Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:04:53 (4115042): wrapper (7.7.26015): starting
08:04:53 (4115042): wrapper: running run_atlas (--nthreads 3)
[2026-01-21 08:04:53] Arguments: --nthreads 3
[2026-01-21 08:04:53] Threads: 3
[2026-01-21 08:04:53] Checking for CVMFS
[2026-01-21 08:04:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-21 08:04:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-21 08:04:53] Running cvmfs_config stat atlas.cern.ch
[2026-01-21 08:04:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-21 08:04:53] 2.9.2.0 4031871 460 61708 155374 0 50 24101372 36864000 0 130560 0 238871 99.979 17452 10406 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-21 08:04:53] CVMFS is ok
[2026-01-21 08:04:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-21 08:04:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-21 08:04:53] Further information can be found at the LHC@home message board.
[2026-01-21 08:04:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-21 08:04:53] Checking for apptainer binary...
[2026-01-21 08:04:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-21 08:04:53] Running /usr/bin/apptainer --version
[2026-01-21 08:04:53] apptainer version 1.4.1-1.1
[2026-01-21 08:04:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-21 08:04:53] magicA161a
[2026-01-21 08:04:53] apptainer works
[2026-01-21 08:04:53] Set ATHENA_PROC_NUMBER=3
[2026-01-21 08:04:53] Set ATHENA_CORE_NUMBER=3
[2026-01-21 08:04:53] Starting ATLAS job with PandaID=6976866905
[2026-01-21 08:04:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-21 09:21:19]  *** The last 200 lines of the pilot log: ***
[2026-01-21 09:21:19] 2026-01-21 08:20:47,588 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-21 09:21:19] 2026-01-21 08:20:47,588 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-21 09:21:19] 2026-01-21 08:20:47,588 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-21 09:21:19] 2026-01-21 08:20:47,588 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-21 09:21:19] 2026-01-21 08:20:47,588 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-21 09:21:19] 2026-01-21 08:20:47,588 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-21 09:21:19] 2026-01-21 08:20:47,588 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-21 09:21:19] 2026-01-21 08:20:47,588 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-21 09:21:19] 2026-01-21 08:20:47,588 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-21 09:21:19] 2026-01-21 08:20:47,588 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-21 09:21:19] 2026-01-21 08:20:47,588 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-21 09:21:19] 2026-01-21 08:20:47,588 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-21 09:21:19] 2026-01-21 08:20:47,588 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-21 09:21:19] 2026-01-21 08:20:47,588 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-21 09:21:19] 2026-01-21 08:20:47,588 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-21 09:21:19] 2026-01-21 08:20:47,588 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-21 09:21:19] 2026-01-21 08:20:47,588 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-21 09:21:19] 2026-01-21 08:20:47,588 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-21 09:21:19] 2026-01-21 08:20:47,588 | INFO     | job 6976866905 has completed (purged errors)
[2026-01-21 09:21:19] 2026-01-21 08:20:47,589 | INFO     | overall cleanup function is called
[2026-01-21 09:21:19] 2026-01-21 08:20:48,595 | INFO     | --- collectZombieJob: --- 10, [4123493]
[2026-01-21 09:21:19] 2026-01-21 08:20:48,595 | INFO     | zombie collector waiting for pid 4123493
[2026-01-21 09:21:19] 2026-01-21 08:20:48,595 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-21 09:21:19] 2026-01-21 08:20:48,595 | INFO     | collected zombie processes
[2026-01-21 09:21:19] 2026-01-21 08:20:48,595 | INFO     | will attempt to kill all subprocesses of pid=4123493
[2026-01-21 09:21:19] 2026-01-21 08:20:48,636 | INFO     | process IDs to be killed: [4123493] (in reverse order)
[2026-01-21 09:21:19] 2026-01-21 08:20:48,660 | WARNING  | found no corresponding commands to process id(s)
[2026-01-21 09:21:19] 2026-01-21 08:20:48,660 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-21 09:21:19] 2026-01-21 08:20:48,662 | INFO     | did not find any defunct processes belonging to 4123493
[2026-01-21 09:21:19] 2026-01-21 08:20:48,663 | INFO     | did not find any defunct processes belonging to 4123493
[2026-01-21 09:21:19] 2026-01-21 08:20:48,663 | INFO     | ready for new job
[2026-01-21 09:21:19] 2026-01-21 08:20:48,663 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-21 09:21:19] 2026-01-21 08:20:48,664 | INFO     | **************************************
[2026-01-21 09:21:19] 2026-01-21 08:20:48,664 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-21 09:21:19] 2026-01-21 08:20:48,664 | INFO     | **************************************
[2026-01-21 09:21:19] 2026-01-21 08:20:48,664 | INFO     | 
[2026-01-21 09:21:19] 2026-01-21 08:20:48,664 | INFO     | architecture information:
[2026-01-21 09:21:19] 2026-01-21 08:20:48,664 | INFO     | executing command: cat /etc/os-release
[2026-01-21 09:21:19] 2026-01-21 08:20:48,672 | INFO     | cat /etc/os-release:
[2026-01-21 09:21:19] NAME="CentOS Linux"
[2026-01-21 09:21:19] VERSION="7 (Core)"
[2026-01-21 09:21:19] ID="centos"
[2026-01-21 09:21:19] ID_LIKE="rhel fedora"
[2026-01-21 09:21:19] VERSION_ID="7"
[2026-01-21 09:21:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-21 09:21:19] ANSI_COLOR="0;31"
[2026-01-21 09:21:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-21 09:21:19] HOME_URL="https://www.centos.org/"
[2026-01-21 09:21:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-21 09:21:19] 
[2026-01-21 09:21:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-21 09:21:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-21 09:21:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-21 09:21:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-21 09:21:19] 
[2026-01-21 09:21:19] 2026-01-21 08:20:48,673 | INFO     | **************************************
[2026-01-21 09:21:19] 2026-01-21 08:20:49,176 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-21 09:21:19] 2026-01-21 08:20:49,188 | INFO     | sufficient remaining disk space (381387014144 B)
[2026-01-21 09:21:19] 2026-01-21 08:20:49,188 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-21 09:21:19] 2026-01-21 08:20:49,189 | INFO     | current server update state: UPDATING_FINAL
[2026-01-21 09:21:19] 2026-01-21 08:20:49,189 | INFO     | update_server=False
[2026-01-21 09:21:19] 2026-01-21 08:20:49,189 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-21 09:21:19] 2026-01-21 08:20:49,189 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-21 09:21:19] 2026-01-21 08:20:49,532 | INFO     | all data control threads have been joined
[2026-01-21 09:21:19] 2026-01-21 08:20:49,625 | INFO     | all job control threads have been joined
[2026-01-21 09:21:19] 2026-01-21 08:20:49,887 | INFO     | all payload control threads have been joined
[2026-01-21 09:21:19] 2026-01-21 08:20:50,084 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-21 09:21:19] 2026-01-21 08:20:50,085 | INFO     | aborting loop
[2026-01-21 09:21:19] 2026-01-21 08:20:50,150 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-21 09:21:19] 2026-01-21 08:20:50,194 | INFO     | [job] retrieve thread has finished
[2026-01-21 09:21:19] 2026-01-21 08:20:50,194 | INFO     | [job] queue monitor thread has finished
[2026-01-21 09:21:19] 2026-01-21 08:20:50,313 | INFO     | [payload] failed_post thread has finished
[2026-01-21 09:21:19] 2026-01-21 08:20:50,533 | INFO     | [data] control thread has finished
[2026-01-21 09:21:19] 2026-01-21 08:20:50,631 | INFO     | [job] control thread has finished
[2026-01-21 09:21:19] 2026-01-21 08:20:50,666 | INFO     | [payload] execute_payloads thread has finished
[2026-01-21 09:21:19] 2026-01-21 08:20:50,674 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-21 09:21:19] 2026-01-21 08:20:50,888 | INFO     | [payload] control thread has finished
[2026-01-21 09:21:19] 2026-01-21 08:20:51,090 | INFO     | [job] job monitor thread has finished
[2026-01-21 09:21:19] 2026-01-21 08:20:51,095 | INFO     | [payload] validate_post thread has finished
[2026-01-21 09:21:19] 2026-01-21 08:20:51,412 | INFO     | [job] validate thread has finished
[2026-01-21 09:21:19] 2026-01-21 08:20:51,492 | INFO     | [job] create_data_payload thread has finished
[2026-01-21 09:21:19] 2026-01-21 08:20:51,529 | INFO     | [payload] validate_pre thread has finished
[2026-01-21 09:21:19] 2026-01-21 08:20:51,660 | INFO     | [data] copytool_in thread has finished
[2026-01-21 09:21:19] 2026-01-21 08:20:52,156 | INFO     | [data] copytool_out thread has finished
[2026-01-21 09:21:19] 2026-01-21 08:20:54,681 | INFO     | [data] queue_monitor thread has finished
[2026-01-21 09:21:19] 2026-01-21 08:20:59,428 | INFO     | job.realtimelogging is not enabled
[2026-01-21 09:21:19] 2026-01-21 08:21:00,433 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-21 09:21:19] 2026-01-21 08:21:09,462 | INFO     | [monitor] cgroup control has ended
[2026-01-21 09:21:19] 2026-01-21 08:21:10,430 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140543739541312)>', '<ExcThread(monitor, started 140543392732928)>']
[2026-01-21 09:21:19] 2026-01-21 08:21:15,455 | INFO     | all workflow threads have been joined
[2026-01-21 09:21:19] 2026-01-21 08:21:15,456 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-21 09:21:19] 2026-01-21 08:21:15,456 | INFO     | traces error code: 0
[2026-01-21 09:21:19] 2026-01-21 08:21:15,456 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-21 09:21:19] 2026-01-21 08:21:18,975 | INFO     | PID=4119076 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-21 09:21:19] 2026-01-21 08:21:18,975 | INFO     | found 0 job(s) in 20 queues
[2026-01-21 09:21:19] 2026-01-21 08:21:18,975 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-21 09:21:19] 2026-01-21 08:21:18,975 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-21 09:21:19] 2026-01-21 08:21:18,975 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-21 09:21:19] 2026-01-21 08:21:18,975 | INFO     | [monitor] control thread has ended
[2026-01-21 09:21:19] 2026-01-21 08:21:19,021 [wrapper] ==== pilot stdout END ====
[2026-01-21 09:21:19] 2026-01-21 08:21:19,023 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-21 09:21:19] 2026-01-21 08:21:19,026 [wrapper] pilotpid: 4119076
[2026-01-21 09:21:19] 2026-01-21 08:21:19,028 [wrapper] Pilot exit status: 0
[2026-01-21 09:21:19] 2026-01-21 08:21:19,035 [wrapper] pandaids: 6976866905
[2026-01-21 09:21:19] 2026-01-21 08:21:19,050 [wrapper] cleanup supervisor_pilot 4128589 4119077
[2026-01-21 09:21:19] 2026-01-21 08:21:19,053 [wrapper] Test setup, not cleaning
[2026-01-21 09:21:19] 2026-01-21 08:21:19,055 [wrapper] apfmon messages muted
[2026-01-21 09:21:19] 2026-01-21 08:21:19,057 [wrapper] ==== wrapper stdout END ====
[2026-01-21 09:21:19] 2026-01-21 08:21:19,059 [wrapper] ==== wrapper stderr END ====
[2026-01-21 09:21:19]  *** Error codes and diagnostics ***
[2026-01-21 09:21:19]     "exeErrorCode": 0,
[2026-01-21 09:21:19]     "exeErrorDiag": "",
[2026-01-21 09:21:19]     "pilotErrorCode": 0,
[2026-01-21 09:21:19]     "pilotErrorDiag": "",
[2026-01-21 09:21:19]  *** Listing of results directory ***
[2026-01-21 09:21:19] total 428004
[2026-01-21 09:21:19] -rw-r--r-- 1 boinc boinc    584422 Jan 20 20:56 pilot3.tar.gz
[2026-01-21 09:21:19] -rwx------ 1 boinc boinc     36322 Jan 20 21:01 runpilot2-wrapper.sh
[2026-01-21 09:21:19] -rw-r--r-- 1 boinc boinc      5111 Jan 20 21:03 queuedata.json
[2026-01-21 09:21:19] -rw-r--r-- 1 boinc boinc       100 Jan 21 08:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-21 09:21:19] -rwxr-xr-x 1 boinc boinc      7986 Jan 21 08:04 run_atlas
[2026-01-21 09:21:19] -rw-r--r-- 1 boinc boinc       105 Jan 21 08:04 job.xml
[2026-01-21 09:21:19] -rw-r--r-- 2 boinc boinc 261799115 Jan 21 08:04 EVNT.48298165._000038.pool.root.1
[2026-01-21 09:21:19] -rw-r--r-- 2 boinc boinc    597775 Jan 21 08:04 input.tar.gz
[2026-01-21 09:21:19] -rw-r--r-- 2 boinc boinc     15845 Jan 21 08:04 start_atlas.sh
[2026-01-21 09:21:19] drwxrwx--x 2 boinc boinc      4096 Jan 21 08:04 shared
[2026-01-21 09:21:19] -rw-r--r-- 1 boinc boinc         0 Jan 21 08:04 boinc_setup_complete
[2026-01-21 09:21:19] -rw-r--r-- 1 boinc boinc      6448 Jan 21 08:04 init_data.xml
[2026-01-21 09:21:19] -rw-r--r-- 1 boinc boinc         0 Jan 21 08:04 boinc_lockfile
[2026-01-21 09:21:19] -rw-r--r-- 1 boinc boinc      2596 Jan 21 08:04 pandaJob.out
[2026-01-21 09:21:19] -rw------- 1 boinc boinc   1000361 Jan 21 08:05 agis_schedconf.cvmfs.json
[2026-01-21 09:21:19] -rw------- 1 boinc boinc   1516246 Jan 21 08:05 agis_ddmendpoints.agis.ALL.json
[2026-01-21 09:21:19] -rw------- 1 boinc boinc       427 Jan 21 08:05 workernode_map.json
[2026-01-21 09:21:19] drwx------ 5 boinc boinc      4096 Jan 21 08:05 pilot3
[2026-01-21 09:21:19] -rw------- 1 boinc boinc        95 Jan 21 09:20 pilot_heartbeat.json
[2026-01-21 09:21:19] -rw-r--r-- 1 boinc boinc       529 Jan 21 09:20 boinc_task_state.xml
[2026-01-21 09:21:19] -rw------- 1 boinc boinc 170725968 Jan 21 09:20 HITS.48298168._000957.pool.root.1
[2026-01-21 09:21:19] -rw------- 1 boinc boinc      1008 Jan 21 09:20 memory_monitor_summary.json
[2026-01-21 09:21:19] -rw------- 1 boinc boinc    240414 Jan 21 09:20 log.48298168._000957.job.log.tgz.1
[2026-01-21 09:21:19] -rw------- 1 boinc boinc      6297 Jan 21 09:20 heartbeat.json
[2026-01-21 09:21:19] -rw-r--r-- 1 boinc boinc      8192 Jan 21 09:20 boinc_mmap_file
[2026-01-21 09:21:19] -rw-r--r-- 1 boinc boinc        27 Jan 21 09:20 wrapper_checkpoint.txt
[2026-01-21 09:21:19] -rw------- 1 boinc boinc       747 Jan 21 09:21 pilotlog.txt
[2026-01-21 09:21:19] -rw------- 1 boinc boinc    670078 Jan 21 09:21 log.48298168._000957.job.log.1
[2026-01-21 09:21:19] -rw------- 1 boinc boinc       357 Jan 21 09:21 output.list
[2026-01-21 09:21:19] -rw-r--r-- 1 boinc boinc       620 Jan 21 09:21 runtime_log
[2026-01-21 09:21:19] -rw------- 1 boinc boinc    931840 Jan 21 09:21 result.tar.gz
[2026-01-21 09:21:19] -rw-r--r-- 1 boinc boinc      8916 Jan 21 09:21 runtime_log.err
[2026-01-21 09:21:19] -rw------- 1 boinc boinc       661 Jan 21 09:21 39HKDm45W28n9Rq4apOajLDm4fhM0noT9bVo0NGKDmS8pKDmBLHtdm.diag
[2026-01-21 09:21:19] -rw-r--r-- 1 boinc boinc     12735 Jan 21 09:21 stderr.txt
[2026-01-21 09:21:19] HITS file was successfully produced:
[2026-01-21 09:21:19] -rw------- 1 boinc boinc 170725968 Jan 21 09:20 shared/HITS.pool.root.1
[2026-01-21 09:21:19]  *** Contents of shared directory: ***
[2026-01-21 09:21:19] total 423912
[2026-01-21 09:21:19] -rw-r--r-- 2 boinc boinc 261799115 Jan 21 08:04 ATLAS.root_0
[2026-01-21 09:21:19] -rw-r--r-- 2 boinc boinc    597775 Jan 21 08:04 input.tar.gz
[2026-01-21 09:21:19] -rw-r--r-- 2 boinc boinc     15845 Jan 21 08:04 start_atlas.sh
[2026-01-21 09:21:19] -rw------- 1 boinc boinc 170725968 Jan 21 09:20 HITS.pool.root.1
[2026-01-21 09:21:19] -rw------- 1 boinc boinc    931840 Jan 21 09:21 result.tar.gz
09:21:20 (4115042): run_atlas exited; CPU time 12914.066693
09:21:20 (4115042): called boinc_finish(0)

</stderr_txt>
]]>

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