Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:43:35 (1901000): wrapper (7.7.26015): starting
05:43:35 (1901000): wrapper: running run_atlas (--nthreads 4)
[2026-01-22 05:43:35] Arguments: --nthreads 4
[2026-01-22 05:43:35] Threads: 4
[2026-01-22 05:43:35] Checking for CVMFS
[2026-01-22 05:43:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-22 05:43:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-22 05:43:35] Running cvmfs_config stat atlas.cern.ch
[2026-01-22 05:43:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-22 05:43:35] 2.13.3.0 897907 1431 55652 155392 3 188 5597412 6144001 2669 130560 0 2420453 99.996 40491 102 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://192.168.1.253:3128 1
[2026-01-22 05:43:35] CVMFS is ok
[2026-01-22 05:43:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-22 05:43:35] Checking for apptainer binary...
[2026-01-22 05:43:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-22 05:43:35] Running /usr/bin/apptainer --version
[2026-01-22 05:43:35] apptainer version 1.4.0
[2026-01-22 05:43:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-22 05:43:35] Zen
[2026-01-22 05:43:35] apptainer works
[2026-01-22 05:43:35] Set ATHENA_PROC_NUMBER=4
[2026-01-22 05:43:35] Set ATHENA_CORE_NUMBER=4
[2026-01-22 05:43:35] Starting ATLAS job with PandaID=6976882055
[2026-01-22 05:43:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/michael/Boinc/BOINC/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-22 07:18:26]  *** The last 200 lines of the pilot log: ***
[2026-01-22 07:18:26]  is_altstaged=None
[2026-01-22 07:18:26]  is_tar=False
[2026-01-22 07:18:26]  lfn=log.48299637._000299.job.log.tgz.1
[2026-01-22 07:18:26]  mtime=0
[2026-01-22 07:18:26]  protocol_id=None
[2026-01-22 07:18:26]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-22 07:18:26]  replicas=None
[2026-01-22 07:18:26]  scope=mc23_13p6TeV
[2026-01-22 07:18:26]  status=None
[2026-01-22 07:18:26]  status_code=0
[2026-01-22 07:18:26]  storage_token=
[2026-01-22 07:18:26]  surl=/home/michael/Boinc/BOINC/slots/0/PanDA_Pilot-6976882055/log.48299637._000299.job.log.tgz.1
[2026-01-22 07:18:26]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/86/ff/log.48299637._000299.job.log.tgz.1
[2026-01-22 07:18:26]  workdir=None
[2026-01-22 07:18:26] ]
[2026-01-22 07:18:26] 2026-01-21 20:17:49,815 | INFO     | transferring file log.48299637._000299.job.log.tgz.1 from /home/michael/Boinc/BOINC/slots/0/PanDA_Pilot-6976882055/log.48299637._000299.job.log.tgz.1 to /home/mich
[2026-01-22 07:18:26] 2026-01-21 20:17:49,815 | INFO     | executing command: /usr/bin/env mv /home/michael/Boinc/BOINC/slots/0/PanDA_Pilot-6976882055/log.48299637._000299.job.log.tgz.1 /home/michael/Boinc/BOINC/slots/0/lo
[2026-01-22 07:18:26] 2026-01-21 20:17:49,832 | INFO     | adding to output.list: log.48299637._000299.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/86/ff/log.48299637._000299.job.log.tg
[2026-01-22 07:18:26] 2026-01-21 20:17:49,832 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-22 07:18:26] 2026-01-21 20:17:49,832 | INFO     | summary of transferred files:
[2026-01-22 07:18:26] 2026-01-21 20:17:49,832 | INFO     |  -- lfn=log.48299637._000299.job.log.tgz.1, status_code=0, status=transferred
[2026-01-22 07:18:26] 2026-01-21 20:17:49,833 | INFO     | stage-out finished correctly
[2026-01-22 07:18:26] 2026-01-21 20:17:49,896 | INFO     | PID=1904816 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-22 07:18:26] 2026-01-21 20:17:49,896 | INFO     | .. there are 4 such processes running
[2026-01-22 07:18:26] 2026-01-21 20:17:50,156 | INFO     | monitor loop #427: job 0:6976882055 is in state 'finished'
[2026-01-22 07:18:26] 2026-01-21 20:17:50,157 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-22 07:18:26] 2026-01-21 20:17:50,897 | INFO     | time since job start (5642s) is within the limit (349056.0s)
[2026-01-22 07:18:26] 2026-01-21 20:17:51,988 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-22 07:18:26] 2026-01-21 20:17:52,658 | INFO     | monitor loop #428: job 0:6976882055 is in state 'finished'
[2026-01-22 07:18:26] 2026-01-21 20:17:52,658 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-22 07:18:26] 2026-01-21 20:17:52,902 | INFO     | time since job start (5644s) is within the limit (349056.0s)
[2026-01-22 07:18:26] 2026-01-21 20:17:53,447 | INFO     | job 6976882055 has state=finished
[2026-01-22 07:18:26] 2026-01-21 20:17:53,448 | INFO     | preparing for final server update for job 6976882055 in state='finished'
[2026-01-22 07:18:26] 2026-01-21 20:17:53,448 | INFO     | reading metadata from: /home/michael/Boinc/BOINC/slots/0/PanDA_Pilot-6976882055/jobReport.json
[2026-01-22 07:18:26] 2026-01-21 20:17:53,449 | INFO     | added worker_node to metadata from /home/michael/Boinc/BOINC/slots/0/workernode_map.json
[2026-01-22 07:18:26] 2026-01-21 20:17:53,449 | INFO     | this job has now completed (state=finished)
[2026-01-22 07:18:26] 2026-01-21 20:17:53,449 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-22 07:18:26] 2026-01-21 20:17:53,449 | INFO     | log transfer has been attempted: DONE
[2026-01-22 07:18:26] 2026-01-21 20:17:53,449 | INFO     | job 6976882055 has finished - writing final server update
[2026-01-22 07:18:26] 2026-01-21 20:17:53,449 | INFO     | total number of processed events: 400 (read)
[2026-01-22 07:18:26] 2026-01-21 20:17:53,453 | INFO     | using path: /home/michael/Boinc/BOINC/slots/0/PanDA_Pilot-6976882055/memory_monitor_summary.json (trf name=prmon)
[2026-01-22 07:18:26] 2026-01-21 20:17:53,453 | INFO     | extracted standard info from prmon json
[2026-01-22 07:18:26] 2026-01-21 20:17:53,453 | INFO     | extracted standard memory fields from prmon json
[2026-01-22 07:18:26] 2026-01-21 20:17:53,453 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-22 07:18:26] 2026-01-21 20:17:53,453 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-22 07:18:26] 2026-01-21 20:17:53,453 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-22 07:18:26] 2026-01-21 20:17:53,454 | INFO     | fitting pss+swap vs Time
[2026-01-22 07:18:26] 2026-01-21 20:17:53,455 | INFO     | sum of square deviations: 197203697.5
[2026-01-22 07:18:26] 2026-01-21 20:17:53,455 | INFO     | sum of deviations: 1612491659.5
[2026-01-22 07:18:26] 2026-01-21 20:17:53,455 | INFO     | mean x: 1769023942.5
[2026-01-22 07:18:26] 2026-01-21 20:17:53,455 | INFO     | mean y: 2434052.197674419
[2026-01-22 07:18:26] 2026-01-21 20:17:53,455 | INFO     | intersect: -14462489216.987263
[2026-01-22 07:18:26] 2026-01-21 20:17:53,455 | INFO     | chi2: 0.001848216686072009
[2026-01-22 07:18:26] 2026-01-21 20:17:53,455 | INFO     | current memory leak: 8.18 B/s (using 86 data points, chi2=0.00)
[2026-01-22 07:18:26] 2026-01-21 20:17:53,455 | INFO     | could have reported an average CPU frequency of 4246 MHz (7 samples)
[2026-01-22 07:18:26] 2026-01-21 20:17:53,456 | INFO     | ..............................
[2026-01-22 07:18:26] 2026-01-21 20:17:53,456 | INFO     | . Timing measurements:
[2026-01-22 07:18:26] 2026-01-21 20:17:53,456 | INFO     | . get job = 0 s
[2026-01-22 07:18:26] 2026-01-21 20:17:53,456 | INFO     | . initial setup = 7 s
[2026-01-22 07:18:26] 2026-01-21 20:17:53,456 | INFO     | . payload setup = 3 s
[2026-01-22 07:18:26] 2026-01-21 20:17:53,456 | INFO     | . stage-in = 0 s
[2026-01-22 07:18:26] 2026-01-21 20:17:53,456 | INFO     | . payload execution = 5622 s
[2026-01-22 07:18:26] 2026-01-21 20:17:53,456 | INFO     | . stage-out = 0 s
[2026-01-22 07:18:26] 2026-01-21 20:17:53,456 | INFO     | . log creation = 0 s
[2026-01-22 07:18:26] 2026-01-21 20:17:53,456 | INFO     | ..............................
[2026-01-22 07:18:26] 2026-01-21 20:17:53,574 | INFO     | 
[2026-01-22 07:18:26] 2026-01-21 20:17:53,575 | INFO     | job summary report
[2026-01-22 07:18:26] 2026-01-21 20:17:53,575 | INFO     | --------------------------------------------------
[2026-01-22 07:18:26] 2026-01-21 20:17:53,575 | INFO     | PanDA job id: 6976882055
[2026-01-22 07:18:26] 2026-01-21 20:17:53,575 | INFO     | task id: 48299637
[2026-01-22 07:18:26] 2026-01-21 20:17:53,575 | INFO     | errors: (none)
[2026-01-22 07:18:26] 2026-01-21 20:17:53,575 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-22 07:18:26] 2026-01-21 20:17:53,575 | INFO     | pilot state: finished 
[2026-01-22 07:18:26] 2026-01-21 20:17:53,575 | INFO     | transexitcode: 0
[2026-01-22 07:18:26] 2026-01-21 20:17:53,575 | INFO     | exeerrorcode: 0
[2026-01-22 07:18:26] 2026-01-21 20:17:53,575 | INFO     | exeerrordiag: 
[2026-01-22 07:18:26] 2026-01-21 20:17:53,575 | INFO     | exitcode: 0
[2026-01-22 07:18:26] 2026-01-21 20:17:53,575 | INFO     | exitmsg: OK
[2026-01-22 07:18:26] 2026-01-21 20:17:53,575 | INFO     | cpuconsumptiontime: 21309 s
[2026-01-22 07:18:26] 2026-01-21 20:17:53,575 | INFO     | nevents: 400
[2026-01-22 07:18:26] 2026-01-21 20:17:53,575 | INFO     | neventsw: 0
[2026-01-22 07:18:26] 2026-01-21 20:17:53,575 | INFO     | pid: 1909338
[2026-01-22 07:18:26] 2026-01-21 20:17:53,575 | INFO     | pgrp: 1909338
[2026-01-22 07:18:26] 2026-01-21 20:17:53,575 | INFO     | corecount: 4
[2026-01-22 07:18:26] 2026-01-21 20:17:53,575 | INFO     | event service: False
[2026-01-22 07:18:26] 2026-01-21 20:17:53,576 | INFO     | sizes: {0: 2284393, 11: 2284393, 5629: 2311154, 5631: 2320174, 5633: 2320230, 5634: 2320424}
[2026-01-22 07:18:26] 2026-01-21 20:17:53,576 | INFO     | --------------------------------------------------
[2026-01-22 07:18:26] 2026-01-21 20:17:53,576 | INFO     | 
[2026-01-22 07:18:26] 2026-01-21 20:17:53,576 | INFO     | executing command: ls -lF /home/michael/Boinc/BOINC/slots/0
[2026-01-22 07:18:26] 2026-01-21 20:17:53,600 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-22 07:18:26] 2026-01-21 20:17:53,601 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-22 07:18:26] 2026-01-21 20:17:53,601 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-22 07:18:26] 2026-01-21 20:17:53,601 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-22 07:18:26] 2026-01-21 20:17:53,601 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-22 07:18:26] 2026-01-21 20:17:53,601 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-22 07:18:26] 2026-01-21 20:17:53,601 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-22 07:18:26] 2026-01-21 20:17:53,601 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-22 07:18:26] 2026-01-21 20:17:53,601 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-22 07:18:26] 2026-01-21 20:17:53,601 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-22 07:18:26] 2026-01-21 20:17:53,601 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-22 07:18:26] 2026-01-21 20:17:53,601 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-22 07:18:26] 2026-01-21 20:17:53,601 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-22 07:18:26] 2026-01-21 20:17:53,601 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-22 07:18:26] 2026-01-21 20:17:53,601 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-22 07:18:26] 2026-01-21 20:17:53,602 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-22 07:18:26] 2026-01-21 20:17:53,602 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-22 07:18:26] 2026-01-21 20:17:53,602 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-22 07:18:26] 2026-01-21 20:17:53,602 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-22 07:18:26] 2026-01-21 20:17:53,602 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-22 07:18:26] 2026-01-21 20:17:53,602 | INFO     | job 6976882055 has completed (purged errors)
[2026-01-22 07:18:26] 2026-01-21 20:17:53,602 | INFO     | overall cleanup function is called
[2026-01-22 07:18:26] 2026-01-21 20:17:54,609 | INFO     | --- collectZombieJob: --- 10, [1909338]
[2026-01-22 07:18:26] 2026-01-21 20:17:54,609 | INFO     | zombie collector waiting for pid 1909338
[2026-01-22 07:18:26] 2026-01-21 20:17:54,609 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-22 07:18:26] 2026-01-21 20:17:54,609 | INFO     | collected zombie processes
[2026-01-22 07:18:26] 2026-01-21 20:17:54,609 | INFO     | will attempt to kill all subprocesses of pid=1909338
[2026-01-22 07:18:26] 2026-01-21 20:17:54,762 | INFO     | process IDs to be killed: [1909338] (in reverse order)
[2026-01-22 07:18:26] 2026-01-21 20:17:54,820 | WARNING  | found no corresponding commands to process id(s)
[2026-01-22 07:18:26] 2026-01-21 20:17:54,820 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-22 07:18:26] 2026-01-21 20:17:54,824 | INFO     | did not find any defunct processes belonging to 1909338
[2026-01-22 07:18:26] 2026-01-21 20:17:54,828 | INFO     | did not find any defunct processes belonging to 1909338
[2026-01-22 07:18:26] 2026-01-21 20:17:54,828 | INFO     | ready for new job
[2026-01-22 07:18:26] 2026-01-21 20:17:54,828 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-22 07:18:26] 2026-01-21 20:17:54,829 | INFO     | **************************************
[2026-01-22 07:18:26] 2026-01-21 20:17:54,829 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-22 07:18:26] 2026-01-21 20:17:54,829 | INFO     | **************************************
[2026-01-22 07:18:26] 2026-01-21 20:17:54,829 | INFO     | 
[2026-01-22 07:18:26] 2026-01-21 20:17:54,830 | INFO     | architecture information:
[2026-01-22 07:18:26] 2026-01-21 20:17:54,831 | INFO     | executing command: cat /etc/os-release
[2026-01-22 07:18:26] 2026-01-21 20:17:54,845 | INFO     | cat /etc/os-release:
[2026-01-22 07:18:26] NAME="CentOS Linux"
[2026-01-22 07:18:26] VERSION="7 (Core)"
[2026-01-22 07:18:26] ID="centos"
[2026-01-22 07:18:26] ID_LIKE="rhel fedora"
[2026-01-22 07:18:26] VERSION_ID="7"
[2026-01-22 07:18:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-22 07:18:26] ANSI_COLOR="0;31"
[2026-01-22 07:18:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-22 07:18:26] HOME_URL="https://www.centos.org/"
[2026-01-22 07:18:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-22 07:18:26] 
[2026-01-22 07:18:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-22 07:18:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-22 07:18:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-22 07:18:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-22 07:18:26] 
[2026-01-22 07:18:26] 2026-01-21 20:17:54,845 | INFO     | **************************************
[2026-01-22 07:18:26] 2026-01-21 20:17:55,348 | INFO     | executing command: df -mP /home/michael/Boinc/BOINC/slots/0
[2026-01-22 07:18:26] 2026-01-21 20:17:55,363 | INFO     | sufficient remaining disk space (202192715776 B)
[2026-01-22 07:18:26] 2026-01-21 20:17:55,363 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-22 07:18:26] 2026-01-21 20:17:55,363 | INFO     | current server update state: UPDATING_FINAL
[2026-01-22 07:18:26] 2026-01-21 20:17:55,363 | INFO     | update_server=False
[2026-01-22 07:18:26] 2026-01-21 20:17:55,363 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-22 07:18:26] 2026-01-21 20:17:55,363 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-22 07:18:26] 2026-01-21 20:17:55,372 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-22 07:18:26] 2026-01-21 20:17:55,424 | INFO     | all data control threads have been joined
[2026-01-22 07:18:26] 2026-01-21 20:17:55,890 | INFO     | all payload control threads have been joined
[2026-01-22 07:18:26] 2026-01-21 20:17:56,041 | INFO     | all job control threads have been joined
[2026-01-22 07:18:26] 2026-01-21 20:17:56,166 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-22 07:18:26] 2026-01-21 20:17:56,166 | INFO     | aborting loop
[2026-01-22 07:18:26] 2026-01-21 20:17:56,367 | INFO     | [job] queue monitor thread has finished
[2026-01-22 07:18:26] 2026-01-21 20:17:56,368 | INFO     | [job] retrieve thread has finished
[2026-01-22 07:18:26] 2026-01-21 20:17:56,375 | INFO     | [data] copytool_in thread has finished
[2026-01-22 07:18:26] 2026-01-21 20:17:56,429 | INFO     | [data] control thread has finished
[2026-01-22 07:18:26] 2026-01-21 20:17:56,561 | INFO     | [payload] execute_payloads thread has finished
[2026-01-22 07:18:26] 2026-01-21 20:17:56,607 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-22 07:18:26] 2026-01-21 20:17:56,621 | INFO     | [monitor] cgroup control has ended
[2026-01-22 07:18:26] 2026-01-21 20:17:56,895 | INFO     | [payload] control thread has finished
[2026-01-22 07:18:26] 2026-01-21 20:17:57,046 | INFO     | [job] control thread has finished
[2026-01-22 07:18:26] 2026-01-21 20:17:57,101 | INFO     | [payload] validate_post thread has finished
[2026-01-22 07:18:26] 2026-01-21 20:17:57,171 | INFO     | [job] job monitor thread has finished
[2026-01-22 07:18:26] 2026-01-21 20:17:57,377 | INFO     | [data] copytool_out thread has finished
[2026-01-22 07:18:26] 2026-01-21 20:17:57,445 | INFO     | [payload] failed_post thread has finished
[2026-01-22 07:18:26] 2026-01-21 20:17:57,604 | INFO     | [job] validate thread has finished
[2026-01-22 07:18:26] 2026-01-21 20:17:57,666 | INFO     | [payload] validate_pre thread has finished
[2026-01-22 07:18:26] 2026-01-21 20:17:57,712 | INFO     | [job] create_data_payload thread has finished
[2026-01-22 07:18:26] 2026-01-21 20:17:58,053 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-22 07:18:26] 2026-01-21 20:18:02,059 | INFO     | [data] queue_monitor thread has finished
[2026-01-22 07:18:26] 2026-01-21 20:18:03,040 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 132625597896512)>', '<ExcThread(monitor, started 132624823609088)>']
[2026-01-22 07:18:26] 2026-01-21 20:18:08,064 | INFO     | all workflow threads have been joined
[2026-01-22 07:18:26] 2026-01-21 20:18:08,064 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-22 07:18:26] 2026-01-21 20:18:08,064 | INFO     | traces error code: 0
[2026-01-22 07:18:26] 2026-01-21 20:18:08,065 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-22 07:18:26] 2026-01-21 20:18:26,121 | INFO     | PID=1904816 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-22 07:18:26] 2026-01-21 20:18:26,121 | INFO     | .. there are 4 such processes running
[2026-01-22 07:18:26] 2026-01-21 20:18:26,121 | INFO     | found 0 job(s) in 20 queues
[2026-01-22 07:18:26] 2026-01-21 20:18:26,122 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-22 07:18:26] 2026-01-21 20:18:26,122 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-22 07:18:26] 2026-01-21 20:18:26,122 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-22 07:18:26] 2026-01-21 20:18:26,122 | INFO     | [monitor] control thread has ended
[2026-01-22 07:18:26] 2026-01-21 20:18:26,204 [wrapper] ==== pilot stdout END ====
[2026-01-22 07:18:26] 2026-01-21 20:18:26,206 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-22 07:18:26] 2026-01-21 20:18:26,208 [wrapper] pilotpid: 1904816
[2026-01-22 07:18:26] 2026-01-21 20:18:26,210 [wrapper] Pilot exit status: 0
[2026-01-22 07:18:26] 2026-01-21 20:18:26,218 [wrapper] pandaids: 6976882055
[2026-01-22 07:18:26] 2026-01-21 20:18:26,246 [wrapper] cleanup supervisor_pilot 1947211 1904817
[2026-01-22 07:18:26] 2026-01-21 20:18:26,249 [wrapper] Test setup, not cleaning
[2026-01-22 07:18:26] 2026-01-21 20:18:26,251 [wrapper] apfmon messages muted
[2026-01-22 07:18:26] 2026-01-21 20:18:26,253 [wrapper] ==== wrapper stdout END ====
[2026-01-22 07:18:26] 2026-01-21 20:18:26,255 [wrapper] ==== wrapper stderr END ====
[2026-01-22 07:18:26]  *** Error codes and diagnostics ***
[2026-01-22 07:18:26]     "exeErrorCode": 0,
[2026-01-22 07:18:26]     "exeErrorDiag": "",
[2026-01-22 07:18:26]     "pilotErrorCode": 0,
[2026-01-22 07:18:26]     "pilotErrorDiag": "",
[2026-01-22 07:18:26]  *** Listing of results directory ***
[2026-01-22 07:18:26] total 426328
[2026-01-22 07:18:26] -rw-r--r-- 1 michael michael    584422 Jan 21 07:27 pilot3.tar.gz
[2026-01-22 07:18:26] -rw-r--r-- 1 michael michael      5111 Jan 21 07:27 queuedata.json
[2026-01-22 07:18:26] -rwx------ 1 michael michael     36322 Jan 21 07:27 runpilot2-wrapper.sh
[2026-01-22 07:18:26] -rw-rw-r-- 1 michael michael       100 Jan 22 05:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-22 07:18:26] -rwxr-xr-x 1 michael michael      7986 Jan 22 05:43 run_atlas
[2026-01-22 07:18:26] -rw-rw-r-- 1 michael michael       105 Jan 22 05:43 job.xml
[2026-01-22 07:18:26] -rw-r--r-- 2 michael michael 259928997 Jan 22 05:43 EVNT.48299635._000012.pool.root.1
[2026-01-22 07:18:26] -rw-rw-r-- 1 michael michael      9823 Jan 22 05:43 init_data.xml
[2026-01-22 07:18:26] drwxrwx--x 2 michael michael      4096 Jan 22 05:43 shared
[2026-01-22 07:18:26] -rw-r--r-- 2 michael michael    597774 Jan 22 05:43 input.tar.gz
[2026-01-22 07:18:26] -rw-r--r-- 2 michael michael     15845 Jan 22 05:43 start_atlas.sh
[2026-01-22 07:18:26] -rw-rw-r-- 1 michael michael         0 Jan 22 05:43 boinc_lockfile
[2026-01-22 07:18:26] -rw-rw-r-- 1 michael michael      2627 Jan 22 05:43 pandaJob.out
[2026-01-22 07:18:26] -rw------- 1 michael michael        50 Jan 22 05:43 setup.sh.local
[2026-01-22 07:18:26] -rw------- 1 michael michael   1002771 Jan 22 05:43 agis_schedconf.cvmfs.json
[2026-01-22 07:18:26] -rw------- 1 michael michael   1516246 Jan 22 05:43 agis_ddmendpoints.agis.ALL.json
[2026-01-22 07:18:26] -rw------- 1 michael michael       417 Jan 22 05:43 workernode_map.json
[2026-01-22 07:18:26] drwx------ 5 michael michael      4096 Jan 22 05:43 pilot3
[2026-01-22 07:18:26] -rw------- 1 michael michael 170412627 Jan 22 07:17 HITS.48299637._000299.pool.root.1
[2026-01-22 07:18:26] -rw------- 1 michael michael        95 Jan 22 07:17 pilot_heartbeat.json
[2026-01-22 07:18:26] -rw------- 1 michael michael      1037 Jan 22 07:17 memory_monitor_summary.json
[2026-01-22 07:18:26] -rw------- 1 michael michael    294355 Jan 22 07:17 log.48299637._000299.job.log.tgz.1
[2026-01-22 07:18:26] -rw------- 1 michael michael      6258 Jan 22 07:17 heartbeat.json
[2026-01-22 07:18:26] -rw-rw-r-- 1 michael michael       529 Jan 22 07:17 boinc_task_state.xml
[2026-01-22 07:18:26] -rw-rw-r-- 1 michael michael      8192 Jan 22 07:18 boinc_mmap_file
[2026-01-22 07:18:26] -rw-rw-r-- 1 michael michael        27 Jan 22 07:18 wrapper_checkpoint.txt
[2026-01-22 07:18:26] -rw------- 1 michael michael       822 Jan 22 07:18 pilotlog.txt
[2026-01-22 07:18:26] -rw------- 1 michael michael    842214 Jan 22 07:18 log.48299637._000299.job.log.1
[2026-01-22 07:18:26] -rw------- 1 michael michael       357 Jan 22 07:18 output.list
[2026-01-22 07:18:26] -rw-rw-r-- 1 michael michael       620 Jan 22 07:18 runtime_log
[2026-01-22 07:18:26] -rw------- 1 michael michael   1157120 Jan 22 07:18 result.tar.gz
[2026-01-22 07:18:26] -rw-rw-r-- 1 michael michael      9444 Jan 22 07:18 runtime_log.err
[2026-01-22 07:18:26] -rw------- 1 michael michael       639 Jan 22 07:18 5zNMDmXVX28nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmjwKDmPqJKdn.diag
[2026-01-22 07:18:26] -rw-rw-r-- 1 michael michael     21324 Jan 22 07:18 stderr.txt
[2026-01-22 07:18:26] HITS file was successfully produced:
[2026-01-22 07:18:26] -rw------- 1 michael michael 170412627 Jan 22 07:17 shared/HITS.pool.root.1
[2026-01-22 07:18:26]  *** Contents of shared directory: ***
[2026-01-22 07:18:26] total 422000
[2026-01-22 07:18:26] -rw-r--r-- 2 michael michael 259928997 Jan 22 05:43 ATLAS.root_0
[2026-01-22 07:18:26] -rw-r--r-- 2 michael michael    597774 Jan 22 05:43 input.tar.gz
[2026-01-22 07:18:26] -rw-r--r-- 2 michael michael     15845 Jan 22 05:43 start_atlas.sh
[2026-01-22 07:18:26] -rw------- 1 michael michael 170412627 Jan 22 07:17 HITS.pool.root.1
[2026-01-22 07:18:26] -rw------- 1 michael michael   1157120 Jan 22 07:18 result.tar.gz
07:18:27 (1901000): run_atlas exited; CPU time 21371.219635
07:18:27 (1901000): called boinc_finish(0)

</stderr_txt>
]]>

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