Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:18:34 (120154): wrapper (7.7.26015): starting
04:18:34 (120154): wrapper: running run_atlas (--nthreads 4)
[2026-01-21 04:18:34] Arguments: --nthreads 4
[2026-01-21 04:18:34] Threads: 4
[2026-01-21 04:18:34] Checking for CVMFS
[2026-01-21 04:18:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-21 04:18:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-21 04:18:35] Running cvmfs_config stat atlas.cern.ch
[2026-01-21 04:18:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-21 04:18:36] 2.9.2.0 120350 0 30028 155369 3 1 30228111 36864000 0 130560 0 0 0.000 1335 19632 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-21 04:18:36] CVMFS is ok
[2026-01-21 04:18:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-21 04:18:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-21 04:18:36] Further information can be found at the LHC@home message board.
[2026-01-21 04:18:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-21 04:18:36] Checking for apptainer binary...
[2026-01-21 04:18:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-21 04:18:36] Running /usr/bin/apptainer --version
[2026-01-21 04:18:36] apptainer version 1.4.1-1.1
[2026-01-21 04:18:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-21 04:18:36] thA373a
[2026-01-21 04:18:36] apptainer works
[2026-01-21 04:18:36] Set ATHENA_PROC_NUMBER=4
[2026-01-21 04:18:36] Set ATHENA_CORE_NUMBER=4
[2026-01-21 04:18:36] Starting ATLAS job with PandaID=6976962974
[2026-01-21 04:18:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-21 04:21:59]  *** The last 200 lines of the pilot log: ***
[2026-01-21 04:21:59] 2026-01-21 03:21:28,789 | INFO     | ready for new job
[2026-01-21 04:21:59] 2026-01-21 03:21:28,789 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-21 04:21:59] 2026-01-21 03:21:28,789 | INFO     | **************************************
[2026-01-21 04:21:59] 2026-01-21 03:21:28,790 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-21 04:21:59] 2026-01-21 03:21:28,790 | INFO     | **************************************
[2026-01-21 04:21:59] 2026-01-21 03:21:28,790 | INFO     | 
[2026-01-21 04:21:59] 2026-01-21 03:21:28,790 | INFO     | architecture information:
[2026-01-21 04:21:59] 2026-01-21 03:21:28,790 | INFO     | executing command: cat /etc/os-release
[2026-01-21 04:21:59] 2026-01-21 03:21:28,805 | INFO     | cat /etc/os-release:
[2026-01-21 04:21:59] NAME="CentOS Linux"
[2026-01-21 04:21:59] VERSION="7 (Core)"
[2026-01-21 04:21:59] ID="centos"
[2026-01-21 04:21:59] ID_LIKE="rhel fedora"
[2026-01-21 04:21:59] VERSION_ID="7"
[2026-01-21 04:21:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-21 04:21:59] ANSI_COLOR="0;31"
[2026-01-21 04:21:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-21 04:21:59] HOME_URL="https://www.centos.org/"
[2026-01-21 04:21:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-21 04:21:59] 
[2026-01-21 04:21:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-21 04:21:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-21 04:21:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-21 04:21:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-21 04:21:59] 
[2026-01-21 04:21:59] 2026-01-21 03:21:28,805 | INFO     | **************************************
[2026-01-21 04:21:59] 2026-01-21 03:21:29,308 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-21 04:21:59] 2026-01-21 03:21:29,327 | INFO     | sufficient remaining disk space (331202166784 B)
[2026-01-21 04:21:59] 2026-01-21 03:21:29,328 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-21 04:21:59] 2026-01-21 03:21:29,328 | INFO     | current server update state: UPDATING_FINAL
[2026-01-21 04:21:59] 2026-01-21 03:21:29,328 | INFO     | update_server=False
[2026-01-21 04:21:59] 2026-01-21 03:21:29,328 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-21 04:21:59] 2026-01-21 03:21:29,328 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-21 04:21:59] 2026-01-21 03:21:29,328 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-21 04:21:59] 2026-01-21 03:21:29,328 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-21 04:21:59] 2026-01-21 03:21:29,328 | INFO     | aborting loop
[2026-01-21 04:21:59] 2026-01-21 03:21:29,436 | INFO     | all job control threads have been joined
[2026-01-21 04:21:59] 2026-01-21 03:21:30,077 | INFO     | all payload control threads have been joined
[2026-01-21 04:21:59] 2026-01-21 03:21:30,133 | INFO     | all data control threads have been joined
[2026-01-21 04:21:59] 2026-01-21 03:21:30,291 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-21 04:21:59] 2026-01-21 03:21:30,333 | INFO     | [job] retrieve thread has finished
[2026-01-21 04:21:59] 2026-01-21 03:21:30,334 | INFO     | [job] queue monitor thread has finished
[2026-01-21 04:21:59] 2026-01-21 03:21:30,334 | INFO     | [job] job monitor thread has finished
[2026-01-21 04:21:59] 2026-01-21 03:21:30,442 | INFO     | [job] control thread has finished
[2026-01-21 04:21:59] 2026-01-21 03:21:30,535 | INFO     | [payload] failed_post thread has finished
[2026-01-21 04:21:59] 2026-01-21 03:21:30,867 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-21 04:21:59] 2026-01-21 03:21:31,083 | INFO     | [payload] control thread has finished
[2026-01-21 04:21:59] 2026-01-21 03:21:31,093 | INFO     | [job] validate thread has finished
[2026-01-21 04:21:59] 2026-01-21 03:21:31,139 | INFO     | [data] control thread has finished
[2026-01-21 04:21:59] 2026-01-21 03:21:31,193 | INFO     | [job] create_data_payload thread has finished
[2026-01-21 04:21:59] 2026-01-21 03:21:31,273 | INFO     | [payload] validate_pre thread has finished
[2026-01-21 04:21:59] 2026-01-21 03:21:31,334 | INFO     | [data] copytool_out thread has finished
[2026-01-21 04:21:59] 2026-01-21 03:21:31,402 | INFO     | [data] copytool_in thread has finished
[2026-01-21 04:21:59] 2026-01-21 03:21:31,602 | INFO     | [payload] validate_post thread has finished
[2026-01-21 04:21:59] 2026-01-21 03:21:31,688 | INFO     | [payload] execute_payloads thread has finished
[2026-01-21 04:21:59] 2026-01-21 03:21:34,299 | INFO     | [data] queue_monitor thread has finished
[2026-01-21 04:21:59] 2026-01-21 03:21:48,830 | INFO     | [monitor] cgroup control has ended
[2026-01-21 04:21:59] 2026-01-21 03:21:50,734 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139891467913024)>', '<ExcThread(monitor, started 139890666743552)>']
[2026-01-21 04:21:59] 2026-01-21 03:21:55,759 | INFO     | all workflow threads have been joined
[2026-01-21 04:21:59] 2026-01-21 03:21:55,760 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-21 04:21:59] 2026-01-21 03:21:55,760 | INFO     | traces error code: 0
[2026-01-21 04:21:59] 2026-01-21 03:21:55,761 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-21 04:21:59] 2026-01-21 03:21:59,602 | INFO     | PID=124495 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-21 04:21:59] 2026-01-21 03:21:59,602 | INFO     | found 0 job(s) in 20 queues
[2026-01-21 04:21:59] 2026-01-21 03:21:59,602 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-21 04:21:59] 2026-01-21 03:21:59,602 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-21 04:21:59] 2026-01-21 03:21:59,602 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-21 04:21:59] 2026-01-21 03:21:59,602 | INFO     | [monitor] control thread has ended
[2026-01-21 04:21:59] 2026-01-21 03:21:59,675 [wrapper] ==== pilot stdout END ====
[2026-01-21 04:21:59] 2026-01-21 03:21:59,679 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-21 04:21:59] 2026-01-21 03:21:59,684 [wrapper] pilotpid: 124495
[2026-01-21 04:21:59] 2026-01-21 03:21:59,688 [wrapper] Pilot exit status: 0
[2026-01-21 04:21:59] 2026-01-21 03:21:59,699 [wrapper] pandaids: 6976962974
[2026-01-21 04:21:59] 2026-01-21 03:21:59,722 [wrapper] cleanup supervisor_pilot  124501 124496
[2026-01-21 04:21:59] 2026-01-21 03:21:59,726 [wrapper] Test setup, not cleaning
[2026-01-21 04:21:59] 2026-01-21 03:21:59,730 [wrapper] apfmon messages muted
[2026-01-21 04:21:59] 2026-01-21 03:21:59,734 [wrapper] ==== wrapper stdout END ====
[2026-01-21 04:21:59] 2026-01-21 03:21:59,737 [wrapper] ==== wrapper stderr END ====
[2026-01-21 04:21:59]  *** Error codes and diagnostics ***
[2026-01-21 04:21:59]     "exeErrorCode": 0,
[2026-01-21 04:21:59]     "exeErrorDiag": "",
[2026-01-21 04:21:59]     "pilotErrorCode": 1305,
[2026-01-21 04:21:59]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139)",
[2026-01-21 04:21:59]  *** Listing of results directory ***
[2026-01-21 04:21:59] total 252548
[2026-01-21 04:21:59] -rw-r--r-- 1 boinc boinc    584422 Jan 20 23:53 pilot3.tar.gz
[2026-01-21 04:21:59] -rw-r--r-- 1 boinc boinc      5111 Jan 20 23:57 queuedata.json
[2026-01-21 04:21:59] -rwx------ 1 boinc boinc     36322 Jan 20 23:57 runpilot2-wrapper.sh
[2026-01-21 04:21:59] -rw-r--r-- 1 boinc boinc       100 Jan 21 04:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-21 04:21:59] -rwxr-xr-x 1 boinc boinc      7986 Jan 21 04:18 run_atlas
[2026-01-21 04:21:59] -rw-r--r-- 1 boinc boinc       105 Jan 21 04:18 job.xml
[2026-01-21 04:21:59] -rw-r--r-- 2 boinc boinc 254486487 Jan 21 04:18 EVNT.48298299._000012.pool.root.1
[2026-01-21 04:21:59] -rw-r--r-- 2 boinc boinc    597780 Jan 21 04:18 input.tar.gz
[2026-01-21 04:21:59] -rw-r--r-- 2 boinc boinc     15845 Jan 21 04:18 start_atlas.sh
[2026-01-21 04:21:59] drwxrwx--x 2 boinc boinc      4096 Jan 21 04:18 shared
[2026-01-21 04:21:59] -rw-r--r-- 1 boinc boinc         0 Jan 21 04:18 boinc_setup_complete
[2026-01-21 04:21:59] -rw-r--r-- 1 boinc boinc      6376 Jan 21 04:18 init_data.xml
[2026-01-21 04:21:59] -rw-r--r-- 1 boinc boinc         0 Jan 21 04:18 boinc_lockfile
[2026-01-21 04:21:59] -rw-r--r-- 1 boinc boinc      2646 Jan 21 04:18 pandaJob.out
[2026-01-21 04:21:59] -rw------- 1 boinc boinc   1002345 Jan 21 04:18 agis_schedconf.cvmfs.json
[2026-01-21 04:21:59] -rw------- 1 boinc boinc   1516246 Jan 21 04:18 agis_ddmendpoints.agis.ALL.json
[2026-01-21 04:21:59] -rw------- 1 boinc boinc       428 Jan 21 04:18 workernode_map.json
[2026-01-21 04:21:59] drwx------ 5 boinc boinc      4096 Jan 21 04:18 pilot3
[2026-01-21 04:21:59] -rw------- 1 boinc boinc       966 Jan 21 04:19 memory_monitor_summary.json
[2026-01-21 04:21:59] -rw------- 1 boinc boinc     20066 Jan 21 04:19 log.48298302._000240.job.log.tgz.1
[2026-01-21 04:21:59] -rw-r--r-- 1 boinc boinc       522 Jan 21 04:19 boinc_task_state.xml
[2026-01-21 04:21:59] -rw------- 1 boinc boinc      6929 Jan 21 04:21 heartbeat.json
[2026-01-21 04:21:59] -rw-r--r-- 1 boinc boinc        22 Jan 21 04:21 wrapper_checkpoint.txt
[2026-01-21 04:21:59] -rw-r--r-- 1 boinc boinc      8192 Jan 21 04:21 boinc_mmap_file
[2026-01-21 04:21:59] -rw------- 1 boinc boinc       746 Jan 21 04:21 pilotlog.txt
[2026-01-21 04:21:59] -rw------- 1 boinc boinc        95 Jan 21 04:21 pilot_heartbeat.json
[2026-01-21 04:21:59] -rw------- 1 boinc boinc     82494 Jan 21 04:21 log.48298302._000240.job.log.1
[2026-01-21 04:21:59] -rw------- 1 boinc boinc       188 Jan 21 04:21 output.list
[2026-01-21 04:21:59] -rw-r--r-- 1 boinc boinc       620 Jan 21 04:21 runtime_log
[2026-01-21 04:21:59] -rw------- 1 boinc boinc    122880 Jan 21 04:21 result.tar.gz
[2026-01-21 04:21:59] -rw-r--r-- 1 boinc boinc      8748 Jan 21 04:21 runtime_log.err
[2026-01-21 04:21:59] -rw------- 1 boinc boinc       648 Jan 21 04:21 FpELDmBqZ28n9Rq4apOajLDm4fhM0noT9bVo0NGKDm2bqKDmrzZIpn.diag
[2026-01-21 04:21:59] -rw-r--r-- 1 boinc boinc      9682 Jan 21 04:21 stderr.txt
[2026-01-21 04:21:59] No HITS result produced
[2026-01-21 04:21:59]  *** Contents of shared directory: ***
[2026-01-21 04:21:59] total 249248
[2026-01-21 04:21:59] -rw-r--r-- 2 boinc boinc 254486487 Jan 21 04:18 ATLAS.root_0
[2026-01-21 04:21:59] -rw-r--r-- 2 boinc boinc    597780 Jan 21 04:18 input.tar.gz
[2026-01-21 04:21:59] -rw-r--r-- 2 boinc boinc     15845 Jan 21 04:18 start_atlas.sh
[2026-01-21 04:21:59] -rw------- 1 boinc boinc    122880 Jan 21 04:21 result.tar.gz
04:22:00 (120154): run_atlas exited; CPU time 10.599351
04:22:00 (120154): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN