Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:28:25 (2365749): wrapper (7.7.26015): starting
23:28:25 (2365749): wrapper: running run_atlas (--nthreads 4)
[2026-01-20 23:28:25] Arguments: --nthreads 4
[2026-01-20 23:28:25] Threads: 4
[2026-01-20 23:28:25] Checking for CVMFS
[2026-01-20 23:28:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-20 23:28:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-20 23:28:25] Running cvmfs_config stat atlas.cern.ch
[2026-01-20 23:28:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-20 23:28:25] 2.9.2.0 1700928 240 100516 155362 2 186 22191005 36864000 0 130560 0 1818770 99.999 8387 4659 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-20 23:28:25] CVMFS is ok
[2026-01-20 23:28:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-20 23:28:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-20 23:28:25] Further information can be found at the LHC@home message board.
[2026-01-20 23:28:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-20 23:28:25] Checking for apptainer binary...
[2026-01-20 23:28:25] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-20 23:28:25] Running /usr/bin/apptainer --version
[2026-01-20 23:28:25] apptainer version 1.4.1-1.1
[2026-01-20 23:28:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-20 23:28:25] thA325
[2026-01-20 23:28:25] apptainer works
[2026-01-20 23:28:25] Set ATHENA_PROC_NUMBER=4
[2026-01-20 23:28:25] Set ATHENA_CORE_NUMBER=4
[2026-01-20 23:28:25] Starting ATLAS job with PandaID=6976866771
[2026-01-20 23:28:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-20 23:32:40]  *** The last 200 lines of the pilot log: ***
[2026-01-20 23:32:40] 2026-01-20 22:31:40,930 | INFO     | [job] queue monitor thread has finished
[2026-01-20 23:32:40] 2026-01-20 22:31:40,945 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-20 23:32:40] 2026-01-20 22:31:41,019 | INFO     | all data control threads have been joined
[2026-01-20 23:32:40] 2026-01-20 22:31:41,539 | INFO     | [payload] execute_payloads thread has finished
[2026-01-20 23:32:40] 2026-01-20 22:31:41,601 | INFO     | all job control threads have been joined
[2026-01-20 23:32:40] 2026-01-20 22:31:41,697 | INFO     | [job] validate thread has finished
[2026-01-20 23:32:40] 2026-01-20 22:31:41,723 | INFO     | [payload] failed_post thread has finished
[2026-01-20 23:32:40] 2026-01-20 22:31:41,768 | INFO     | [payload] control thread has finished
[2026-01-20 23:32:40] 2026-01-20 22:31:41,805 | INFO     | [job] create_data_payload thread has finished
[2026-01-20 23:32:40] 2026-01-20 22:31:41,866 | INFO     | [payload] validate_pre thread has finished
[2026-01-20 23:32:40] 2026-01-20 22:31:42,005 | INFO     | [data] copytool_in thread has finished
[2026-01-20 23:32:40] 2026-01-20 22:31:42,025 | INFO     | [data] control thread has finished
[2026-01-20 23:32:40] 2026-01-20 22:31:42,101 | INFO     | [data] copytool_out thread has finished
[2026-01-20 23:32:40] 2026-01-20 22:31:42,222 | INFO     | [payload] validate_post thread has finished
[2026-01-20 23:32:40] 2026-01-20 22:31:42,607 | INFO     | [job] control thread has finished
[2026-01-20 23:32:40] 2026-01-20 22:31:43,931 | INFO     | [data] queue_monitor thread has finished
[2026-01-20 23:32:40] 2026-01-20 22:32:10,268 | INFO     | PID=2369554 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-20 23:32:40] 2026-01-20 22:32:10,268 | INFO     | found 0 job(s) in 20 queues
[2026-01-20 23:32:40] 2026-01-20 22:32:10,268 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-20 23:32:40] 2026-01-20 22:32:10,268 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-20 23:32:40] 2026-01-20 22:32:35,469 | INFO     | [monitor] cgroup control has ended
[2026-01-20 23:32:40] 2026-01-20 22:32:35,676 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140276375816000)>', '<ExcThread(monitor, started 140276005840640)>']
[2026-01-20 23:32:40] 2026-01-20 22:32:36,407 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-20 23:32:40] 2026-01-20 22:32:36,408 | INFO     | [monitor] control thread has ended
[2026-01-20 23:32:40] 2026-01-20 22:32:40,702 | INFO     | all workflow threads have been joined
[2026-01-20 23:32:40] 2026-01-20 22:32:40,702 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-20 23:32:40] 2026-01-20 22:32:40,702 | INFO     | traces error code: 0
[2026-01-20 23:32:40] 2026-01-20 22:32:40,702 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-20 23:32:40] 2026-01-20 22:32:40,768 [wrapper] ==== pilot stdout END ====
[2026-01-20 23:32:40] 2026-01-20 22:32:40,771 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-20 23:32:40] 2026-01-20 22:32:40,775 [wrapper] pilotpid: 2369554
[2026-01-20 23:32:40] 2026-01-20 22:32:40,778 [wrapper] Pilot exit status: 0
[2026-01-20 23:32:40] 2026-01-20 22:32:40,787 [wrapper] pandaids: 6976866771
[2026-01-20 23:32:40] 2026-01-20 22:32:40,807 [wrapper] cleanup supervisor_pilot 2369560 2369555
[2026-01-20 23:32:40] 2026-01-20 22:32:40,810 [wrapper] Test setup, not cleaning
[2026-01-20 23:32:40] 2026-01-20 22:32:40,814 [wrapper] apfmon messages muted
[2026-01-20 23:32:40] 2026-01-20 22:32:40,817 [wrapper] ==== wrapper stdout END ====
[2026-01-20 23:32:40] 2026-01-20 22:32:40,820 [wrapper] ==== wrapper stderr END ====
[2026-01-20 23:32:40]  *** Error codes and diagnostics ***
[2026-01-20 23:32:40]     "exeErrorCode": 0,
[2026-01-20 23:32:40]     "exeErrorDiag": "",
[2026-01-20 23:32:40]     "pilotErrorCode": 1305,
[2026-01-20 23:32:40]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139); Logfile error in log.EVNTtoHITS: \"ToolSvc                                                          ERROR Canno",
[2026-01-20 23:32:40]  *** Listing of results directory ***
[2026-01-20 23:32:40] total 260592
[2026-01-20 23:32:40] -rw-r--r-- 1 boinc boinc    584422 Jan 20 20:56 pilot3.tar.gz
[2026-01-20 23:32:40] -rwx------ 1 boinc boinc     36322 Jan 20 21:01 runpilot2-wrapper.sh
[2026-01-20 23:32:40] -rw-r--r-- 1 boinc boinc      5111 Jan 20 21:03 queuedata.json
[2026-01-20 23:32:40] -rw-r--r-- 1 boinc boinc       100 Jan 20 23:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-20 23:32:40] -rwxr-xr-x 1 boinc boinc      7986 Jan 20 23:28 run_atlas
[2026-01-20 23:32:40] -rw-r--r-- 1 boinc boinc       105 Jan 20 23:28 job.xml
[2026-01-20 23:32:40] -rw-r--r-- 2 boinc boinc 262659661 Jan 20 23:28 EVNT.48298165._000031.pool.root.1
[2026-01-20 23:32:40] -rw-r--r-- 2 boinc boinc    597764 Jan 20 23:28 input.tar.gz
[2026-01-20 23:32:40] -rw-r--r-- 2 boinc boinc     15845 Jan 20 23:28 start_atlas.sh
[2026-01-20 23:32:40] drwxrwx--x 2 boinc boinc      4096 Jan 20 23:28 shared
[2026-01-20 23:32:40] -rw-r--r-- 1 boinc boinc         0 Jan 20 23:28 boinc_setup_complete
[2026-01-20 23:32:40] -rw-r--r-- 1 boinc boinc      6369 Jan 20 23:28 init_data.xml
[2026-01-20 23:32:40] -rw-r--r-- 1 boinc boinc         0 Jan 20 23:28 boinc_lockfile
[2026-01-20 23:32:40] -rw-r--r-- 1 boinc boinc      2596 Jan 20 23:28 pandaJob.out
[2026-01-20 23:32:40] -rw------- 1 boinc boinc   1003869 Jan 20 23:28 agis_schedconf.cvmfs.json
[2026-01-20 23:32:40] -rw------- 1 boinc boinc   1516246 Jan 20 23:28 agis_ddmendpoints.agis.ALL.json
[2026-01-20 23:32:40] -rw------- 1 boinc boinc       427 Jan 20 23:28 workernode_map.json
[2026-01-20 23:32:40] drwx------ 5 boinc boinc      4096 Jan 20 23:28 pilot3
[2026-01-20 23:32:40] -rw-r--r-- 1 boinc boinc       524 Jan 20 23:29 boinc_task_state.xml
[2026-01-20 23:32:40] -rw------- 1 boinc boinc       943 Jan 20 23:29 memory_monitor_summary.json
[2026-01-20 23:32:40] -rw------- 1 boinc boinc     44732 Jan 20 23:29 log.48298168._000823.job.log.tgz.1
[2026-01-20 23:32:40] -rw------- 1 boinc boinc        95 Jan 20 23:31 pilot_heartbeat.json
[2026-01-20 23:32:40] -rw------- 1 boinc boinc      7673 Jan 20 23:31 heartbeat.json
[2026-01-20 23:32:40] -rw-r--r-- 1 boinc boinc      8192 Jan 20 23:32 boinc_mmap_file
[2026-01-20 23:32:40] -rw-r--r-- 1 boinc boinc        23 Jan 20 23:32 wrapper_checkpoint.txt
[2026-01-20 23:32:40] -rw------- 1 boinc boinc      4748 Jan 20 23:32 pilotlog.txt
[2026-01-20 23:32:40] -rw------- 1 boinc boinc     86222 Jan 20 23:32 log.48298168._000823.job.log.1
[2026-01-20 23:32:40] -rw------- 1 boinc boinc       188 Jan 20 23:32 output.list
[2026-01-20 23:32:40] -rw-r--r-- 1 boinc boinc       620 Jan 20 23:32 runtime_log
[2026-01-20 23:32:40] -rw------- 1 boinc boinc    153600 Jan 20 23:32 result.tar.gz
[2026-01-20 23:32:40] -rw-r--r-- 1 boinc boinc      8743 Jan 20 23:32 runtime_log.err
[2026-01-20 23:32:40] -rw------- 1 boinc boinc       648 Jan 20 23:32 SIVKDmt5W28n9Rq4apOajLDm4fhM0noT9bVo0NGKDmO6pKDm9sdlOm.diag
[2026-01-20 23:32:40] -rw-r--r-- 1 boinc boinc      6597 Jan 20 23:32 stderr.txt
[2026-01-20 23:32:40] No HITS result produced
[2026-01-20 23:32:40]  *** Contents of shared directory: ***
[2026-01-20 23:32:40] total 257260
[2026-01-20 23:32:40] -rw-r--r-- 2 boinc boinc 262659661 Jan 20 23:28 ATLAS.root_0
[2026-01-20 23:32:40] -rw-r--r-- 2 boinc boinc    597764 Jan 20 23:28 input.tar.gz
[2026-01-20 23:32:40] -rw-r--r-- 2 boinc boinc     15845 Jan 20 23:28 start_atlas.sh
[2026-01-20 23:32:40] -rw------- 1 boinc boinc    153600 Jan 20 23:32 result.tar.gz
23:32:42 (2365749): run_atlas exited; CPU time 20.020076
23:32:42 (2365749): called boinc_finish(0)

</stderr_txt>
]]>

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