Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:25:00 (770606): wrapper (7.7.26015): starting
21:25:00 (770606): wrapper: running run_atlas (--nthreads 2)
[2026-01-20 21:25:00] Arguments: --nthreads 2
[2026-01-20 21:25:00] Threads: 2
[2026-01-20 21:25:00] Checking for CVMFS
[2026-01-20 21:25:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-20 21:25:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-20 21:25:01] Running cvmfs_config stat atlas.cern.ch
[2026-01-20 21:25:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-20 21:25:02] 2.9.2.0 770802 0 30048 155359 3 1 20190418 36864000 0 130560 0 0 0.000 1335 58043 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-20 21:25:02] CVMFS is ok
[2026-01-20 21:25:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-20 21:25:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-20 21:25:02] Further information can be found at the LHC@home message board.
[2026-01-20 21:25:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-20 21:25:02] Checking for apptainer binary...
[2026-01-20 21:25:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-20 21:25:02] Running /usr/bin/apptainer --version
[2026-01-20 21:25:02] apptainer version 1.4.1-1.1
[2026-01-20 21:25:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-20 21:25:02] thA337
[2026-01-20 21:25:02] apptainer works
[2026-01-20 21:25:02] Set ATHENA_PROC_NUMBER=2
[2026-01-20 21:25:02] Set ATHENA_CORE_NUMBER=2
[2026-01-20 21:25:02] Starting ATLAS job with PandaID=6976797997
[2026-01-20 21:25:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-20 23:20:46]  *** The last 200 lines of the pilot log: ***
[2026-01-20 23:20:46] 2026-01-20 22:20:14,830 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-20 23:20:46] 2026-01-20 22:20:14,830 | INFO     | job 6976797997 has completed (purged errors)
[2026-01-20 23:20:46] 2026-01-20 22:20:14,830 | INFO     | overall cleanup function is called
[2026-01-20 23:20:46] 2026-01-20 22:20:15,836 | INFO     | --- collectZombieJob: --- 10, [779269]
[2026-01-20 23:20:46] 2026-01-20 22:20:15,837 | INFO     | zombie collector waiting for pid 779269
[2026-01-20 23:20:46] 2026-01-20 22:20:15,837 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-20 23:20:46] 2026-01-20 22:20:15,837 | INFO     | collected zombie processes
[2026-01-20 23:20:46] 2026-01-20 22:20:15,838 | INFO     | will attempt to kill all subprocesses of pid=779269
[2026-01-20 23:20:46] 2026-01-20 22:20:15,869 | INFO     | process IDs to be killed: [779269] (in reverse order)
[2026-01-20 23:20:46] 2026-01-20 22:20:15,889 | WARNING  | found no corresponding commands to process id(s)
[2026-01-20 23:20:46] 2026-01-20 22:20:15,889 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-20 23:20:46] 2026-01-20 22:20:15,890 | INFO     | did not find any defunct processes belonging to 779269
[2026-01-20 23:20:46] 2026-01-20 22:20:15,890 | INFO     | did not find any defunct processes belonging to 779269
[2026-01-20 23:20:46] 2026-01-20 22:20:15,891 | INFO     | ready for new job
[2026-01-20 23:20:46] 2026-01-20 22:20:15,891 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-20 23:20:46] 2026-01-20 22:20:15,891 | INFO     | **************************************
[2026-01-20 23:20:46] 2026-01-20 22:20:15,891 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-20 23:20:46] 2026-01-20 22:20:15,891 | INFO     | **************************************
[2026-01-20 23:20:46] 2026-01-20 22:20:15,891 | INFO     | 
[2026-01-20 23:20:46] 2026-01-20 22:20:15,891 | INFO     | architecture information:
[2026-01-20 23:20:46] 2026-01-20 22:20:15,892 | INFO     | executing command: cat /etc/os-release
[2026-01-20 23:20:46] 2026-01-20 22:20:15,900 | INFO     | cat /etc/os-release:
[2026-01-20 23:20:46] NAME="CentOS Linux"
[2026-01-20 23:20:46] VERSION="7 (Core)"
[2026-01-20 23:20:46] ID="centos"
[2026-01-20 23:20:46] ID_LIKE="rhel fedora"
[2026-01-20 23:20:46] VERSION_ID="7"
[2026-01-20 23:20:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-20 23:20:46] ANSI_COLOR="0;31"
[2026-01-20 23:20:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-20 23:20:46] HOME_URL="https://www.centos.org/"
[2026-01-20 23:20:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-20 23:20:46] 
[2026-01-20 23:20:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-20 23:20:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-20 23:20:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-20 23:20:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-20 23:20:46] 
[2026-01-20 23:20:46] 2026-01-20 22:20:15,900 | INFO     | **************************************
[2026-01-20 23:20:46] 2026-01-20 22:20:16,403 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-20 23:20:46] 2026-01-20 22:20:16,415 | INFO     | sufficient remaining disk space (491885953024 B)
[2026-01-20 23:20:46] 2026-01-20 22:20:16,415 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-20 23:20:46] 2026-01-20 22:20:16,415 | INFO     | current server update state: UPDATING_FINAL
[2026-01-20 23:20:46] 2026-01-20 22:20:16,415 | INFO     | update_server=False
[2026-01-20 23:20:46] 2026-01-20 22:20:16,415 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-20 23:20:46] 2026-01-20 22:20:16,415 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-20 23:20:46] 2026-01-20 22:20:16,415 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-20 23:20:46] 2026-01-20 22:20:16,942 | INFO     | all payload control threads have been joined
[2026-01-20 23:20:46] 2026-01-20 22:20:17,123 | INFO     | all data control threads have been joined
[2026-01-20 23:20:46] 2026-01-20 22:20:17,388 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-20 23:20:46] 2026-01-20 22:20:17,389 | INFO     | aborting loop
[2026-01-20 23:20:46] 2026-01-20 22:20:17,421 | INFO     | [job] retrieve thread has finished
[2026-01-20 23:20:46] 2026-01-20 22:20:17,421 | INFO     | [job] queue monitor thread has finished
[2026-01-20 23:20:46] 2026-01-20 22:20:17,658 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-20 23:20:46] 2026-01-20 22:20:17,682 | INFO     | all job control threads have been joined
[2026-01-20 23:20:46] 2026-01-20 22:20:17,685 | INFO     | [payload] validate_post thread has finished
[2026-01-20 23:20:46] 2026-01-20 22:20:17,877 | INFO     | [payload] validate_pre thread has finished
[2026-01-20 23:20:46] 2026-01-20 22:20:17,892 | INFO     | [job] validate thread has finished
[2026-01-20 23:20:46] 2026-01-20 22:20:17,948 | INFO     | [payload] control thread has finished
[2026-01-20 23:20:46] 2026-01-20 22:20:18,040 | INFO     | [data] copytool_in thread has finished
[2026-01-20 23:20:46] 2026-01-20 22:20:18,114 | INFO     | [job] create_data_payload thread has finished
[2026-01-20 23:20:46] 2026-01-20 22:20:18,129 | INFO     | [data] control thread has finished
[2026-01-20 23:20:46] 2026-01-20 22:20:18,395 | INFO     | [job] job monitor thread has finished
[2026-01-20 23:20:46] 2026-01-20 22:20:18,688 | INFO     | [job] control thread has finished
[2026-01-20 23:20:46] 2026-01-20 22:20:18,722 | INFO     | [payload] execute_payloads thread has finished
[2026-01-20 23:20:46] 2026-01-20 22:20:18,750 | INFO     | [payload] failed_post thread has finished
[2026-01-20 23:20:46] 2026-01-20 22:20:19,665 | INFO     | [data] copytool_out thread has finished
[2026-01-20 23:20:46] 2026-01-20 22:20:20,422 | INFO     | [data] queue_monitor thread has finished
[2026-01-20 23:20:46] 2026-01-20 22:20:26,985 | INFO     | job.realtimelogging is not enabled
[2026-01-20 23:20:46] 2026-01-20 22:20:27,991 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-20 23:20:46] 2026-01-20 22:20:32,724 | INFO     | [monitor] cgroup control has ended
[2026-01-20 23:20:46] 2026-01-20 22:20:32,873 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140645305595712)>', '<ExcThread(monitor, started 140644676794112)>']
[2026-01-20 23:20:46] 2026-01-20 22:20:37,898 | INFO     | all workflow threads have been joined
[2026-01-20 23:20:46] 2026-01-20 22:20:37,899 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-20 23:20:46] 2026-01-20 22:20:37,899 | INFO     | traces error code: 0
[2026-01-20 23:20:46] 2026-01-20 22:20:37,900 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-20 23:20:46] 2026-01-20 22:20:46,574 | INFO     | PID=774860 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-20 23:20:46] 2026-01-20 22:20:46,575 | INFO     | found 0 job(s) in 20 queues
[2026-01-20 23:20:46] 2026-01-20 22:20:46,575 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-20 23:20:46] 2026-01-20 22:20:46,575 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-20 23:20:46] 2026-01-20 22:20:46,575 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-20 23:20:46] 2026-01-20 22:20:46,575 | INFO     | [monitor] control thread has ended
[2026-01-20 23:20:46] 2026-01-20 22:20:46,614 [wrapper] ==== pilot stdout END ====
[2026-01-20 23:20:46] 2026-01-20 22:20:46,617 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-20 23:20:46] 2026-01-20 22:20:46,619 [wrapper] pilotpid: 774860
[2026-01-20 23:20:46] 2026-01-20 22:20:46,621 [wrapper] Pilot exit status: 0
[2026-01-20 23:20:46] 2026-01-20 22:20:46,627 [wrapper] pandaids: 6976797997
[2026-01-20 23:20:46] 2026-01-20 22:20:46,639 [wrapper] cleanup supervisor_pilot  784231 774861
[2026-01-20 23:20:46] 2026-01-20 22:20:46,641 [wrapper] Test setup, not cleaning
[2026-01-20 23:20:46] 2026-01-20 22:20:46,643 [wrapper] apfmon messages muted
[2026-01-20 23:20:46] 2026-01-20 22:20:46,645 [wrapper] ==== wrapper stdout END ====
[2026-01-20 23:20:46] 2026-01-20 22:20:46,647 [wrapper] ==== wrapper stderr END ====
[2026-01-20 23:20:46]  *** Error codes and diagnostics ***
[2026-01-20 23:20:46]     "exeErrorCode": 0,
[2026-01-20 23:20:46]     "exeErrorDiag": "",
[2026-01-20 23:20:46]     "pilotErrorCode": 0,
[2026-01-20 23:20:46]     "pilotErrorDiag": "",
[2026-01-20 23:20:46]  *** Listing of results directory ***
[2026-01-20 23:20:46] total 423468
[2026-01-20 23:20:46] -rw-r--r-- 1 boinc boinc    584422 Jan 20 19:43 pilot3.tar.gz
[2026-01-20 23:20:46] -rw-r--r-- 1 boinc boinc      5111 Jan 20 20:01 queuedata.json
[2026-01-20 23:20:46] -rwx------ 1 boinc boinc     36322 Jan 20 20:01 runpilot2-wrapper.sh
[2026-01-20 23:20:46] -rw-r--r-- 1 boinc boinc       100 Jan 20 21:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-20 23:20:46] -rwxr-xr-x 1 boinc boinc      7986 Jan 20 21:25 run_atlas
[2026-01-20 23:20:46] -rw-r--r-- 1 boinc boinc       105 Jan 20 21:25 job.xml
[2026-01-20 23:20:46] -rw-r--r-- 2 boinc boinc 259978961 Jan 20 21:25 EVNT.48298165._000030.pool.root.1
[2026-01-20 23:20:46] -rw-r--r-- 2 boinc boinc    597771 Jan 20 21:25 input.tar.gz
[2026-01-20 23:20:46] -rw-r--r-- 2 boinc boinc     15845 Jan 20 21:25 start_atlas.sh
[2026-01-20 23:20:46] drwxrwx--x 2 boinc boinc      4096 Jan 20 21:25 shared
[2026-01-20 23:20:46] -rw-r--r-- 1 boinc boinc         0 Jan 20 21:25 boinc_setup_complete
[2026-01-20 23:20:46] -rw-r--r-- 1 boinc boinc      6205 Jan 20 21:25 init_data.xml
[2026-01-20 23:20:46] -rw-r--r-- 1 boinc boinc         0 Jan 20 21:25 boinc_lockfile
[2026-01-20 23:20:46] -rw-r--r-- 1 boinc boinc      2604 Jan 20 21:25 pandaJob.out
[2026-01-20 23:20:46] -rw------- 1 boinc boinc   1003869 Jan 20 21:25 agis_schedconf.cvmfs.json
[2026-01-20 23:20:46] -rw------- 1 boinc boinc   1516246 Jan 20 21:25 agis_ddmendpoints.agis.ALL.json
[2026-01-20 23:20:46] -rw------- 1 boinc boinc       419 Jan 20 21:25 workernode_map.json
[2026-01-20 23:20:46] drwx------ 5 boinc boinc      4096 Jan 20 21:25 pilot3
[2026-01-20 23:20:46] -rw------- 1 boinc boinc 167229207 Jan 20 23:19 HITS.48298168._000637.pool.root.1
[2026-01-20 23:20:46] -rw-r--r-- 1 boinc boinc       529 Jan 20 23:19 boinc_task_state.xml
[2026-01-20 23:20:46] -rw------- 1 boinc boinc      1010 Jan 20 23:20 memory_monitor_summary.json
[2026-01-20 23:20:46] -rw------- 1 boinc boinc    261949 Jan 20 23:20 log.48298168._000637.job.log.tgz.1
[2026-01-20 23:20:46] -rw------- 1 boinc boinc      6286 Jan 20 23:20 heartbeat.json
[2026-01-20 23:20:46] -rw-r--r-- 1 boinc boinc      8192 Jan 20 23:20 boinc_mmap_file
[2026-01-20 23:20:46] -rw-r--r-- 1 boinc boinc        27 Jan 20 23:20 wrapper_checkpoint.txt
[2026-01-20 23:20:46] -rw------- 1 boinc boinc       746 Jan 20 23:20 pilotlog.txt
[2026-01-20 23:20:46] -rw------- 1 boinc boinc        95 Jan 20 23:20 pilot_heartbeat.json
[2026-01-20 23:20:46] -rw------- 1 boinc boinc    990936 Jan 20 23:20 log.48298168._000637.job.log.1
[2026-01-20 23:20:46] -rw------- 1 boinc boinc       357 Jan 20 23:20 output.list
[2026-01-20 23:20:46] -rw-r--r-- 1 boinc boinc       620 Jan 20 23:20 runtime_log
[2026-01-20 23:20:46] -rw------- 1 boinc boinc   1269760 Jan 20 23:20 result.tar.gz
[2026-01-20 23:20:46] -rw-r--r-- 1 boinc boinc      8896 Jan 20 23:20 runtime_log.err
[2026-01-20 23:20:46] -rw------- 1 boinc boinc       657 Jan 20 23:20 j0jMDmEAW28n9Rq4apOajLDm4fhM0noT9bVo0NGKDmMopKDmt1nqpm.diag
[2026-01-20 23:20:46] -rw-r--r-- 1 boinc boinc     10975 Jan 20 23:20 stderr.txt
[2026-01-20 23:20:46] HITS file was successfully produced:
[2026-01-20 23:20:46] -rw------- 1 boinc boinc 167229207 Jan 20 23:19 shared/HITS.pool.root.1
[2026-01-20 23:20:46]  *** Contents of shared directory: ***
[2026-01-20 23:20:46] total 419044
[2026-01-20 23:20:46] -rw-r--r-- 2 boinc boinc 259978961 Jan 20 21:25 ATLAS.root_0
[2026-01-20 23:20:46] -rw-r--r-- 2 boinc boinc    597771 Jan 20 21:25 input.tar.gz
[2026-01-20 23:20:46] -rw-r--r-- 2 boinc boinc     15845 Jan 20 21:25 start_atlas.sh
[2026-01-20 23:20:46] -rw------- 1 boinc boinc 167229207 Jan 20 23:19 HITS.pool.root.1
[2026-01-20 23:20:46] -rw------- 1 boinc boinc   1269760 Jan 20 23:20 result.tar.gz
23:20:48 (770606): run_atlas exited; CPU time 13355.986320
23:20:48 (770606): called boinc_finish(0)

</stderr_txt>
]]>

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