Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
03:55:07 (1245767): wrapper (7.7.26015): starting
03:55:07 (1245767): wrapper: running run_atlas (--nthreads 4)
[2026-01-21 03:55:07] Arguments: --nthreads 4
[2026-01-21 03:55:07] Threads: 4
[2026-01-21 03:55:07] Checking for CVMFS
[2026-01-21 03:55:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-21 03:55:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-21 03:55:07] Running cvmfs_config stat atlas.cern.ch
[2026-01-21 03:55:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-21 03:55:08] 2.13.3.0 80730 1595 47620 155366 3 50 18375674 33554433 0 130560 0 315278 99.975 52391 225 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2026-01-21 03:55:08] CVMFS is ok
[2026-01-21 03:55:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-21 03:55:08] Checking for apptainer binary...
[2026-01-21 03:55:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-21 03:55:08] Running /usr/bin/apptainer --version
[2026-01-21 03:55:08] apptainer version 1.4.5
[2026-01-21 03:55:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-21 03:55:08] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2026-01-21 03:55:08] apptainer works
[2026-01-21 03:55:08] Set ATHENA_PROC_NUMBER=4
[2026-01-21 03:55:08] Set ATHENA_CORE_NUMBER=4
[2026-01-21 03:55:08] Starting ATLAS job with PandaID=6976662789
[2026-01-21 03:55:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-21 04:54:26]  *** The last 200 lines of the pilot log: ***
[2026-01-21 04:54:26]  surl=/home/ek/BOINC/slots/1/PanDA_Pilot-6976662789/log.48298225._000160.job.log.tgz.1
[2026-01-21 04:54:26]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ee/38/log.48298225._000160.job.log.tgz.1
[2026-01-21 04:54:26]  workdir=None
[2026-01-21 04:54:26] ]
[2026-01-21 04:54:26] 2026-01-21 02:53:25,267 | INFO     | transferring file log.48298225._000160.job.log.tgz.1 from /home/ek/BOINC/slots/1/PanDA_Pilot-6976662789/log.48298225._000160.job.log.tgz.1 to /home/ek/BOINC/slots/
[2026-01-21 04:54:26] 2026-01-21 02:53:25,267 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/1/PanDA_Pilot-6976662789/log.48298225._000160.job.log.tgz.1 /home/ek/BOINC/slots/1/log.48298225._000160.job
[2026-01-21 04:54:26] 2026-01-21 02:53:25,276 | INFO     | adding to output.list: log.48298225._000160.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ee/38/log.48298225._000160.job.log.tg
[2026-01-21 04:54:26] 2026-01-21 02:53:25,276 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-21 04:54:26] 2026-01-21 02:53:25,276 | INFO     | summary of transferred files:
[2026-01-21 04:54:26] 2026-01-21 02:53:25,276 | INFO     |  -- lfn=log.48298225._000160.job.log.tgz.1, status_code=0, status=transferred
[2026-01-21 04:54:26] 2026-01-21 02:53:25,276 | INFO     | stage-out finished correctly
[2026-01-21 04:54:26] 2026-01-21 02:53:25,818 | INFO     | time since job start (3490s) is within the limit (349056.0s)
[2026-01-21 04:54:26] 2026-01-21 02:53:27,001 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-21 04:54:26] 2026-01-21 02:53:27,769 | WARNING  | process 1254221 can no longer be monitored (due to stat problems) - aborting
[2026-01-21 04:54:26] 2026-01-21 02:53:27,770 | INFO     | using path: /home/ek/BOINC/slots/1/PanDA_Pilot-6976662789/memory_monitor_summary.json (trf name=prmon)
[2026-01-21 04:54:26] 2026-01-21 02:53:27,770 | INFO     | using path: /home/ek/BOINC/slots/1/PanDA_Pilot-6976662789/memory_monitor_summary.json (trf name=prmon)
[2026-01-21 04:54:26] 2026-01-21 02:53:27,770 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-21 04:54:26] 2026-01-21 02:53:27,770 | WARNING  | maxPSS not found in memory monitor output
[2026-01-21 04:54:26] 2026-01-21 02:53:27,770 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2272926 B
[2026-01-21 04:54:26] 2026-01-21 02:53:27,770 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15349 B
[2026-01-21 04:54:26] 2026-01-21 02:53:27,770 | INFO     | executing command: df -mP /home/ek/BOINC/slots/1
[2026-01-21 04:54:26] 2026-01-21 02:53:27,777 | INFO     | sufficient remaining disk space (74358718464 B)
[2026-01-21 04:54:26] 2026-01-21 02:53:27,777 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-01-21 04:54:26] 2026-01-21 02:53:27,778 | INFO     | size of work directory /home/ek/BOINC/slots/1/PanDA_Pilot-6976662789: 2564764 B (within 5033164800 B limit)
[2026-01-21 04:54:26] 2026-01-21 02:53:27,778 | INFO     | pfn file=/home/ek/BOINC/slots/1/PanDA_Pilot-6976662789/HITS.48298225._000160.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-21 04:54:26] 2026-01-21 02:53:27,778 | INFO     | total size of present files: 0 B (workdir size: 2564764 B)
[2026-01-21 04:54:26] 2026-01-21 02:53:27,778 | INFO     | output file size check: skipping output file /home/ek/BOINC/slots/1/PanDA_Pilot-6976662789/HITS.48298225._000160.pool.root.1 since it does not exist
[2026-01-21 04:54:26] 2026-01-21 02:53:27,823 | INFO     | time since job start (3492s) is within the limit (349056.0s)
[2026-01-21 04:54:26] 2026-01-21 02:53:27,869 | INFO     | number of running child processes to parent process 1254221: 1
[2026-01-21 04:54:26] 2026-01-21 02:53:27,869 | INFO     | maximum number of monitored processes: 6
[2026-01-21 04:54:26] 2026-01-21 02:53:29,789 | INFO     | job 6976662789 has state=finished
[2026-01-21 04:54:26] 2026-01-21 02:53:29,789 | INFO     | preparing for final server update for job 6976662789 in state='finished'
[2026-01-21 04:54:26] 2026-01-21 02:53:29,789 | INFO     | reading metadata from: /home/ek/BOINC/slots/1/PanDA_Pilot-6976662789/jobReport.json
[2026-01-21 04:54:26] 2026-01-21 02:53:29,790 | INFO     | added worker_node to metadata from /home/ek/BOINC/slots/1/workernode_map.json
[2026-01-21 04:54:26] 2026-01-21 02:53:29,790 | INFO     | this job has now completed (state=finished)
[2026-01-21 04:54:26] 2026-01-21 02:53:29,790 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-21 04:54:26] 2026-01-21 02:53:29,790 | INFO     | log transfer has been attempted: DONE
[2026-01-21 04:54:26] 2026-01-21 02:53:29,790 | INFO     | job 6976662789 has finished - writing final server update
[2026-01-21 04:54:26] 2026-01-21 02:53:29,790 | INFO     | total number of processed events: 400 (read)
[2026-01-21 04:54:26] 2026-01-21 02:53:29,792 | INFO     | using path: /home/ek/BOINC/slots/1/PanDA_Pilot-6976662789/memory_monitor_summary.json (trf name=prmon)
[2026-01-21 04:54:26] 2026-01-21 02:53:29,793 | INFO     | extracted standard info from prmon json
[2026-01-21 04:54:26] 2026-01-21 02:53:29,793 | INFO     | extracted standard memory fields from prmon json
[2026-01-21 04:54:26] 2026-01-21 02:53:29,793 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-21 04:54:26] 2026-01-21 02:53:29,793 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-21 04:54:26] 2026-01-21 02:53:29,793 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-21 04:54:26] 2026-01-21 02:53:29,793 | INFO     | fitting pss+swap vs Time
[2026-01-21 04:54:26] 2026-01-21 02:53:29,793 | INFO     | sum of square deviations: 38744912.5
[2026-01-21 04:54:26] 2026-01-21 02:53:29,794 | INFO     | sum of deviations: -6166653388.5
[2026-01-21 04:54:26] 2026-01-21 02:53:29,794 | INFO     | mean x: 1768962330.5
[2026-01-21 04:54:26] 2026-01-21 02:53:29,794 | INFO     | mean y: 2506181.02
[2026-01-21 04:54:26] 2026-01-21 02:53:29,794 | INFO     | intersect: 281551149490.1688
[2026-01-21 04:54:26] 2026-01-21 02:53:29,794 | INFO     | chi2: 0.11026308918149853
[2026-01-21 04:54:26] 2026-01-21 02:53:29,794 | INFO     | current memory leak: -159.16 B/s (using 50 data points, chi2=0.11)
[2026-01-21 04:54:26] 2026-01-21 02:53:29,794 | INFO     | could have reported an average CPU frequency of 3707 MHz (5 samples)
[2026-01-21 04:54:26] 2026-01-21 02:53:29,794 | INFO     | ..............................
[2026-01-21 04:54:26] 2026-01-21 02:53:29,794 | INFO     | . Timing measurements:
[2026-01-21 04:54:26] 2026-01-21 02:53:29,794 | INFO     | . get job = 0 s
[2026-01-21 04:54:26] 2026-01-21 02:53:29,794 | INFO     | . initial setup = 3 s
[2026-01-21 04:54:26] 2026-01-21 02:53:29,794 | INFO     | . payload setup = 2 s
[2026-01-21 04:54:26] 2026-01-21 02:53:29,794 | INFO     | . stage-in = 0 s
[2026-01-21 04:54:26] 2026-01-21 02:53:29,794 | INFO     | . payload execution = 3472 s
[2026-01-21 04:54:26] 2026-01-21 02:53:29,794 | INFO     | . stage-out = 0 s
[2026-01-21 04:54:26] 2026-01-21 02:53:29,794 | INFO     | . log creation = 0 s
[2026-01-21 04:54:26] 2026-01-21 02:53:29,794 | INFO     | ..............................
[2026-01-21 04:54:26] 2026-01-21 02:53:29,828 | INFO     | time since job start (3494s) is within the limit (349056.0s)
[2026-01-21 04:54:26] 2026-01-21 02:53:30,230 | INFO     | 
[2026-01-21 04:54:26] 2026-01-21 02:53:30,230 | INFO     | job summary report
[2026-01-21 04:54:26] 2026-01-21 02:53:30,231 | INFO     | --------------------------------------------------
[2026-01-21 04:54:26] 2026-01-21 02:53:30,231 | INFO     | PanDA job id: 6976662789
[2026-01-21 04:54:26] 2026-01-21 02:53:30,231 | INFO     | task id: 48298225
[2026-01-21 04:54:26] 2026-01-21 02:53:30,231 | INFO     | errors: (none)
[2026-01-21 04:54:26] 2026-01-21 02:53:30,231 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-21 04:54:26] 2026-01-21 02:53:30,231 | INFO     | pilot state: finished 
[2026-01-21 04:54:26] 2026-01-21 02:53:30,231 | INFO     | transexitcode: 0
[2026-01-21 04:54:26] 2026-01-21 02:53:30,231 | INFO     | exeerrorcode: 0
[2026-01-21 04:54:26] 2026-01-21 02:53:30,231 | INFO     | exeerrordiag: 
[2026-01-21 04:54:26] 2026-01-21 02:53:30,231 | INFO     | exitcode: 0
[2026-01-21 04:54:26] 2026-01-21 02:53:30,231 | INFO     | exitmsg: OK
[2026-01-21 04:54:26] 2026-01-21 02:53:30,231 | INFO     | cpuconsumptiontime: 13307 s
[2026-01-21 04:54:26] 2026-01-21 02:53:30,231 | INFO     | nevents: 400
[2026-01-21 04:54:26] 2026-01-21 02:53:30,231 | INFO     | neventsw: 0
[2026-01-21 04:54:26] 2026-01-21 02:53:30,231 | INFO     | pid: 1254221
[2026-01-21 04:54:26] 2026-01-21 02:53:30,231 | INFO     | pgrp: 1254221
[2026-01-21 04:54:26] 2026-01-21 02:53:30,231 | INFO     | corecount: 4
[2026-01-21 04:54:26] 2026-01-21 02:53:30,231 | INFO     | event service: False
[2026-01-21 04:54:26] 2026-01-21 02:53:30,231 | INFO     | sizes: {0: 2283940, 1: 2284401, 11: 2284401, 3479: 2319161, 3481: 2319161, 3484: 2319415}
[2026-01-21 04:54:26] 2026-01-21 02:53:30,231 | INFO     | --------------------------------------------------
[2026-01-21 04:54:26] 2026-01-21 02:53:30,231 | INFO     | 
[2026-01-21 04:54:26] 2026-01-21 02:53:30,231 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/1
[2026-01-21 04:54:26] 2026-01-21 02:53:30,240 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-21 04:54:26] 2026-01-21 02:53:30,240 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-21 04:54:26] 2026-01-21 02:53:30,240 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-21 04:54:26] 2026-01-21 02:53:30,240 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-21 04:54:26] 2026-01-21 02:53:30,240 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-21 04:54:26] 2026-01-21 02:53:30,240 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-21 04:54:26] 2026-01-21 02:53:30,240 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-21 04:54:26] 2026-01-21 02:53:30,240 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-21 04:54:26] 2026-01-21 02:53:30,240 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-21 04:54:26] 2026-01-21 02:53:30,240 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-21 04:54:26] 2026-01-21 02:53:30,240 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-21 04:54:26] 2026-01-21 02:53:30,240 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-21 04:54:26] 2026-01-21 02:53:30,240 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-21 04:54:26] 2026-01-21 02:53:30,240 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-21 04:54:26] 2026-01-21 02:53:30,240 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-21 04:54:26] 2026-01-21 02:53:30,240 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-21 04:54:26] 2026-01-21 02:53:30,240 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-21 04:54:26] 2026-01-21 02:53:30,240 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-21 04:54:26] 2026-01-21 02:53:30,240 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-21 04:54:26] 2026-01-21 02:53:30,240 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-21 04:54:26] 2026-01-21 02:53:30,240 | INFO     | job 6976662789 has completed (purged errors)
[2026-01-21 04:54:26] 2026-01-21 02:53:30,240 | INFO     | overall cleanup function is called
[2026-01-21 04:54:26] 2026-01-21 02:53:31,247 | INFO     | --- collectZombieJob: --- 10, [1254221]
[2026-01-21 04:54:26] 2026-01-21 02:53:31,247 | INFO     | zombie collector waiting for pid 1254221
[2026-01-21 04:54:26] 2026-01-21 02:53:31,247 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-21 04:54:26] 2026-01-21 02:53:31,247 | INFO     | collected zombie processes
[2026-01-21 04:54:26] 2026-01-21 02:53:31,247 | INFO     | will attempt to kill all subprocesses of pid=1254221
[2026-01-21 04:54:26] 2026-01-21 02:53:31,338 | INFO     | process IDs to be killed: [1254221] (in reverse order)
[2026-01-21 04:54:26] 2026-01-21 02:53:31,368 | WARNING  | found no corresponding commands to process id(s)
[2026-01-21 04:54:26] 2026-01-21 02:53:31,369 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-21 04:54:26] 2026-01-21 02:53:31,372 | INFO     | did not find any defunct processes belonging to 1254221
[2026-01-21 04:54:26] 2026-01-21 02:53:31,374 | INFO     | did not find any defunct processes belonging to 1254221
[2026-01-21 04:54:26] 2026-01-21 02:53:31,374 | INFO     | ready for new job
[2026-01-21 04:54:26] 2026-01-21 02:53:31,374 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-21 04:54:26] 2026-01-21 02:53:31,375 | INFO     | **************************************
[2026-01-21 04:54:26] 2026-01-21 02:53:31,375 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-21 04:54:26] 2026-01-21 02:53:31,375 | INFO     | **************************************
[2026-01-21 04:54:26] 2026-01-21 02:53:31,375 | INFO     | 
[2026-01-21 04:54:26] 2026-01-21 02:53:31,375 | INFO     | architecture information:
[2026-01-21 04:54:26] 2026-01-21 02:53:31,376 | INFO     | executing command: cat /etc/os-release
[2026-01-21 04:54:26] 2026-01-21 02:53:31,382 | INFO     | cat /etc/os-release:
[2026-01-21 04:54:26] NAME="CentOS Linux"
[2026-01-21 04:54:26] VERSION="7 (Core)"
[2026-01-21 04:54:26] ID="centos"
[2026-01-21 04:54:26] ID_LIKE="rhel fedora"
[2026-01-21 04:54:26] VERSION_ID="7"
[2026-01-21 04:54:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-21 04:54:26] ANSI_COLOR="0;31"
[2026-01-21 04:54:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-21 04:54:26] HOME_URL="https://www.centos.org/"
[2026-01-21 04:54:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-21 04:54:26] 
[2026-01-21 04:54:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-21 04:54:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-21 04:54:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-21 04:54:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-21 04:54:26] 
[2026-01-21 04:54:26] 2026-01-21 02:53:31,382 | INFO     | **************************************
[2026-01-21 04:54:26] 2026-01-21 02:53:31,885 | INFO     | executing command: df -mP /home/ek/BOINC/slots/1
[2026-01-21 04:54:26] 2026-01-21 02:53:31,891 | INFO     | sufficient remaining disk space (74361864192 B)
[2026-01-21 04:54:26] 2026-01-21 02:53:31,891 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-21 04:54:26] 2026-01-21 02:53:31,892 | INFO     | current server update state: UPDATING_FINAL
[2026-01-21 04:54:26] 2026-01-21 02:53:31,892 | INFO     | update_server=False
[2026-01-21 04:54:26] 2026-01-21 02:53:31,892 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-21 04:54:26] 2026-01-21 02:53:31,892 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-21 04:54:26] 2026-01-21 02:53:31,892 | INFO     | aborting loop
[2026-01-21 04:54:26] 2026-01-21 02:53:32,437 | INFO     | all data control threads have been joined
[2026-01-21 04:54:26] 2026-01-21 02:53:32,519 | INFO     | all job control threads have been joined
[2026-01-21 04:54:26] 2026-01-21 02:53:32,850 | INFO     | all payload control threads have been joined
[2026-01-21 04:54:26] 2026-01-21 02:53:32,897 | INFO     | [job] retrieve thread has finished
[2026-01-21 04:54:26] 2026-01-21 02:53:32,897 | INFO     | [job] job monitor thread has finished
[2026-01-21 04:54:26] 2026-01-21 02:53:32,999 | INFO     | [data] copytool_in thread has finished
[2026-01-21 04:54:26] 2026-01-21 02:53:33,035 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-21 04:54:26] 2026-01-21 02:53:33,314 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-21 04:54:26] 2026-01-21 02:53:33,442 | INFO     | [data] control thread has finished
[2026-01-21 04:54:26] 2026-01-21 02:53:33,521 | INFO     | [payload] execute_payloads thread has finished
[2026-01-21 04:54:26] 2026-01-21 02:53:33,524 | INFO     | [job] control thread has finished
[2026-01-21 04:54:26] 2026-01-21 02:53:33,528 | INFO     | [payload] failed_post thread has finished
[2026-01-21 04:54:26] 2026-01-21 02:53:33,853 | INFO     | [payload] control thread has finished
[2026-01-21 04:54:26] 2026-01-21 02:53:34,051 | INFO     | [payload] validate_post thread has finished
[2026-01-21 04:54:26] 2026-01-21 02:53:34,271 | INFO     | [job] validate thread has finished
[2026-01-21 04:54:26] 2026-01-21 02:53:34,319 | INFO     | [job] create_data_payload thread has finished
[2026-01-21 04:54:26] 2026-01-21 02:53:34,357 | INFO     | [payload] validate_pre thread has finished
[2026-01-21 04:54:26] 2026-01-21 02:53:34,832 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-21 04:54:26] 2026-01-21 02:53:35,320 | INFO     | [data] copytool_out thread has finished
[2026-01-21 04:54:26] 2026-01-21 02:53:35,837 | INFO     | [job] queue monitor thread has finished
[2026-01-21 04:54:26] 2026-01-21 02:53:37,040 | INFO     | [data] queue_monitor thread has finished
[2026-01-21 04:54:26] 2026-01-21 02:53:42,923 | INFO     | job.realtimelogging is not enabled
[2026-01-21 04:54:26] 2026-01-21 02:53:43,928 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-21 04:54:26] 2026-01-21 02:54:02,989 | INFO     | PID=1249596 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-21 04:54:26] 2026-01-21 02:54:02,990 | INFO     | found 0 job(s) in 20 queues
[2026-01-21 04:54:26] 2026-01-21 02:54:02,990 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-21 04:54:26] 2026-01-21 02:54:02,990 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-21 04:54:26] 2026-01-21 02:54:20,409 | INFO     | [monitor] cgroup control has ended
[2026-01-21 04:54:26] 2026-01-21 02:54:21,222 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140031703226176)>', '<ExcThread(monitor, started 140031226275584)>']
[2026-01-21 04:54:26] 2026-01-21 02:54:22,081 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-21 04:54:26] 2026-01-21 02:54:22,081 | INFO     | [monitor] control thread has ended
[2026-01-21 04:54:26] 2026-01-21 02:54:26,233 | INFO     | all workflow threads have been joined
[2026-01-21 04:54:26] 2026-01-21 02:54:26,234 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-21 04:54:26] 2026-01-21 02:54:26,234 | INFO     | traces error code: 0
[2026-01-21 04:54:26] 2026-01-21 02:54:26,234 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-21 04:54:26] 2026-01-21 02:54:26,288 [wrapper] ==== pilot stdout END ====
[2026-01-21 04:54:26] 2026-01-21 02:54:26,289 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-21 04:54:26] 2026-01-21 02:54:26,291 [wrapper] pilotpid: 1249596
[2026-01-21 04:54:26] 2026-01-21 02:54:26,292 [wrapper] Pilot exit status: 0
[2026-01-21 04:54:26] 2026-01-21 02:54:26,298 [wrapper] pandaids: 6976662789
[2026-01-21 04:54:26] 2026-01-21 02:54:26,320 [wrapper] cleanup supervisor_pilot 1288450 1249597
[2026-01-21 04:54:26] 2026-01-21 02:54:26,321 [wrapper] Test setup, not cleaning
[2026-01-21 04:54:26] 2026-01-21 02:54:26,322 [wrapper] apfmon messages muted
[2026-01-21 04:54:26] 2026-01-21 02:54:26,324 [wrapper] ==== wrapper stdout END ====
[2026-01-21 04:54:26] 2026-01-21 02:54:26,325 [wrapper] ==== wrapper stderr END ====
[2026-01-21 04:54:26]  *** Error codes and diagnostics ***
[2026-01-21 04:54:26]     "exeErrorCode": 0,
[2026-01-21 04:54:26]     "exeErrorDiag": "",
[2026-01-21 04:54:26]     "pilotErrorCode": 0,
[2026-01-21 04:54:26]     "pilotErrorDiag": "",
[2026-01-21 04:54:26]  *** Listing of results directory ***
[2026-01-21 04:54:26] total 430148
[2026-01-21 04:54:26] -rw-r--r-- 1 ek ek    584422 Jan 20 18:46 pilot3.tar.gz
[2026-01-21 04:54:26] -rw-r--r-- 1 ek ek      5111 Jan 20 19:24 queuedata.json
[2026-01-21 04:54:26] -rwx------ 1 ek ek     36322 Jan 20 19:24 runpilot2-wrapper.sh
[2026-01-21 04:54:26] -rw-rw-r-- 1 ek ek       100 Jan 21 03:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-21 04:54:26] -rwxr-xr-x 1 ek ek      7986 Jan 21 03:55 run_atlas
[2026-01-21 04:54:26] -rw-rw-r-- 1 ek ek       105 Jan 21 03:55 job.xml
[2026-01-21 04:54:26] -rw-r--r-- 2 ek ek 255994674 Jan 21 03:55 EVNT.48298222._000007.pool.root.1
[2026-01-21 04:54:26] -rw-r--r-- 2 ek ek    597779 Jan 21 03:55 input.tar.gz
[2026-01-21 04:54:26] -rw-r--r-- 2 ek ek     15845 Jan 21 03:55 start_atlas.sh
[2026-01-21 04:54:26] drwxrwx--x 2 ek ek      4096 Jan 21 03:55 shared
[2026-01-21 04:54:26] -rw-rw-r-- 1 ek ek         0 Jan 21 03:55 boinc_setup_complete
[2026-01-21 04:54:26] -rw-rw-r-- 1 ek ek      9841 Jan 21 03:55 init_data.xml
[2026-01-21 04:54:26] -rw-rw-r-- 1 ek ek         0 Jan 21 03:55 boinc_lockfile
[2026-01-21 04:54:26] -rw-rw-r-- 1 ek ek      2619 Jan 21 03:55 pandaJob.out
[2026-01-21 04:54:26] -rw------- 1 ek ek        50 Jan 21 03:55 setup.sh.local
[2026-01-21 04:54:26] -rw------- 1 ek ek   1002353 Jan 21 03:55 agis_schedconf.cvmfs.json
[2026-01-21 04:54:26] -rw------- 1 ek ek   1516246 Jan 21 03:55 agis_ddmendpoints.agis.ALL.json
[2026-01-21 04:54:26] -rw------- 1 ek ek       433 Jan 21 03:55 workernode_map.json
[2026-01-21 04:54:26] drwx------ 5 ek ek      4096 Jan 21 03:55 pilot3
[2026-01-21 04:54:26] -rw------- 1 ek ek 178987438 Jan 21 04:53 HITS.48298225._000160.pool.root.1
[2026-01-21 04:54:26] -rw------- 1 ek ek      1017 Jan 21 04:53 memory_monitor_summary.json
[2026-01-21 04:54:26] -rw-rw-r-- 1 ek ek       529 Jan 21 04:53 boinc_task_state.xml
[2026-01-21 04:54:26] -rw------- 1 ek ek    244740 Jan 21 04:53 log.48298225._000160.job.log.tgz.1
[2026-01-21 04:54:26] -rw------- 1 ek ek      6309 Jan 21 04:53 heartbeat.json
[2026-01-21 04:54:26] -rw------- 1 ek ek        95 Jan 21 04:54 pilot_heartbeat.json
[2026-01-21 04:54:26] -rw-rw-r-- 1 ek ek      8192 Jan 21 04:54 boinc_mmap_file
[2026-01-21 04:54:26] -rw-rw-r-- 1 ek ek        27 Jan 21 04:54 wrapper_checkpoint.txt
[2026-01-21 04:54:26] -rw------- 1 ek ek      4816 Jan 21 04:54 pilotlog.txt
[2026-01-21 04:54:26] -rw------- 1 ek ek    526185 Jan 21 04:54 log.48298225._000160.job.log.1
[2026-01-21 04:54:26] -rw------- 1 ek ek       357 Jan 21 04:54 output.list
[2026-01-21 04:54:26] -rw-rw-r-- 1 ek ek       620 Jan 21 04:54 runtime_log
[2026-01-21 04:54:26] -rw------- 1 ek ek    788480 Jan 21 04:54 result.tar.gz
[2026-01-21 04:54:26] -rw-rw-r-- 1 ek ek      9501 Jan 21 04:54 runtime_log.err
[2026-01-21 04:54:26] -rw------- 1 ek ek       659 Jan 21 04:54 gTLODmddU28n9Rq4apOajLDm4fhM0noT9bVo0NGKDm6NpKDmE3931n.diag
[2026-01-21 04:54:26] -rw-rw-r-- 1 ek ek     22394 Jan 21 04:54 stderr.txt
[2026-01-21 04:54:26] HITS file was successfully produced:
[2026-01-21 04:54:26] -rw------- 1 ek ek 178987438 Jan 21 04:53 shared/HITS.pool.root.1
[2026-01-21 04:54:26]  *** Contents of shared directory: ***
[2026-01-21 04:54:26] total 426172
[2026-01-21 04:54:26] -rw-r--r-- 2 ek ek 255994674 Jan 21 03:55 ATLAS.root_0
[2026-01-21 04:54:26] -rw-r--r-- 2 ek ek    597779 Jan 21 03:55 input.tar.gz
[2026-01-21 04:54:26] -rw-r--r-- 2 ek ek     15845 Jan 21 03:55 start_atlas.sh
[2026-01-21 04:54:26] -rw------- 1 ek ek 178987438 Jan 21 04:53 HITS.pool.root.1
[2026-01-21 04:54:26] -rw------- 1 ek ek    788480 Jan 21 04:54 result.tar.gz
04:54:27 (1245767): run_atlas exited; CPU time 13339.781750
04:54:27 (1245767): called boinc_finish(0)

</stderr_txt>
]]>

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