Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:44:22 (839513): wrapper (7.7.26015): starting
07:44:22 (839513): wrapper: running run_atlas (--nthreads 2)
[2026-01-21 07:44:22] Arguments: --nthreads 2
[2026-01-21 07:44:22] Threads: 2
[2026-01-21 07:44:22] Checking for CVMFS
[2026-01-21 07:44:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-21 07:44:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-21 07:44:22] Running cvmfs_config stat atlas.cern.ch
[2026-01-21 07:44:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-21 07:44:22] 2.9.2.0 770802 619 55564 155374 1 50 20280989 36864000 0 130560 0 202796 99.972 23835 23954 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-21 07:44:22] CVMFS is ok
[2026-01-21 07:44:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-21 07:44:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-21 07:44:22] Further information can be found at the LHC@home message board.
[2026-01-21 07:44:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-21 07:44:22] Checking for apptainer binary...
[2026-01-21 07:44:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-21 07:44:22] Running /usr/bin/apptainer --version
[2026-01-21 07:44:23] apptainer version 1.4.1-1.1
[2026-01-21 07:44:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-21 07:44:23] thA337
[2026-01-21 07:44:23] apptainer works
[2026-01-21 07:44:23] Set ATHENA_PROC_NUMBER=2
[2026-01-21 07:44:23] Set ATHENA_CORE_NUMBER=2
[2026-01-21 07:44:23] Starting ATLAS job with PandaID=6976857296
[2026-01-21 07:44:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-21 10:14:59]  *** The last 200 lines of the pilot log: ***
[2026-01-21 10:14:59] 2026-01-21 09:14:19,046 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-21 10:14:59] 2026-01-21 09:14:19,046 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-21 10:14:59] 2026-01-21 09:14:19,046 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-21 10:14:59] 2026-01-21 09:14:19,046 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-21 10:14:59] 2026-01-21 09:14:19,047 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-21 10:14:59] 2026-01-21 09:14:19,047 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-21 10:14:59] 2026-01-21 09:14:19,047 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-21 10:14:59] 2026-01-21 09:14:19,047 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-21 10:14:59] 2026-01-21 09:14:19,047 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-21 10:14:59] 2026-01-21 09:14:19,047 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-21 10:14:59] 2026-01-21 09:14:19,047 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-21 10:14:59] 2026-01-21 09:14:19,047 | INFO     | job 6976857296 has completed (purged errors)
[2026-01-21 10:14:59] 2026-01-21 09:14:19,047 | INFO     | overall cleanup function is called
[2026-01-21 10:14:59] 2026-01-21 09:14:20,051 | INFO     | --- collectZombieJob: --- 10, [847966]
[2026-01-21 10:14:59] 2026-01-21 09:14:20,051 | INFO     | zombie collector waiting for pid 847966
[2026-01-21 10:14:59] 2026-01-21 09:14:20,051 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-21 10:14:59] 2026-01-21 09:14:20,051 | INFO     | collected zombie processes
[2026-01-21 10:14:59] 2026-01-21 09:14:20,052 | INFO     | will attempt to kill all subprocesses of pid=847966
[2026-01-21 10:14:59] 2026-01-21 09:14:20,082 | INFO     | process IDs to be killed: [847966] (in reverse order)
[2026-01-21 10:14:59] 2026-01-21 09:14:20,103 | WARNING  | found no corresponding commands to process id(s)
[2026-01-21 10:14:59] 2026-01-21 09:14:20,103 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-21 10:14:59] 2026-01-21 09:14:20,107 | INFO     | did not find any defunct processes belonging to 847966
[2026-01-21 10:14:59] 2026-01-21 09:14:20,108 | INFO     | did not find any defunct processes belonging to 847966
[2026-01-21 10:14:59] 2026-01-21 09:14:20,108 | INFO     | ready for new job
[2026-01-21 10:14:59] 2026-01-21 09:14:20,108 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-21 10:14:59] 2026-01-21 09:14:20,108 | INFO     | **************************************
[2026-01-21 10:14:59] 2026-01-21 09:14:20,108 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-21 10:14:59] 2026-01-21 09:14:20,108 | INFO     | **************************************
[2026-01-21 10:14:59] 2026-01-21 09:14:20,108 | INFO     | 
[2026-01-21 10:14:59] 2026-01-21 09:14:20,109 | INFO     | architecture information:
[2026-01-21 10:14:59] 2026-01-21 09:14:20,109 | INFO     | executing command: cat /etc/os-release
[2026-01-21 10:14:59] 2026-01-21 09:14:20,117 | INFO     | cat /etc/os-release:
[2026-01-21 10:14:59] NAME="CentOS Linux"
[2026-01-21 10:14:59] VERSION="7 (Core)"
[2026-01-21 10:14:59] ID="centos"
[2026-01-21 10:14:59] ID_LIKE="rhel fedora"
[2026-01-21 10:14:59] VERSION_ID="7"
[2026-01-21 10:14:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-21 10:14:59] ANSI_COLOR="0;31"
[2026-01-21 10:14:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-21 10:14:59] HOME_URL="https://www.centos.org/"
[2026-01-21 10:14:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-21 10:14:59] 
[2026-01-21 10:14:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-21 10:14:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-21 10:14:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-21 10:14:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-21 10:14:59] 
[2026-01-21 10:14:59] 2026-01-21 09:14:20,117 | INFO     | **************************************
[2026-01-21 10:14:59] 2026-01-21 09:14:20,619 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-21 10:14:59] 2026-01-21 09:14:20,631 | INFO     | sufficient remaining disk space (491092180992 B)
[2026-01-21 10:14:59] 2026-01-21 09:14:20,631 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-21 10:14:59] 2026-01-21 09:14:20,631 | INFO     | current server update state: UPDATING_FINAL
[2026-01-21 10:14:59] 2026-01-21 09:14:20,631 | INFO     | update_server=False
[2026-01-21 10:14:59] 2026-01-21 09:14:20,631 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-21 10:14:59] 2026-01-21 09:14:20,631 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-21 10:14:59] 2026-01-21 09:14:20,631 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-21 10:14:59] 2026-01-21 09:14:20,631 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-21 10:14:59] 2026-01-21 09:14:20,632 | INFO     | found 0 job(s) in 20 queues
[2026-01-21 10:14:59] 2026-01-21 09:14:20,632 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-21 10:14:59] 2026-01-21 09:14:20,632 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-21 10:14:59] 2026-01-21 09:14:20,790 | INFO     | all job control threads have been joined
[2026-01-21 10:14:59] 2026-01-21 09:14:20,912 | INFO     | all data control threads have been joined
[2026-01-21 10:14:59] 2026-01-21 09:14:21,040 | INFO     | all payload control threads have been joined
[2026-01-21 10:14:59] 2026-01-21 09:14:21,268 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-21 10:14:59] 2026-01-21 09:14:21,269 | INFO     | aborting loop
[2026-01-21 10:14:59] 2026-01-21 09:14:21,637 | INFO     | [job] retrieve thread has finished
[2026-01-21 10:14:59] 2026-01-21 09:14:21,637 | INFO     | [job] queue monitor thread has finished
[2026-01-21 10:14:59] 2026-01-21 09:14:21,782 | INFO     | [payload] validate_post thread has finished
[2026-01-21 10:14:59] 2026-01-21 09:14:21,792 | INFO     | [job] control thread has finished
[2026-01-21 10:14:59] 2026-01-21 09:14:21,918 | INFO     | [data] control thread has finished
[2026-01-21 10:14:59] 2026-01-21 09:14:21,961 | INFO     | [payload] failed_post thread has finished
[2026-01-21 10:14:59] 2026-01-21 09:14:22,046 | INFO     | [payload] control thread has finished
[2026-01-21 10:14:59] 2026-01-21 09:14:22,198 | INFO     | [job] validate thread has finished
[2026-01-21 10:14:59] 2026-01-21 09:14:22,274 | INFO     | [job] job monitor thread has finished
[2026-01-21 10:14:59] 2026-01-21 09:14:22,590 | INFO     | [payload] validate_pre thread has finished
[2026-01-21 10:14:59] 2026-01-21 09:14:22,607 | INFO     | [data] copytool_in thread has finished
[2026-01-21 10:14:59] 2026-01-21 09:14:22,636 | INFO     | [data] copytool_out thread has finished
[2026-01-21 10:14:59] 2026-01-21 09:14:22,665 | INFO     | [job] create_data_payload thread has finished
[2026-01-21 10:14:59] 2026-01-21 09:14:22,857 | INFO     | [payload] execute_payloads thread has finished
[2026-01-21 10:14:59] 2026-01-21 09:14:23,158 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-21 10:14:59] 2026-01-21 09:14:27,165 | INFO     | [data] queue_monitor thread has finished
[2026-01-21 10:14:59] 2026-01-21 09:14:30,911 | INFO     | job.realtimelogging is not enabled
[2026-01-21 10:14:59] 2026-01-21 09:14:31,916 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-21 10:14:59] 2026-01-21 09:14:33,084 [wrapper] supervise_pilot (15 min periods counter: 11)
[2026-01-21 10:14:59] 2026-01-21 09:14:52,655 | INFO     | [monitor] cgroup control has ended
[2026-01-21 10:14:59] 2026-01-21 09:14:54,116 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139828003964736)>', '<ExcThread(monitor, started 139827274045184)>']
[2026-01-21 10:14:59] 2026-01-21 09:14:54,805 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-21 10:14:59] 2026-01-21 09:14:54,806 | INFO     | [monitor] control thread has ended
[2026-01-21 10:14:59] 2026-01-21 09:14:59,142 | INFO     | all workflow threads have been joined
[2026-01-21 10:14:59] 2026-01-21 09:14:59,142 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-21 10:14:59] 2026-01-21 09:14:59,142 | INFO     | traces error code: 0
[2026-01-21 10:14:59] 2026-01-21 09:14:59,142 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-21 10:14:59] 2026-01-21 09:14:59,214 [wrapper] ==== pilot stdout END ====
[2026-01-21 10:14:59] 2026-01-21 09:14:59,216 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-21 10:14:59] 2026-01-21 09:14:59,218 [wrapper] pilotpid: 843548
[2026-01-21 10:14:59] 2026-01-21 09:14:59,220 [wrapper] Pilot exit status: 0
[2026-01-21 10:14:59] 2026-01-21 09:14:59,226 [wrapper] pandaids: 6976857296
[2026-01-21 10:14:59] 2026-01-21 09:14:59,243 [wrapper] cleanup supervisor_pilot  853514 843549
[2026-01-21 10:14:59] 2026-01-21 09:14:59,246 [wrapper] Test setup, not cleaning
[2026-01-21 10:14:59] 2026-01-21 09:14:59,249 [wrapper] apfmon messages muted
[2026-01-21 10:14:59] 2026-01-21 09:14:59,253 [wrapper] ==== wrapper stdout END ====
[2026-01-21 10:14:59] 2026-01-21 09:14:59,257 [wrapper] ==== wrapper stderr END ====
[2026-01-21 10:14:59]  *** Error codes and diagnostics ***
[2026-01-21 10:14:59]     "exeErrorCode": 0,
[2026-01-21 10:14:59]     "exeErrorDiag": "",
[2026-01-21 10:14:59]     "pilotErrorCode": 0,
[2026-01-21 10:14:59]     "pilotErrorDiag": "",
[2026-01-21 10:14:59]  *** Listing of results directory ***
[2026-01-21 10:14:59] total 414356
[2026-01-21 10:14:59] -rw-r--r-- 1 boinc boinc    584422 Jan 20 20:56 pilot3.tar.gz
[2026-01-21 10:14:59] -rwx------ 1 boinc boinc     36322 Jan 20 20:59 runpilot2-wrapper.sh
[2026-01-21 10:14:59] -rw-r--r-- 1 boinc boinc      5111 Jan 20 21:00 queuedata.json
[2026-01-21 10:14:59] -rw-r--r-- 1 boinc boinc       100 Jan 21 07:44 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-21 10:14:59] -rwxr-xr-x 1 boinc boinc      7986 Jan 21 07:44 run_atlas
[2026-01-21 10:14:59] -rw-r--r-- 1 boinc boinc       105 Jan 21 07:44 job.xml
[2026-01-21 10:14:59] -rw-r--r-- 2 boinc boinc 248180291 Jan 21 07:44 EVNT.48299659._000010.pool.root.1
[2026-01-21 10:14:59] -rw-r--r-- 2 boinc boinc    597786 Jan 21 07:44 input.tar.gz
[2026-01-21 10:14:59] -rw-r--r-- 2 boinc boinc     15845 Jan 21 07:44 start_atlas.sh
[2026-01-21 10:14:59] drwxrwx--x 2 boinc boinc      4096 Jan 21 07:44 shared
[2026-01-21 10:14:59] -rw-r--r-- 1 boinc boinc         0 Jan 21 07:44 boinc_setup_complete
[2026-01-21 10:14:59] -rw-r--r-- 1 boinc boinc      6205 Jan 21 07:44 init_data.xml
[2026-01-21 10:14:59] -rw-r--r-- 1 boinc boinc         0 Jan 21 07:44 boinc_lockfile
[2026-01-21 10:14:59] -rw-r--r-- 1 boinc boinc      2619 Jan 21 07:44 pandaJob.out
[2026-01-21 10:14:59] -rw------- 1 boinc boinc   1000361 Jan 21 07:44 agis_schedconf.cvmfs.json
[2026-01-21 10:14:59] -rw------- 1 boinc boinc   1516246 Jan 21 07:44 agis_ddmendpoints.agis.ALL.json
[2026-01-21 10:14:59] -rw------- 1 boinc boinc       425 Jan 21 07:44 workernode_map.json
[2026-01-21 10:14:59] drwx------ 5 boinc boinc      4096 Jan 21 07:44 pilot3
[2026-01-21 10:14:59] -rw------- 1 boinc boinc 169044453 Jan 21 10:13 HITS.48299661._000241.pool.root.1
[2026-01-21 10:14:59] -rw-r--r-- 1 boinc boinc       529 Jan 21 10:14 boinc_task_state.xml
[2026-01-21 10:14:59] -rw------- 1 boinc boinc      1019 Jan 21 10:14 memory_monitor_summary.json
[2026-01-21 10:14:59] -rw------- 1 boinc boinc    299444 Jan 21 10:14 log.48299661._000241.job.log.tgz.1
[2026-01-21 10:14:59] -rw------- 1 boinc boinc        95 Jan 21 10:14 pilot_heartbeat.json
[2026-01-21 10:14:59] -rw------- 1 boinc boinc      6296 Jan 21 10:14 heartbeat.json
[2026-01-21 10:14:59] -rw-r--r-- 1 boinc boinc      8192 Jan 21 10:14 boinc_mmap_file
[2026-01-21 10:14:59] -rw-r--r-- 1 boinc boinc        27 Jan 21 10:14 wrapper_checkpoint.txt
[2026-01-21 10:14:59] -rw------- 1 boinc boinc      4624 Jan 21 10:14 pilotlog.txt
[2026-01-21 10:14:59] -rw------- 1 boinc boinc   1276594 Jan 21 10:14 log.48299661._000241.job.log.1
[2026-01-21 10:14:59] -rw------- 1 boinc boinc       357 Jan 21 10:14 output.list
[2026-01-21 10:14:59] -rw-r--r-- 1 boinc boinc       620 Jan 21 10:14 runtime_log
[2026-01-21 10:14:59] -rw------- 1 boinc boinc   1597440 Jan 21 10:14 result.tar.gz
[2026-01-21 10:14:59] -rw-r--r-- 1 boinc boinc      8896 Jan 21 10:14 runtime_log.err
[2026-01-21 10:14:59] -rw------- 1 boinc boinc       657 Jan 21 10:14 ZQHNDmQ4W28nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmEawKDmDgGx3n.diag
[2026-01-21 10:14:59] -rw-r--r-- 1 boinc boinc     12034 Jan 21 10:14 stderr.txt
[2026-01-21 10:14:59] HITS file was successfully produced:
[2026-01-21 10:14:59] -rw------- 1 boinc boinc 169044453 Jan 21 10:13 shared/HITS.pool.root.1
[2026-01-21 10:14:59]  *** Contents of shared directory: ***
[2026-01-21 10:14:59] total 409612
[2026-01-21 10:14:59] -rw-r--r-- 2 boinc boinc 248180291 Jan 21 07:44 ATLAS.root_0
[2026-01-21 10:14:59] -rw-r--r-- 2 boinc boinc    597786 Jan 21 07:44 input.tar.gz
[2026-01-21 10:14:59] -rw-r--r-- 2 boinc boinc     15845 Jan 21 07:44 start_atlas.sh
[2026-01-21 10:14:59] -rw------- 1 boinc boinc 169044453 Jan 21 10:13 HITS.pool.root.1
[2026-01-21 10:14:59] -rw------- 1 boinc boinc   1597440 Jan 21 10:14 result.tar.gz
10:15:01 (839513): run_atlas exited; CPU time 17556.802202
10:15:01 (839513): called boinc_finish(0)

</stderr_txt>
]]>

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