Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:20:39 (1045013): wrapper (7.7.26015): starting
07:20:39 (1045013): wrapper: running run_atlas (--nthreads 4)
[2026-01-21 07:20:39] Arguments: --nthreads 4
[2026-01-21 07:20:39] Threads: 4
[2026-01-21 07:20:39] Checking for CVMFS
[2026-01-21 07:20:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-21 07:20:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-21 07:20:39] Running cvmfs_config stat atlas.cern.ch
[2026-01-21 07:20:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-21 07:20:39] 2.9.2.0 14238 158 54472 155374 1 50 30270171 36864001 0 130560 0 79675 99.977 6880 11241 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-21 07:20:39] CVMFS is ok
[2026-01-21 07:20:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-21 07:20:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-21 07:20:39] Further information can be found at the LHC@home message board.
[2026-01-21 07:20:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-21 07:20:39] Checking for apptainer binary...
[2026-01-21 07:20:39] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-21 07:20:39] Running /usr/bin/apptainer --version
[2026-01-21 07:20:39] apptainer version 1.4.1-1.1
[2026-01-21 07:20:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-21 07:20:39] thA373a
[2026-01-21 07:20:39] apptainer works
[2026-01-21 07:20:39] Set ATHENA_PROC_NUMBER=4
[2026-01-21 07:20:39] Set ATHENA_CORE_NUMBER=4
[2026-01-21 07:20:39] Starting ATLAS job with PandaID=6976883238
[2026-01-21 07:20:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-21 08:30:02]  *** The last 200 lines of the pilot log: ***
[2026-01-21 08:30:02] 2026-01-21 07:29:32,364 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-21 08:30:02] 2026-01-21 07:29:32,364 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-21 08:30:02] 2026-01-21 07:29:32,364 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-21 08:30:02] 2026-01-21 07:29:32,364 | INFO     | job 6976883238 has completed (purged errors)
[2026-01-21 08:30:02] 2026-01-21 07:29:32,364 | INFO     | overall cleanup function is called
[2026-01-21 08:30:02] 2026-01-21 07:29:33,370 | INFO     | --- collectZombieJob: --- 10, [1072410]
[2026-01-21 08:30:02] 2026-01-21 07:29:33,370 | INFO     | zombie collector waiting for pid 1072410
[2026-01-21 08:30:02] 2026-01-21 07:29:33,370 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-21 08:30:02] 2026-01-21 07:29:33,370 | INFO     | collected zombie processes
[2026-01-21 08:30:02] 2026-01-21 07:29:33,370 | INFO     | will attempt to kill all subprocesses of pid=1072410
[2026-01-21 08:30:02] 2026-01-21 07:29:33,409 | INFO     | process IDs to be killed: [1072410] (in reverse order)
[2026-01-21 08:30:02] 2026-01-21 07:29:33,441 | WARNING  | found no corresponding commands to process id(s)
[2026-01-21 08:30:02] 2026-01-21 07:29:33,442 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-21 08:30:02] 2026-01-21 07:29:33,443 | INFO     | did not find any defunct processes belonging to 1072410
[2026-01-21 08:30:02] 2026-01-21 07:29:33,445 | INFO     | did not find any defunct processes belonging to 1072410
[2026-01-21 08:30:02] 2026-01-21 07:29:33,445 | INFO     | ready for new job
[2026-01-21 08:30:02] 2026-01-21 07:29:33,445 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-21 08:30:02] 2026-01-21 07:29:33,445 | INFO     | **************************************
[2026-01-21 08:30:02] 2026-01-21 07:29:33,445 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-21 08:30:02] 2026-01-21 07:29:33,445 | INFO     | **************************************
[2026-01-21 08:30:02] 2026-01-21 07:29:33,445 | INFO     | 
[2026-01-21 08:30:02] 2026-01-21 07:29:33,446 | INFO     | architecture information:
[2026-01-21 08:30:02] 2026-01-21 07:29:33,446 | INFO     | executing command: cat /etc/os-release
[2026-01-21 08:30:02] 2026-01-21 07:29:33,460 | INFO     | cat /etc/os-release:
[2026-01-21 08:30:02] NAME="CentOS Linux"
[2026-01-21 08:30:02] VERSION="7 (Core)"
[2026-01-21 08:30:02] ID="centos"
[2026-01-21 08:30:02] ID_LIKE="rhel fedora"
[2026-01-21 08:30:02] VERSION_ID="7"
[2026-01-21 08:30:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-21 08:30:02] ANSI_COLOR="0;31"
[2026-01-21 08:30:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-21 08:30:02] HOME_URL="https://www.centos.org/"
[2026-01-21 08:30:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-21 08:30:02] 
[2026-01-21 08:30:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-21 08:30:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-21 08:30:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-21 08:30:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-21 08:30:02] 
[2026-01-21 08:30:02] 2026-01-21 07:29:33,460 | INFO     | **************************************
[2026-01-21 08:30:02] 2026-01-21 07:29:33,963 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-21 08:30:02] 2026-01-21 07:29:33,978 | INFO     | sufficient remaining disk space (329684877312 B)
[2026-01-21 08:30:02] 2026-01-21 07:29:33,978 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-21 08:30:02] 2026-01-21 07:29:33,978 | INFO     | current server update state: UPDATING_FINAL
[2026-01-21 08:30:02] 2026-01-21 07:29:33,978 | INFO     | update_server=False
[2026-01-21 08:30:02] 2026-01-21 07:29:33,978 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-21 08:30:02] 2026-01-21 07:29:33,978 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-21 08:30:02] 2026-01-21 07:29:33,978 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-21 08:30:02] 2026-01-21 07:29:33,979 | INFO     | found 0 job(s) in 20 queues
[2026-01-21 08:30:02] 2026-01-21 07:29:33,979 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-21 08:30:02] 2026-01-21 07:29:33,979 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-21 08:30:02] 2026-01-21 07:29:34,024 | INFO     | all job control threads have been joined
[2026-01-21 08:30:02] 2026-01-21 07:29:34,024 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-21 08:30:02] 2026-01-21 07:29:34,025 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-21 08:30:02] 2026-01-21 07:29:34,025 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-21 08:30:02] 2026-01-21 07:29:34,025 | INFO     | will abort loop
[2026-01-21 08:30:02] 2026-01-21 07:29:34,199 | INFO     | all data control threads have been joined
[2026-01-21 08:30:02] 2026-01-21 07:29:34,521 | INFO     | all payload control threads have been joined
[2026-01-21 08:30:02] 2026-01-21 07:29:34,984 | INFO     | [job] retrieve thread has finished
[2026-01-21 08:30:02] 2026-01-21 07:29:35,029 | INFO     | [job] job monitor thread has finished
[2026-01-21 08:30:02] 2026-01-21 07:29:35,029 | INFO     | [job] control thread has finished
[2026-01-21 08:30:02] 2026-01-21 07:29:35,147 | INFO     | [payload] validate_post thread has finished
[2026-01-21 08:30:02] 2026-01-21 07:29:35,204 | INFO     | [data] control thread has finished
[2026-01-21 08:30:02] 2026-01-21 07:29:35,208 | INFO     | [data] copytool_in thread has finished
[2026-01-21 08:30:02] 2026-01-21 07:29:35,527 | INFO     | [payload] control thread has finished
[2026-01-21 08:30:02] 2026-01-21 07:29:35,827 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-21 08:30:02] 2026-01-21 07:29:35,852 | INFO     | [job] validate thread has finished
[2026-01-21 08:30:02] 2026-01-21 07:29:35,875 | INFO     | [job] create_data_payload thread has finished
[2026-01-21 08:30:02] 2026-01-21 07:29:35,878 | INFO     | [payload] failed_post thread has finished
[2026-01-21 08:30:02] 2026-01-21 07:29:35,984 | INFO     | [data] copytool_out thread has finished
[2026-01-21 08:30:02] 2026-01-21 07:29:36,014 | INFO     | [payload] validate_pre thread has finished
[2026-01-21 08:30:02] 2026-01-21 07:29:36,113 | INFO     | [payload] execute_payloads thread has finished
[2026-01-21 08:30:02] 2026-01-21 07:29:36,434 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-21 08:30:02] 2026-01-21 07:29:36,875 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-21 08:30:02] 2026-01-21 07:29:37,881 | INFO     | [job] queue monitor thread has finished
[2026-01-21 08:30:02] 2026-01-21 07:29:39,833 | INFO     | [data] queue_monitor thread has finished
[2026-01-21 08:30:02] 2026-01-21 07:29:57,610 | INFO     | [monitor] cgroup control has ended
[2026-01-21 08:30:02] 2026-01-21 07:29:57,704 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140399819220800)>', '<ExcThread(monitor, started 140399007995648)>']
[2026-01-21 08:30:02] 2026-01-21 07:29:58,100 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-21 08:30:02] 2026-01-21 07:29:58,101 | INFO     | [monitor] control thread has ended
[2026-01-21 08:30:02] 2026-01-21 07:30:02,730 | INFO     | all workflow threads have been joined
[2026-01-21 08:30:02] 2026-01-21 07:30:02,730 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-21 08:30:02] 2026-01-21 07:30:02,730 | INFO     | traces error code: 0
[2026-01-21 08:30:02] 2026-01-21 07:30:02,730 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-21 08:30:02] 2026-01-21 07:30:02,811 [wrapper] ==== pilot stdout END ====
[2026-01-21 08:30:02] 2026-01-21 07:30:02,815 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-21 08:30:02] 2026-01-21 07:30:02,819 [wrapper] pilotpid: 1053512
[2026-01-21 08:30:02] 2026-01-21 07:30:02,823 [wrapper] Pilot exit status: 0
[2026-01-21 08:30:02] 2026-01-21 07:30:02,834 [wrapper] pandaids: 6976883238
[2026-01-21 08:30:02] 2026-01-21 07:30:02,856 [wrapper] cleanup supervisor_pilot 3065581 1053513
[2026-01-21 08:30:02] 2026-01-21 07:30:02,860 [wrapper] Test setup, not cleaning
[2026-01-21 08:30:02] 2026-01-21 07:30:02,863 [wrapper] apfmon messages muted
[2026-01-21 08:30:02] 2026-01-21 07:30:02,867 [wrapper] ==== wrapper stdout END ====
[2026-01-21 08:30:02] 2026-01-21 07:30:02,870 [wrapper] ==== wrapper stderr END ====
[2026-01-21 08:30:02]  *** Error codes and diagnostics ***
[2026-01-21 08:30:02]     "exeErrorCode": 0,
[2026-01-21 08:30:02]     "exeErrorDiag": "",
[2026-01-21 08:30:02]     "pilotErrorCode": 0,
[2026-01-21 08:30:02]     "pilotErrorDiag": "",
[2026-01-21 08:30:02]  *** Listing of results directory ***
[2026-01-21 08:30:02] total 426072
[2026-01-21 08:30:02] -rw-r--r-- 1 boinc boinc    584422 Jan 20 21:27 pilot3.tar.gz
[2026-01-21 08:30:02] -rwx------ 1 boinc boinc     36322 Jan 20 21:28 runpilot2-wrapper.sh
[2026-01-21 08:30:02] -rw-r--r-- 1 boinc boinc      5111 Jan 20 21:28 queuedata.json
[2026-01-21 08:30:02] -rw-r--r-- 1 boinc boinc       100 Jan 21 07:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-21 08:30:02] -rwxr-xr-x 1 boinc boinc      7986 Jan 21 07:20 run_atlas
[2026-01-21 08:30:02] -rw-r--r-- 1 boinc boinc       105 Jan 21 07:20 job.xml
[2026-01-21 08:30:02] -rw-r--r-- 2 boinc boinc 256342097 Jan 21 07:20 EVNT.48299635._000036.pool.root.1
[2026-01-21 08:30:02] -rw-r--r-- 2 boinc boinc    597772 Jan 21 07:20 input.tar.gz
[2026-01-21 08:30:02] -rw-r--r-- 2 boinc boinc     15845 Jan 21 07:20 start_atlas.sh
[2026-01-21 08:30:02] drwxrwx--x 2 boinc boinc      4096 Jan 21 07:20 shared
[2026-01-21 08:30:02] -rw-r--r-- 1 boinc boinc         0 Jan 21 07:20 boinc_setup_complete
[2026-01-21 08:30:02] -rw-r--r-- 1 boinc boinc      6376 Jan 21 07:20 init_data.xml
[2026-01-21 08:30:02] -rw-r--r-- 1 boinc boinc         0 Jan 21 07:20 boinc_lockfile
[2026-01-21 08:30:02] -rw-r--r-- 1 boinc boinc      2619 Jan 21 07:20 pandaJob.out
[2026-01-21 08:30:02] -rw------- 1 boinc boinc   1000361 Jan 21 07:20 agis_schedconf.cvmfs.json
[2026-01-21 08:30:02] -rw------- 1 boinc boinc   1516246 Jan 21 07:20 agis_ddmendpoints.agis.ALL.json
[2026-01-21 08:30:02] -rw------- 1 boinc boinc       428 Jan 21 07:20 workernode_map.json
[2026-01-21 08:30:02] drwx------ 5 boinc boinc      4096 Jan 21 07:20 pilot3
[2026-01-21 08:30:02] -rw-r--r-- 1 boinc boinc       530 Jan 21 08:29 boinc_task_state.xml
[2026-01-21 08:30:02] -rw------- 1 boinc boinc 174302673 Jan 21 08:29 HITS.48299637._000885.pool.root.1
[2026-01-21 08:30:02] -rw------- 1 boinc boinc        95 Jan 21 08:29 pilot_heartbeat.json
[2026-01-21 08:30:02] -rw------- 1 boinc boinc      1016 Jan 21 08:29 memory_monitor_summary.json
[2026-01-21 08:30:02] -rw------- 1 boinc boinc    252982 Jan 21 08:29 log.48299637._000885.job.log.tgz.1
[2026-01-21 08:30:02] -rw------- 1 boinc boinc      6298 Jan 21 08:29 heartbeat.json
[2026-01-21 08:30:02] -rw-r--r-- 1 boinc boinc      8192 Jan 21 08:29 boinc_mmap_file
[2026-01-21 08:30:02] -rw-r--r-- 1 boinc boinc        27 Jan 21 08:29 wrapper_checkpoint.txt
[2026-01-21 08:30:02] -rw------- 1 boinc boinc      4738 Jan 21 08:30 pilotlog.txt
[2026-01-21 08:30:02] -rw------- 1 boinc boinc    613700 Jan 21 08:30 log.48299637._000885.job.log.1
[2026-01-21 08:30:02] -rw------- 1 boinc boinc       357 Jan 21 08:30 output.list
[2026-01-21 08:30:02] -rw-r--r-- 1 boinc boinc       620 Jan 21 08:30 runtime_log
[2026-01-21 08:30:02] -rw------- 1 boinc boinc    880640 Jan 21 08:30 result.tar.gz
[2026-01-21 08:30:02] -rw-r--r-- 1 boinc boinc      8901 Jan 21 08:30 runtime_log.err
[2026-01-21 08:30:02] -rw------- 1 boinc boinc       658 Jan 21 08:30 29ZNDmgVX28n9Rq4apOajLDm4fhM0noT9bVo0NGKDmUDqKDmhpXpdn.diag
[2026-01-21 08:30:02] -rw-r--r-- 1 boinc boinc     11254 Jan 21 08:30 stderr.txt
[2026-01-21 08:30:02] HITS file was successfully produced:
[2026-01-21 08:30:02] -rw------- 1 boinc boinc 174302673 Jan 21 08:29 shared/HITS.pool.root.1
[2026-01-21 08:30:02]  *** Contents of shared directory: ***
[2026-01-21 08:30:02] total 422024
[2026-01-21 08:30:02] -rw-r--r-- 2 boinc boinc 256342097 Jan 21 07:20 ATLAS.root_0
[2026-01-21 08:30:02] -rw-r--r-- 2 boinc boinc    597772 Jan 21 07:20 input.tar.gz
[2026-01-21 08:30:02] -rw-r--r-- 2 boinc boinc     15845 Jan 21 07:20 start_atlas.sh
[2026-01-21 08:30:02] -rw------- 1 boinc boinc 174302673 Jan 21 08:29 HITS.pool.root.1
[2026-01-21 08:30:02] -rw------- 1 boinc boinc    880640 Jan 21 08:30 result.tar.gz
08:30:04 (1045013): run_atlas exited; CPU time 15366.802958
08:30:04 (1045013): called boinc_finish(0)

</stderr_txt>
]]>

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