Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:12:35 (811727): wrapper (7.7.26015): starting
03:12:35 (811727): wrapper: running run_atlas (--nthreads 2)
[2026-01-21 03:12:35] Arguments: --nthreads 2
[2026-01-21 03:12:35] Threads: 2
[2026-01-21 03:12:35] Checking for CVMFS
[2026-01-21 03:12:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-21 03:12:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-21 03:12:36] Running cvmfs_config stat atlas.cern.ch
[2026-01-21 03:12:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-21 03:12:36] 2.9.2.0 770802 347 52440 155366 1 50 20242206 36864000 0 130560 0 121292 99.962 13290 21644 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-21 03:12:36] CVMFS is ok
[2026-01-21 03:12:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-21 03:12:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-21 03:12:36] Further information can be found at the LHC@home message board.
[2026-01-21 03:12:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-21 03:12:36] Checking for apptainer binary...
[2026-01-21 03:12:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-21 03:12:36] Running /usr/bin/apptainer --version
[2026-01-21 03:12:36] apptainer version 1.4.1-1.1
[2026-01-21 03:12:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-21 03:12:36] thA337
[2026-01-21 03:12:36] apptainer works
[2026-01-21 03:12:36] Set ATHENA_PROC_NUMBER=2
[2026-01-21 03:12:36] Set ATHENA_CORE_NUMBER=2
[2026-01-21 03:12:36] Starting ATLAS job with PandaID=6976782990
[2026-01-21 03:12:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-21 05:07:13]  *** The last 200 lines of the pilot log: ***
[2026-01-21 05:07:13] 2026-01-21 04:06:41,236 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-21 05:07:13] 2026-01-21 04:06:41,236 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-21 05:07:13] 2026-01-21 04:06:41,236 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-21 05:07:13] 2026-01-21 04:06:41,236 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-21 05:07:13] 2026-01-21 04:06:41,236 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-21 05:07:13] 2026-01-21 04:06:41,236 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-21 05:07:13] 2026-01-21 04:06:41,236 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-21 05:07:13] 2026-01-21 04:06:41,236 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-21 05:07:13] 2026-01-21 04:06:41,236 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-21 05:07:13] 2026-01-21 04:06:41,236 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-21 05:07:13] 2026-01-21 04:06:41,236 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-21 05:07:13] 2026-01-21 04:06:41,236 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-21 05:07:13] 2026-01-21 04:06:41,236 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-21 05:07:13] 2026-01-21 04:06:41,236 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-21 05:07:13] 2026-01-21 04:06:41,236 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-21 05:07:13] 2026-01-21 04:06:41,236 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-21 05:07:13] 2026-01-21 04:06:41,236 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-21 05:07:13] 2026-01-21 04:06:41,236 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-21 05:07:13] 2026-01-21 04:06:41,236 | INFO     | job 6976782990 has completed (purged errors)
[2026-01-21 05:07:13] 2026-01-21 04:06:41,236 | INFO     | overall cleanup function is called
[2026-01-21 05:07:13] 2026-01-21 04:06:42,243 | INFO     | --- collectZombieJob: --- 10, [820155]
[2026-01-21 05:07:13] 2026-01-21 04:06:42,243 | INFO     | zombie collector waiting for pid 820155
[2026-01-21 05:07:13] 2026-01-21 04:06:42,243 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-21 05:07:13] 2026-01-21 04:06:42,243 | INFO     | collected zombie processes
[2026-01-21 05:07:13] 2026-01-21 04:06:42,244 | INFO     | will attempt to kill all subprocesses of pid=820155
[2026-01-21 05:07:13] 2026-01-21 04:06:42,275 | INFO     | process IDs to be killed: [820155] (in reverse order)
[2026-01-21 05:07:13] 2026-01-21 04:06:42,295 | WARNING  | found no corresponding commands to process id(s)
[2026-01-21 05:07:13] 2026-01-21 04:06:42,295 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-21 05:07:13] 2026-01-21 04:06:42,296 | INFO     | did not find any defunct processes belonging to 820155
[2026-01-21 05:07:13] 2026-01-21 04:06:42,297 | INFO     | did not find any defunct processes belonging to 820155
[2026-01-21 05:07:13] 2026-01-21 04:06:42,297 | INFO     | ready for new job
[2026-01-21 05:07:13] 2026-01-21 04:06:42,297 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-21 05:07:13] 2026-01-21 04:06:42,297 | INFO     | **************************************
[2026-01-21 05:07:13] 2026-01-21 04:06:42,297 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-21 05:07:13] 2026-01-21 04:06:42,298 | INFO     | **************************************
[2026-01-21 05:07:13] 2026-01-21 04:06:42,298 | INFO     | 
[2026-01-21 05:07:13] 2026-01-21 04:06:42,298 | INFO     | architecture information:
[2026-01-21 05:07:13] 2026-01-21 04:06:42,298 | INFO     | executing command: cat /etc/os-release
[2026-01-21 05:07:13] 2026-01-21 04:06:42,305 | INFO     | cat /etc/os-release:
[2026-01-21 05:07:13] NAME="CentOS Linux"
[2026-01-21 05:07:13] VERSION="7 (Core)"
[2026-01-21 05:07:13] ID="centos"
[2026-01-21 05:07:13] ID_LIKE="rhel fedora"
[2026-01-21 05:07:13] VERSION_ID="7"
[2026-01-21 05:07:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-21 05:07:13] ANSI_COLOR="0;31"
[2026-01-21 05:07:13] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-21 05:07:13] HOME_URL="https://www.centos.org/"
[2026-01-21 05:07:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-21 05:07:13] 
[2026-01-21 05:07:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-21 05:07:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-21 05:07:13] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-21 05:07:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-21 05:07:13] 
[2026-01-21 05:07:13] 2026-01-21 04:06:42,305 | INFO     | **************************************
[2026-01-21 05:07:13] 2026-01-21 04:06:42,809 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-21 05:07:13] 2026-01-21 04:06:42,821 | INFO     | sufficient remaining disk space (491615420416 B)
[2026-01-21 05:07:13] 2026-01-21 04:06:42,821 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-21 05:07:13] 2026-01-21 04:06:42,821 | INFO     | current server update state: UPDATING_FINAL
[2026-01-21 05:07:13] 2026-01-21 04:06:42,821 | INFO     | update_server=False
[2026-01-21 05:07:13] 2026-01-21 04:06:42,821 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-21 05:07:13] 2026-01-21 04:06:42,821 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-21 05:07:13] 2026-01-21 04:06:42,821 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-21 05:07:13] 2026-01-21 04:06:42,825 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-21 05:07:13] 2026-01-21 04:06:42,825 | INFO     | aborting loop
[2026-01-21 05:07:13] 2026-01-21 04:06:43,112 | INFO     | all payload control threads have been joined
[2026-01-21 05:07:13] 2026-01-21 04:06:43,522 | INFO     | all job control threads have been joined
[2026-01-21 05:07:13] 2026-01-21 04:06:43,613 | INFO     | all data control threads have been joined
[2026-01-21 05:07:13] 2026-01-21 04:06:43,731 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-21 05:07:13] 2026-01-21 04:06:43,827 | INFO     | [job] retrieve thread has finished
[2026-01-21 05:07:13] 2026-01-21 04:06:43,828 | INFO     | [job] queue monitor thread has finished
[2026-01-21 05:07:13] 2026-01-21 04:06:43,828 | INFO     | [job] job monitor thread has finished
[2026-01-21 05:07:13] 2026-01-21 04:06:44,118 | INFO     | [payload] control thread has finished
[2026-01-21 05:07:13] 2026-01-21 04:06:44,319 | INFO     | [payload] validate_post thread has finished
[2026-01-21 05:07:13] 2026-01-21 04:06:44,319 | INFO     | [job] validate thread has finished
[2026-01-21 05:07:13] 2026-01-21 04:06:44,346 | INFO     | [job] create_data_payload thread has finished
[2026-01-21 05:07:13] 2026-01-21 04:06:44,403 | INFO     | [payload] validate_pre thread has finished
[2026-01-21 05:07:13] 2026-01-21 04:06:44,482 | INFO     | [data] copytool_in thread has finished
[2026-01-21 05:07:13] 2026-01-21 04:06:44,527 | INFO     | [job] control thread has finished
[2026-01-21 05:07:13] 2026-01-21 04:06:44,618 | INFO     | [data] control thread has finished
[2026-01-21 05:07:13] 2026-01-21 04:06:44,758 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-21 05:07:13] 2026-01-21 04:06:45,144 | INFO     | [payload] execute_payloads thread has finished
[2026-01-21 05:07:13] 2026-01-21 04:06:45,357 | INFO     | [payload] failed_post thread has finished
[2026-01-21 05:07:13] 2026-01-21 04:06:45,737 | INFO     | [data] copytool_out thread has finished
[2026-01-21 05:07:13] 2026-01-21 04:06:46,828 | INFO     | [data] queue_monitor thread has finished
[2026-01-21 05:07:13] 2026-01-21 04:07:06,416 | INFO     | [monitor] cgroup control has ended
[2026-01-21 05:07:13] 2026-01-21 04:07:07,929 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140096157792064)>', '<ExcThread(monitor, started 140095516567296)>']
[2026-01-21 05:07:13] 2026-01-21 04:07:12,955 | INFO     | all workflow threads have been joined
[2026-01-21 05:07:13] 2026-01-21 04:07:12,955 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-21 05:07:13] 2026-01-21 04:07:12,956 | INFO     | traces error code: 0
[2026-01-21 05:07:13] 2026-01-21 04:07:12,956 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-21 05:07:13] 2026-01-21 04:07:13,000 | INFO     | PID=815750 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-21 05:07:13] 2026-01-21 04:07:13,000 | INFO     | found 0 job(s) in 20 queues
[2026-01-21 05:07:13] 2026-01-21 04:07:13,000 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-21 05:07:13] 2026-01-21 04:07:13,000 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-21 05:07:13] 2026-01-21 04:07:13,000 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-21 05:07:13] 2026-01-21 04:07:13,000 | INFO     | [monitor] control thread has ended
[2026-01-21 05:07:13] 2026-01-21 04:07:13,040 [wrapper] ==== pilot stdout END ====
[2026-01-21 05:07:13] 2026-01-21 04:07:13,042 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-21 05:07:13] 2026-01-21 04:07:13,044 [wrapper] pilotpid: 815750
[2026-01-21 05:07:13] 2026-01-21 04:07:13,046 [wrapper] Pilot exit status: 0
[2026-01-21 05:07:13] 2026-01-21 04:07:13,052 [wrapper] pandaids: 6976782990
[2026-01-21 05:07:13] 2026-01-21 04:07:13,063 [wrapper] cleanup supervisor_pilot  825009 815751
[2026-01-21 05:07:13] 2026-01-21 04:07:13,065 [wrapper] Test setup, not cleaning
[2026-01-21 05:07:13] 2026-01-21 04:07:13,067 [wrapper] apfmon messages muted
[2026-01-21 05:07:13] 2026-01-21 04:07:13,069 [wrapper] ==== wrapper stdout END ====
[2026-01-21 05:07:13] 2026-01-21 04:07:13,071 [wrapper] ==== wrapper stderr END ====
[2026-01-21 05:07:13]  *** Error codes and diagnostics ***
[2026-01-21 05:07:13]     "exeErrorCode": 0,
[2026-01-21 05:07:13]     "exeErrorDiag": "",
[2026-01-21 05:07:13]     "pilotErrorCode": 0,
[2026-01-21 05:07:13]     "pilotErrorDiag": "",
[2026-01-21 05:07:13]  *** Listing of results directory ***
[2026-01-21 05:07:13] total 418076
[2026-01-21 05:07:13] -rw-r--r-- 1 boinc boinc    584422 Jan 20 19:43 pilot3.tar.gz
[2026-01-21 05:07:13] -rw-r--r-- 1 boinc boinc      5111 Jan 20 19:47 queuedata.json
[2026-01-21 05:07:13] -rwx------ 1 boinc boinc     36322 Jan 20 19:48 runpilot2-wrapper.sh
[2026-01-21 05:07:13] -rw-r--r-- 1 boinc boinc       100 Jan 21 03:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-21 05:07:13] -rwxr-xr-x 1 boinc boinc      7986 Jan 21 03:12 run_atlas
[2026-01-21 05:07:13] -rw-r--r-- 1 boinc boinc       105 Jan 21 03:12 job.xml
[2026-01-21 05:07:13] -rw-r--r-- 2 boinc boinc 254946894 Jan 21 03:12 EVNT.48298203._000013.pool.root.1
[2026-01-21 05:07:13] -rw-r--r-- 2 boinc boinc    597769 Jan 21 03:12 input.tar.gz
[2026-01-21 05:07:13] -rw-r--r-- 2 boinc boinc     15845 Jan 21 03:12 start_atlas.sh
[2026-01-21 05:07:13] drwxrwx--x 2 boinc boinc      4096 Jan 21 03:12 shared
[2026-01-21 05:07:13] -rw-r--r-- 1 boinc boinc         0 Jan 21 03:12 boinc_setup_complete
[2026-01-21 05:07:13] -rw-r--r-- 1 boinc boinc      6205 Jan 21 03:12 init_data.xml
[2026-01-21 05:07:13] -rw-r--r-- 1 boinc boinc         0 Jan 21 03:12 boinc_lockfile
[2026-01-21 05:07:13] -rw-r--r-- 1 boinc boinc      2637 Jan 21 03:12 pandaJob.out
[2026-01-21 05:07:13] -rw------- 1 boinc boinc   1002353 Jan 21 03:12 agis_schedconf.cvmfs.json
[2026-01-21 05:07:13] -rw------- 1 boinc boinc   1516246 Jan 21 03:12 agis_ddmendpoints.agis.ALL.json
[2026-01-21 05:07:13] -rw------- 1 boinc boinc       418 Jan 21 03:12 workernode_map.json
[2026-01-21 05:07:13] drwx------ 5 boinc boinc      4096 Jan 21 03:12 pilot3
[2026-01-21 05:07:13] -rw------- 1 boinc boinc 166780511 Jan 21 05:06 HITS.48298205._000304.pool.root.1
[2026-01-21 05:07:13] -rw------- 1 boinc boinc        95 Jan 21 05:06 pilot_heartbeat.json
[2026-01-21 05:07:13] -rw-r--r-- 1 boinc boinc       529 Jan 21 05:06 boinc_task_state.xml
[2026-01-21 05:07:13] -rw------- 1 boinc boinc      1014 Jan 21 05:06 memory_monitor_summary.json
[2026-01-21 05:07:13] -rw------- 1 boinc boinc    252308 Jan 21 05:06 log.48298205._000304.job.log.tgz.1
[2026-01-21 05:07:13] -rw------- 1 boinc boinc      6283 Jan 21 05:06 heartbeat.json
[2026-01-21 05:07:13] -rw-r--r-- 1 boinc boinc      8192 Jan 21 05:06 boinc_mmap_file
[2026-01-21 05:07:13] -rw-r--r-- 1 boinc boinc        27 Jan 21 05:06 wrapper_checkpoint.txt
[2026-01-21 05:07:13] -rw------- 1 boinc boinc       746 Jan 21 05:07 pilotlog.txt
[2026-01-21 05:07:13] -rw------- 1 boinc boinc    981529 Jan 21 05:07 log.48298205._000304.job.log.1
[2026-01-21 05:07:13] -rw------- 1 boinc boinc       357 Jan 21 05:07 output.list
[2026-01-21 05:07:13] -rw-r--r-- 1 boinc boinc       620 Jan 21 05:07 runtime_log
[2026-01-21 05:07:13] -rw------- 1 boinc boinc   1249280 Jan 21 05:07 result.tar.gz
[2026-01-21 05:07:13] -rw------- 1 boinc boinc       657 Jan 21 05:07 zfMLDm9wV28nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmECwKDmyHN0Nn.diag
[2026-01-21 05:07:13] -rw-r--r-- 1 boinc boinc      8896 Jan 21 05:07 runtime_log.err
[2026-01-21 05:07:13] -rw-r--r-- 1 boinc boinc     12626 Jan 21 05:07 stderr.txt
[2026-01-21 05:07:13] HITS file was successfully produced:
[2026-01-21 05:07:13] -rw------- 1 boinc boinc 166780511 Jan 21 05:06 shared/HITS.pool.root.1
[2026-01-21 05:07:13]  *** Contents of shared directory: ***
[2026-01-21 05:07:13] total 413668
[2026-01-21 05:07:13] -rw-r--r-- 2 boinc boinc 254946894 Jan 21 03:12 ATLAS.root_0
[2026-01-21 05:07:13] -rw-r--r-- 2 boinc boinc    597769 Jan 21 03:12 input.tar.gz
[2026-01-21 05:07:13] -rw-r--r-- 2 boinc boinc     15845 Jan 21 03:12 start_atlas.sh
[2026-01-21 05:07:13] -rw------- 1 boinc boinc 166780511 Jan 21 05:06 HITS.pool.root.1
[2026-01-21 05:07:13] -rw------- 1 boinc boinc   1249280 Jan 21 05:07 result.tar.gz
05:07:14 (811727): run_atlas exited; CPU time 13273.017299
05:07:14 (811727): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN