:37] 2026-01-21 13:05:52,627 | INFO     | [payload] validate_post thread has finished
[2026-01-21 08:06:37] 2026-01-21 13:05:52,695 | INFO     | [data] copytool_out thread has finished
[2026-01-21 08:06:37] 2026-01-21 13:05:52,983 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-21 08:06:37] 2026-01-21 13:05:53,987 | INFO     | [job] queue monitor thread has finished
[2026-01-21 08:06:37] 2026-01-21 13:05:56,090 | INFO     | [data] queue_monitor thread has finished
[2026-01-21 08:06:37] 2026-01-21 13:06:01,023 | INFO     | job.realtimelogging is not enabled
[2026-01-21 08:06:37] 2026-01-21 13:06:02,027 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-21 08:06:37] 2026-01-21 13:06:21,168 | INFO     | PID=213806 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-21 08:06:37] 2026-01-21 13:06:21,168 | INFO     | .. there are 4 such processes running
[2026-01-21 08:06:37] 2026-01-21 13:06:21,169 | INFO     | found 0 job(s) in 20 queues
[2026-01-21 08:06:37] 2026-01-21 13:06:21,169 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-21 08:06:37] 2026-01-21 13:06:21,169 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-21 08:06:37] 2026-01-21 13:06:30,595 | INFO     | [monitor] cgroup control has ended
[2026-01-21 08:06:37] 2026-01-21 13:06:32,344 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140574247249728)>', '<ExcThread(monitor, started 140573541398272)>']
[2026-01-21 08:06:37] 2026-01-21 13:06:33,215 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-21 08:06:37] 2026-01-21 13:06:33,216 | INFO     | [monitor] control thread has ended
[2026-01-21 08:06:37] 2026-01-21 13:06:37,367 | INFO     | all workflow threads have been joined
[2026-01-21 08:06:37] 2026-01-21 13:06:37,368 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-21 08:06:37] 2026-01-21 13:06:37,368 | INFO     | traces error code: 0
[2026-01-21 08:06:37] 2026-01-21 13:06:37,368 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-21 08:06:37] 2026-01-21 13:06:37,466 [wrapper] ==== pilot stdout END ====
[2026-01-21 08:06:37] 2026-01-21 13:06:37,468 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-21 08:06:37] 2026-01-21 13:06:37,469 [wrapper] pilotpid: 213806
[2026-01-21 08:06:37] 2026-01-21 13:06:37,471 [wrapper] Pilot exit status: 0
[2026-01-21 08:06:37] 2026-01-21 13:06:37,478 [wrapper] pandaids: 6976934751
[2026-01-21 08:06:37] 2026-01-21 13:06:37,508 [wrapper] cleanup supervisor_pilot  267639 213808
[2026-01-21 08:06:37] 2026-01-21 13:06:37,511 [wrapper] Test setup, not cleaning
[2026-01-21 08:06:37] 2026-01-21 13:06:37,513 [wrapper] apfmon messages muted
[2026-01-21 08:06:37] 2026-01-21 13:06:37,515 [wrapper] ==== wrapper stdout END ====
[2026-01-21 08:06:37] 2026-01-21 13:06:37,517 [wrapper] ==== wrapper stderr END ====
[2026-01-21 08:06:37]  *** Error codes and diagnostics ***
[2026-01-21 08:06:37]     "exeErrorCode": 0,
[2026-01-21 08:06:37]     "exeErrorDiag": "",
[2026-01-21 08:06:37]     "pilotErrorCode": 0,
[2026-01-21 08:06:37]     "pilotErrorDiag": "",
[2026-01-21 08:06:37]  *** Listing of results directory ***
[2026-01-21 08:06:37] total 436592
[2026-01-21 08:06:37] -rw-r--r-- 1 boinc boinc    584422 Jan 20 16:34 pilot3.tar.gz
[2026-01-21 08:06:37] -rwx------ 1 boinc boinc     36322 Jan 20 16:35 runpilot2-wrapper.sh
[2026-01-21 08:06:37] -rw-r--r-- 1 boinc boinc      5111 Jan 20 16:36 queuedata.json
[2026-01-21 08:06:37] -rw-r--r-- 1 boinc boinc       100 Jan 21 06:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-21 08:06:37] -rwxr-xr-x 1 boinc boinc      7986 Jan 21 06:46 run_atlas
[2026-01-21 08:06:37] -rw-r--r-- 1 boinc boinc       105 Jan 21 06:46 job.xml
[2026-01-21 08:06:37] -rw-r--r-- 2 boinc boinc 265940395 Jan 21 06:46 EVNT.48299515._000027.pool.root.1
[2026-01-21 08:06:37] -rw-r--r-- 2 boinc boinc     15845 Jan 21 06:46 start_atlas.sh
[2026-01-21 08:06:37] drwxrwx--x 2 boinc boinc      4096 Jan 21 06:46 shared
[2026-01-21 08:06:37] -rw-r--r-- 2 boinc boinc    597769 Jan 21 06:46 input.tar.gz
[2026-01-21 08:06:37] -rw-r--r-- 1 boinc boinc         0 Jan 21 06:46 boinc_lockfile
[2026-01-21 08:06:37] -rw-r--r-- 1 boinc boinc      2597 Jan 21 06:50 pandaJob.out
[2026-01-21 08:06:37] -rw------- 1 boinc boinc        50 Jan 21 06:51 setup.sh.local
[2026-01-21 08:06:37] -rw------- 1 boinc boinc   1000361 Jan 21 06:52 agis_schedconf.cvmfs.json
[2026-01-21 08:06:37] -rw------- 1 boinc boinc   1516246 Jan 21 06:52 agis_ddmendpoints.agis.ALL.json
[2026-01-21 08:06:37] -rw------- 1 boinc boinc       430 Jan 21 06:52 workernode_map.json
[2026-01-21 08:06:37] drwx------ 5 boinc boinc      4096 Jan 21 06:52 pilot3
[2026-01-21 08:06:37] -rw-r--r-- 1 boinc boinc      7581 Jan 21 06:52 init_data.xml
[2026-01-21 08:06:37] -rw------- 1 boinc boinc 175118937 Jan 21 08:05 HITS.48299517._000660.pool.root.1
[2026-01-21 08:06:37] -rw-r--r-- 1 boinc boinc       529 Jan 21 08:05 boinc_task_state.xml
[2026-01-21 08:06:37] -rw------- 1 boinc boinc        95 Jan 21 08:05 pilot_heartbeat.json
[2026-01-21 08:06:37] -rw------- 1 boinc boinc      1034 Jan 21 08:05 memory_monitor_summary.json
[2026-01-21 08:06:37] -rw------- 1 boinc boinc    375324 Jan 21 08:05 log.48299517._000660.job.log.tgz.1
[2026-01-21 08:06:37] -rw------- 1 boinc boinc      6345 Jan 21 08:05 heartbeat.json
[2026-01-21 08:06:37] -rw-r--r-- 1 boinc boinc        27 Jan 21 08:06 wrapper_checkpoint.txt
[2026-01-21 08:06:37] -rw-r--r-- 1 boinc boinc      8192 Jan 21 08:06 boinc_mmap_file
[2026-01-21 08:06:37] -rw------- 1 boinc boinc      4898 Jan 21 08:06 pilotlog.txt
[2026-01-21 08:06:37] -rw------- 1 boinc boinc    658385 Jan 21 08:06 log.48299517._000660.job.log.1
[2026-01-21 08:06:37] -rw------- 1 boinc boinc       357 Jan 21 08:06 output.list
[2026-01-21 08:06:37] -rw-r--r-- 1 boinc boinc       620 Jan 21 08:06 runtime_log
[2026-01-21 08:06:37] -rw------- 1 boinc boinc   1054720 Jan 21 08:06 result.tar.gz
[2026-01-21 08:06:37] -rw-r--r-- 1 boinc boinc      9471 Jan 21 08:06 runtime_log.err
[2026-01-21 08:06:37] -rw------- 1 boinc boinc       650 Jan 21 08:06 q5hKDmKZY28n9Rq4apOajLDm4fhM0noT9bVo0NGKDmWMqKDmN98O3m.diag
[2026-01-21 08:06:37] -rw-r--r-- 1 boinc boinc     22267 Jan 21 08:06 stderr.txt
[2026-01-21 08:06:37] HITS file was successfully produced:
[2026-01-21 08:06:37] -rw------- 1 boinc boinc 175118937 Jan 21 08:05 shared/HITS.pool.root.1
[2026-01-21 08:06:37]  *** Contents of shared directory: ***
[2026-01-21 08:06:37] total 432364
[2026-01-21 08:06:37] -rw-r--r-- 2 boinc boinc 265940395 Jan 21 06:46 ATLAS.root_0
[2026-01-21 08:06:37] -rw-r--r-- 2 boinc boinc     15845 Jan 21 06:46 start_atlas.sh
[2026-01-21 08:06:37] -rw-r--r-- 2 boinc boinc    597769 Jan 21 06:46 input.tar.gz
[2026-01-21 08:06:37] -rw------- 1 boinc boinc 175118937 Jan 21 08:05 HITS.pool.root.1
[2026-01-21 08:06:37] -rw------- 1 boinc boinc   1054720 Jan 21 08:06 result.tar.gz
08:06:39 (195854): run_atlas exited; CPU time 41839.800367
08:06:39 (195854): called boinc_finish(0)

</stderr_txt>
]]>

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