Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
08:35:42 (1495021): wrapper (7.7.26015): starting
08:35:42 (1495021): wrapper: running run_atlas (--nthreads 4)
[2026-01-21 08:35:42] Arguments: --nthreads 4
[2026-01-21 08:35:42] Threads: 4
[2026-01-21 08:35:42] Checking for CVMFS
[2026-01-21 08:35:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-21 08:35:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-21 08:35:42] Running cvmfs_config stat atlas.cern.ch
[2026-01-21 08:35:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-21 08:35:42] 2.13.3.0 80730 1876 46080 155374 0 50 18526650 33554433 0 130560 0 512353 99.980 64772 230 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2026-01-21 08:35:42] CVMFS is ok
[2026-01-21 08:35:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-21 08:35:42] Checking for apptainer binary...
[2026-01-21 08:35:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-21 08:35:42] Running /usr/bin/apptainer --version
[2026-01-21 08:35:42] apptainer version 1.4.5
[2026-01-21 08:35:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-21 08:35:42] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2026-01-21 08:35:42] apptainer works
[2026-01-21 08:35:42] Set ATHENA_PROC_NUMBER=4
[2026-01-21 08:35:42] Set ATHENA_CORE_NUMBER=4
[2026-01-21 08:35:42] Starting ATLAS job with PandaID=6976709659
[2026-01-21 08:35:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-21 09:32:08]  *** The last 200 lines of the pilot log: ***
[2026-01-21 09:32:08]  domain=
[2026-01-21 09:32:08]  filesize=234518
[2026-01-21 09:32:08]  filetype=log
[2026-01-21 09:32:08]  guid=dde0947b-1610-42b1-ba27-6cfe98e15293
[2026-01-21 09:32:08]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-21 09:32:08]  is_altstaged=None
[2026-01-21 09:32:08]  is_tar=False
[2026-01-21 09:32:08]  lfn=log.48298321._000253.job.log.tgz.1
[2026-01-21 09:32:08]  mtime=0
[2026-01-21 09:32:08]  protocol_id=None
[2026-01-21 09:32:08]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-21 09:32:08]  replicas=None
[2026-01-21 09:32:08]  scope=mc23_13p6TeV
[2026-01-21 09:32:08]  status=None
[2026-01-21 09:32:08]  status_code=0
[2026-01-21 09:32:08]  storage_token=
[2026-01-21 09:32:08]  surl=/home/ek/BOINC/slots/1/PanDA_Pilot-6976709659/log.48298321._000253.job.log.tgz.1
[2026-01-21 09:32:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8f/1a/log.48298321._000253.job.log.tgz.1
[2026-01-21 09:32:08]  workdir=None
[2026-01-21 09:32:08] ]
[2026-01-21 09:32:08] 2026-01-21 07:31:05,763 | INFO     | transferring file log.48298321._000253.job.log.tgz.1 from /home/ek/BOINC/slots/1/PanDA_Pilot-6976709659/log.48298321._000253.job.log.tgz.1 to /home/ek/BOINC/slots/
[2026-01-21 09:32:08] 2026-01-21 07:31:05,763 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/1/PanDA_Pilot-6976709659/log.48298321._000253.job.log.tgz.1 /home/ek/BOINC/slots/1/log.48298321._000253.job
[2026-01-21 09:32:08] 2026-01-21 07:31:05,771 | INFO     | adding to output.list: log.48298321._000253.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8f/1a/log.48298321._000253.job.log.tg
[2026-01-21 09:32:08] 2026-01-21 07:31:05,772 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-21 09:32:08] 2026-01-21 07:31:05,772 | INFO     | summary of transferred files:
[2026-01-21 09:32:08] 2026-01-21 07:31:05,772 | INFO     |  -- lfn=log.48298321._000253.job.log.tgz.1, status_code=0, status=transferred
[2026-01-21 09:32:08] 2026-01-21 07:31:05,772 | INFO     | stage-out finished correctly
[2026-01-21 09:32:08] 2026-01-21 07:31:06,590 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-21 09:32:08] 2026-01-21 07:31:07,490 | INFO     | time since job start (3317s) is within the limit (349056.0s)
[2026-01-21 09:32:08] 2026-01-21 07:31:08,006 | INFO     | monitor loop #257: job 0:6976709659 is in state 'finished'
[2026-01-21 09:32:08] 2026-01-21 07:31:08,007 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-21 09:32:08] 2026-01-21 07:31:08,894 | INFO     | job 6976709659 has state=finished
[2026-01-21 09:32:08] 2026-01-21 07:31:08,894 | INFO     | preparing for final server update for job 6976709659 in state='finished'
[2026-01-21 09:32:08] 2026-01-21 07:31:08,894 | INFO     | reading metadata from: /home/ek/BOINC/slots/1/PanDA_Pilot-6976709659/jobReport.json
[2026-01-21 09:32:08] 2026-01-21 07:31:08,895 | INFO     | added worker_node to metadata from /home/ek/BOINC/slots/1/workernode_map.json
[2026-01-21 09:32:08] 2026-01-21 07:31:08,896 | INFO     | this job has now completed (state=finished)
[2026-01-21 09:32:08] 2026-01-21 07:31:08,896 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-21 09:32:08] 2026-01-21 07:31:08,896 | INFO     | log transfer has been attempted: DONE
[2026-01-21 09:32:08] 2026-01-21 07:31:08,896 | INFO     | job 6976709659 has finished - writing final server update
[2026-01-21 09:32:08] 2026-01-21 07:31:08,896 | INFO     | total number of processed events: 400 (read)
[2026-01-21 09:32:08] 2026-01-21 07:31:08,898 | INFO     | using path: /home/ek/BOINC/slots/1/PanDA_Pilot-6976709659/memory_monitor_summary.json (trf name=prmon)
[2026-01-21 09:32:08] 2026-01-21 07:31:08,898 | INFO     | extracted standard info from prmon json
[2026-01-21 09:32:08] 2026-01-21 07:31:08,898 | INFO     | extracted standard memory fields from prmon json
[2026-01-21 09:32:08] 2026-01-21 07:31:08,898 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-21 09:32:08] 2026-01-21 07:31:08,898 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-21 09:32:08] 2026-01-21 07:31:08,898 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-21 09:32:08] 2026-01-21 07:31:08,899 | INFO     | fitting pss+swap vs Time
[2026-01-21 09:32:08] 2026-01-21 07:31:08,899 | INFO     | sum of square deviations: 34277852.0
[2026-01-21 09:32:08] 2026-01-21 07:31:08,899 | INFO     | sum of deviations: 305033794.0
[2026-01-21 09:32:08] 2026-01-21 07:31:08,899 | INFO     | mean x: 1768979105.5
[2026-01-21 09:32:08] 2026-01-21 07:31:08,899 | INFO     | mean y: 2803477.0833333335
[2026-01-21 09:32:08] 2026-01-21 07:31:08,899 | INFO     | intersect: -15739093303.8874
[2026-01-21 09:32:08] 2026-01-21 07:31:08,899 | INFO     | chi2: 7.76383886793508e-05
[2026-01-21 09:32:08] 2026-01-21 07:31:08,899 | INFO     | current memory leak: 8.90 B/s (using 48 data points, chi2=0.00)
[2026-01-21 09:32:08] 2026-01-21 07:31:08,899 | INFO     | could have reported an average CPU frequency of 3861 MHz (5 samples)
[2026-01-21 09:32:08] 2026-01-21 07:31:08,900 | INFO     | ..............................
[2026-01-21 09:32:08] 2026-01-21 07:31:08,900 | INFO     | . Timing measurements:
[2026-01-21 09:32:08] 2026-01-21 07:31:08,900 | INFO     | . get job = 0 s
[2026-01-21 09:32:08] 2026-01-21 07:31:08,900 | INFO     | . initial setup = 3 s
[2026-01-21 09:32:08] 2026-01-21 07:31:08,900 | INFO     | . payload setup = 2 s
[2026-01-21 09:32:08] 2026-01-21 07:31:08,900 | INFO     | . stage-in = 0 s
[2026-01-21 09:32:08] 2026-01-21 07:31:08,900 | INFO     | . payload execution = 3298 s
[2026-01-21 09:32:08] 2026-01-21 07:31:08,900 | INFO     | . stage-out = 0 s
[2026-01-21 09:32:08] 2026-01-21 07:31:08,900 | INFO     | . log creation = 0 s
[2026-01-21 09:32:08] 2026-01-21 07:31:08,900 | INFO     | ..............................
[2026-01-21 09:32:08] 2026-01-21 07:31:08,930 | INFO     | 
[2026-01-21 09:32:08] 2026-01-21 07:31:08,930 | INFO     | job summary report
[2026-01-21 09:32:08] 2026-01-21 07:31:08,930 | INFO     | --------------------------------------------------
[2026-01-21 09:32:08] 2026-01-21 07:31:08,930 | INFO     | PanDA job id: 6976709659
[2026-01-21 09:32:08] 2026-01-21 07:31:08,930 | INFO     | task id: 48298321
[2026-01-21 09:32:08] 2026-01-21 07:31:08,930 | INFO     | errors: (none)
[2026-01-21 09:32:08] 2026-01-21 07:31:08,930 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-21 09:32:08] 2026-01-21 07:31:08,931 | INFO     | pilot state: finished 
[2026-01-21 09:32:08] 2026-01-21 07:31:08,931 | INFO     | transexitcode: 0
[2026-01-21 09:32:08] 2026-01-21 07:31:08,931 | INFO     | exeerrorcode: 0
[2026-01-21 09:32:08] 2026-01-21 07:31:08,931 | INFO     | exeerrordiag: 
[2026-01-21 09:32:08] 2026-01-21 07:31:08,931 | INFO     | exitcode: 0
[2026-01-21 09:32:08] 2026-01-21 07:31:08,931 | INFO     | exitmsg: OK
[2026-01-21 09:32:08] 2026-01-21 07:31:08,931 | INFO     | cpuconsumptiontime: 12543 s
[2026-01-21 09:32:08] 2026-01-21 07:31:08,931 | INFO     | nevents: 400
[2026-01-21 09:32:08] 2026-01-21 07:31:08,931 | INFO     | neventsw: 0
[2026-01-21 09:32:08] 2026-01-21 07:31:08,931 | INFO     | pid: 1503650
[2026-01-21 09:32:08] 2026-01-21 07:31:08,931 | INFO     | pgrp: 1503650
[2026-01-21 09:32:08] 2026-01-21 07:31:08,931 | INFO     | corecount: 4
[2026-01-21 09:32:08] 2026-01-21 07:31:08,931 | INFO     | event service: False
[2026-01-21 09:32:08] 2026-01-21 07:31:08,931 | INFO     | sizes: {0: 2284386, 10: 2284386, 3304: 2310120, 3305: 2319118, 3306: 2319174, 3308: 2319400}
[2026-01-21 09:32:08] 2026-01-21 07:31:08,931 | INFO     | --------------------------------------------------
[2026-01-21 09:32:08] 2026-01-21 07:31:08,931 | INFO     | 
[2026-01-21 09:32:08] 2026-01-21 07:31:08,931 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/1
[2026-01-21 09:32:08] 2026-01-21 07:31:08,942 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-21 09:32:08] 2026-01-21 07:31:08,942 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-21 09:32:08] 2026-01-21 07:31:08,942 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-21 09:32:08] 2026-01-21 07:31:08,942 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-21 09:32:08] 2026-01-21 07:31:08,942 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-21 09:32:08] 2026-01-21 07:31:08,942 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-21 09:32:08] 2026-01-21 07:31:08,942 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-21 09:32:08] 2026-01-21 07:31:08,942 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-21 09:32:08] 2026-01-21 07:31:08,942 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-21 09:32:08] 2026-01-21 07:31:08,942 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-21 09:32:08] 2026-01-21 07:31:08,942 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-21 09:32:08] 2026-01-21 07:31:08,942 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-21 09:32:08] 2026-01-21 07:31:08,942 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-21 09:32:08] 2026-01-21 07:31:08,942 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-21 09:32:08] 2026-01-21 07:31:08,942 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-21 09:32:08] 2026-01-21 07:31:08,942 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-21 09:32:08] 2026-01-21 07:31:08,942 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-21 09:32:08] 2026-01-21 07:31:08,942 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-21 09:32:08] 2026-01-21 07:31:08,942 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-21 09:32:08] 2026-01-21 07:31:08,942 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-21 09:32:08] 2026-01-21 07:31:08,942 | INFO     | job 6976709659 has completed (purged errors)
[2026-01-21 09:32:08] 2026-01-21 07:31:08,943 | INFO     | overall cleanup function is called
[2026-01-21 09:32:08] 2026-01-21 07:31:09,948 | INFO     | --- collectZombieJob: --- 10, [1503650]
[2026-01-21 09:32:08] 2026-01-21 07:31:09,948 | INFO     | zombie collector waiting for pid 1503650
[2026-01-21 09:32:08] 2026-01-21 07:31:09,948 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-21 09:32:08] 2026-01-21 07:31:09,948 | INFO     | collected zombie processes
[2026-01-21 09:32:08] 2026-01-21 07:31:09,948 | INFO     | will attempt to kill all subprocesses of pid=1503650
[2026-01-21 09:32:08] 2026-01-21 07:31:10,037 | INFO     | process IDs to be killed: [1503650] (in reverse order)
[2026-01-21 09:32:08] 2026-01-21 07:31:10,066 | WARNING  | found no corresponding commands to process id(s)
[2026-01-21 09:32:08] 2026-01-21 07:31:10,066 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-21 09:32:08] 2026-01-21 07:31:10,068 | INFO     | did not find any defunct processes belonging to 1503650
[2026-01-21 09:32:08] 2026-01-21 07:31:10,070 | INFO     | did not find any defunct processes belonging to 1503650
[2026-01-21 09:32:08] 2026-01-21 07:31:10,071 | INFO     | ready for new job
[2026-01-21 09:32:08] 2026-01-21 07:31:10,071 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-21 09:32:08] 2026-01-21 07:31:10,071 | INFO     | **************************************
[2026-01-21 09:32:08] 2026-01-21 07:31:10,071 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-21 09:32:08] 2026-01-21 07:31:10,071 | INFO     | **************************************
[2026-01-21 09:32:08] 2026-01-21 07:31:10,071 | INFO     | 
[2026-01-21 09:32:08] 2026-01-21 07:31:10,072 | INFO     | architecture information:
[2026-01-21 09:32:08] 2026-01-21 07:31:10,072 | INFO     | executing command: cat /etc/os-release
[2026-01-21 09:32:08] 2026-01-21 07:31:10,079 | INFO     | cat /etc/os-release:
[2026-01-21 09:32:08] NAME="CentOS Linux"
[2026-01-21 09:32:08] VERSION="7 (Core)"
[2026-01-21 09:32:08] ID="centos"
[2026-01-21 09:32:08] ID_LIKE="rhel fedora"
[2026-01-21 09:32:08] VERSION_ID="7"
[2026-01-21 09:32:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-21 09:32:08] ANSI_COLOR="0;31"
[2026-01-21 09:32:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-21 09:32:08] HOME_URL="https://www.centos.org/"
[2026-01-21 09:32:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-21 09:32:08] 
[2026-01-21 09:32:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-21 09:32:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-21 09:32:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-21 09:32:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-21 09:32:08] 
[2026-01-21 09:32:08] 2026-01-21 07:31:10,079 | INFO     | **************************************
[2026-01-21 09:32:08] 2026-01-21 07:31:10,582 | INFO     | executing command: df -mP /home/ek/BOINC/slots/1
[2026-01-21 09:32:08] 2026-01-21 07:31:10,588 | INFO     | sufficient remaining disk space (73583820800 B)
[2026-01-21 09:32:08] 2026-01-21 07:31:10,588 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-21 09:32:08] 2026-01-21 07:31:10,588 | INFO     | current server update state: UPDATING_FINAL
[2026-01-21 09:32:08] 2026-01-21 07:31:10,588 | INFO     | update_server=False
[2026-01-21 09:32:08] 2026-01-21 07:31:10,588 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-21 09:32:08] 2026-01-21 07:31:10,588 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-21 09:32:08] 2026-01-21 07:31:11,020 | INFO     | all data control threads have been joined
[2026-01-21 09:32:08] 2026-01-21 07:31:11,306 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-21 09:32:08] 2026-01-21 07:31:11,514 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-21 09:32:08] 2026-01-21 07:31:11,515 | INFO     | aborting loop
[2026-01-21 09:32:08] 2026-01-21 07:31:11,593 | INFO     | [job] retrieve thread has finished
[2026-01-21 09:32:08] 2026-01-21 07:31:11,593 | INFO     | [job] queue monitor thread has finished
[2026-01-21 09:32:08] 2026-01-21 07:31:11,865 | INFO     | all payload control threads have been joined
[2026-01-21 09:32:08] 2026-01-21 07:31:11,919 | INFO     | all job control threads have been joined
[2026-01-21 09:32:08] 2026-01-21 07:31:12,025 | INFO     | [data] control thread has finished
[2026-01-21 09:32:08] 2026-01-21 07:31:12,170 | INFO     | [job] validate thread has finished
[2026-01-21 09:32:08] 2026-01-21 07:31:12,262 | INFO     | [job] create_data_payload thread has finished
[2026-01-21 09:32:08] 2026-01-21 07:31:12,317 | INFO     | [payload] validate_pre thread has finished
[2026-01-21 09:32:08] 2026-01-21 07:31:12,430 | INFO     | [data] copytool_in thread has finished
[2026-01-21 09:32:08] 2026-01-21 07:31:12,431 | INFO     | [payload] failed_post thread has finished
[2026-01-21 09:32:08] 2026-01-21 07:31:12,469 | INFO     | [payload] execute_payloads thread has finished
[2026-01-21 09:32:08] 2026-01-21 07:31:12,520 | INFO     | [job] job monitor thread has finished
[2026-01-21 09:32:08] 2026-01-21 07:31:12,621 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-21 09:32:08] 2026-01-21 07:31:12,870 | INFO     | [payload] control thread has finished
[2026-01-21 09:32:08] 2026-01-21 07:31:12,924 | INFO     | [job] control thread has finished
[2026-01-21 09:32:08] 2026-01-21 07:31:12,948 | INFO     | [payload] validate_post thread has finished
[2026-01-21 09:32:08] 2026-01-21 07:31:13,312 | INFO     | [data] copytool_out thread has finished
[2026-01-21 09:32:08] 2026-01-21 07:31:16,626 | INFO     | [data] queue_monitor thread has finished
[2026-01-21 09:32:08] 2026-01-21 07:31:21,087 | INFO     | job.realtimelogging is not enabled
[2026-01-21 09:32:08] 2026-01-21 07:31:22,092 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-21 09:32:08] 2026-01-21 07:31:40,645 | INFO     | PID=1499029 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-21 09:32:08] 2026-01-21 07:31:40,646 | INFO     | found 0 job(s) in 20 queues
[2026-01-21 09:32:08] 2026-01-21 07:31:40,646 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-21 09:32:08] 2026-01-21 07:31:40,646 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-21 09:32:08] 2026-01-21 07:31:55,100 | INFO     | [monitor] cgroup control has ended
[2026-01-21 09:32:08] 2026-01-21 07:31:56,161 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140342031304512)>', '<ExcThread(monitor, started 140341411837696)>']
[2026-01-21 09:32:08] 2026-01-21 07:31:56,731 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-21 09:32:08] 2026-01-21 07:31:56,736 | INFO     | [monitor] control thread has ended
[2026-01-21 09:32:08] 2026-01-21 07:32:01,186 | INFO     | all workflow threads have been joined
[2026-01-21 09:32:08] 2026-01-21 07:32:01,187 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-21 09:32:08] 2026-01-21 07:32:01,187 | INFO     | traces error code: 0
[2026-01-21 09:32:08] 2026-01-21 07:32:01,187 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-21 09:32:08] 2026-01-21 07:32:08,078 [wrapper] ==== pilot stdout END ====
[2026-01-21 09:32:08] 2026-01-21 07:32:08,080 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-21 09:32:08] 2026-01-21 07:32:08,082 [wrapper] pilotpid: 1499029
[2026-01-21 09:32:08] 2026-01-21 07:32:08,083 [wrapper] Pilot exit status: 0
[2026-01-21 09:32:08] 2026-01-21 07:32:08,088 [wrapper] pandaids: 6976709659
[2026-01-21 09:32:08] 2026-01-21 07:32:08,116 [wrapper] cleanup supervisor_pilot 1538194 1499030
[2026-01-21 09:32:08] 2026-01-21 07:32:08,118 [wrapper] Test setup, not cleaning
[2026-01-21 09:32:08] 2026-01-21 07:32:08,119 [wrapper] apfmon messages muted
[2026-01-21 09:32:08] 2026-01-21 07:32:08,120 [wrapper] ==== wrapper stdout END ====
[2026-01-21 09:32:08] 2026-01-21 07:32:08,122 [wrapper] ==== wrapper stderr END ====
[2026-01-21 09:32:08]  *** Error codes and diagnostics ***
[2026-01-21 09:32:08]     "exeErrorCode": 0,
[2026-01-21 09:32:08]     "exeErrorDiag": "",
[2026-01-21 09:32:08]     "pilotErrorCode": 0,
[2026-01-21 09:32:08]     "pilotErrorDiag": "",
[2026-01-21 09:32:08]  *** Listing of results directory ***
[2026-01-21 09:32:08] total 425636
[2026-01-21 09:32:08] -rw-r--r-- 1 ek ek      5111 Jan 20 20:02 queuedata.json
[2026-01-21 09:32:08] -rw-r--r-- 1 ek ek    584422 Jan 20 20:02 pilot3.tar.gz
[2026-01-21 09:32:08] -rwx------ 1 ek ek     36322 Jan 20 20:03 runpilot2-wrapper.sh
[2026-01-21 09:32:08] -rw-rw-r-- 1 ek ek       100 Jan 21 08:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-21 09:32:08] -rwxr-xr-x 1 ek ek      7986 Jan 21 08:35 run_atlas
[2026-01-21 09:32:08] -rw-rw-r-- 1 ek ek       105 Jan 21 08:35 job.xml
[2026-01-21 09:32:08] -rw-r--r-- 2 ek ek 259163799 Jan 21 08:35 EVNT.48298318._000015.pool.root.1
[2026-01-21 09:32:08] drwxrwx--x 2 ek ek      4096 Jan 21 08:35 shared
[2026-01-21 09:32:08] -rw-r--r-- 2 ek ek    597785 Jan 21 08:35 input.tar.gz
[2026-01-21 09:32:08] -rw-r--r-- 2 ek ek     15845 Jan 21 08:35 start_atlas.sh
[2026-01-21 09:32:08] -rw-rw-r-- 1 ek ek         0 Jan 21 08:35 boinc_setup_complete
[2026-01-21 09:32:08] -rw-rw-r-- 1 ek ek      9841 Jan 21 08:35 init_data.xml
[2026-01-21 09:32:08] -rw-rw-r-- 1 ek ek         0 Jan 21 08:35 boinc_lockfile
[2026-01-21 09:32:08] -rw-rw-r-- 1 ek ek      2632 Jan 21 08:35 pandaJob.out
[2026-01-21 09:32:08] -rw------- 1 ek ek        50 Jan 21 08:35 setup.sh.local
[2026-01-21 09:32:08] -rw------- 1 ek ek   1000361 Jan 21 08:35 agis_schedconf.cvmfs.json
[2026-01-21 09:32:08] -rw------- 1 ek ek   1516246 Jan 21 08:35 agis_ddmendpoints.agis.ALL.json
[2026-01-21 09:32:08] -rw------- 1 ek ek       432 Jan 21 08:35 workernode_map.json
[2026-01-21 09:32:08] drwx------ 5 ek ek      4096 Jan 21 08:35 pilot3
[2026-01-21 09:32:08] -rw-rw-r-- 1 ek ek       529 Jan 21 09:30 boinc_task_state.xml
[2026-01-21 09:32:08] -rw------- 1 ek ek 171262461 Jan 21 09:30 HITS.48298321._000253.pool.root.1
[2026-01-21 09:32:08] -rw------- 1 ek ek      1032 Jan 21 09:31 memory_monitor_summary.json
[2026-01-21 09:32:08] -rw------- 1 ek ek    234518 Jan 21 09:31 log.48298321._000253.job.log.tgz.1
[2026-01-21 09:32:08] -rw------- 1 ek ek      6324 Jan 21 09:31 heartbeat.json
[2026-01-21 09:32:08] -rw------- 1 ek ek        95 Jan 21 09:31 pilot_heartbeat.json
[2026-01-21 09:32:08] -rw-rw-r-- 1 ek ek      8192 Jan 21 09:31 boinc_mmap_file
[2026-01-21 09:32:08] -rw-rw-r-- 1 ek ek        27 Jan 21 09:31 wrapper_checkpoint.txt
[2026-01-21 09:32:08] -rw------- 1 ek ek      4816 Jan 21 09:32 pilotlog.txt
[2026-01-21 09:32:08] -rw------- 1 ek ek    501849 Jan 21 09:32 log.48298321._000253.job.log.1
[2026-01-21 09:32:08] -rw------- 1 ek ek       357 Jan 21 09:32 output.list
[2026-01-21 09:32:08] -rw-rw-r-- 1 ek ek       620 Jan 21 09:32 runtime_log
[2026-01-21 09:32:08] -rw------- 1 ek ek    757760 Jan 21 09:32 result.tar.gz
[2026-01-21 09:32:08] -rw------- 1 ek ek       663 Jan 21 09:32 TP1KDmQFV28nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmH3vKDmOUPYlm.diag
[2026-01-21 09:32:08] -rw-rw-r-- 1 ek ek      9501 Jan 21 09:32 runtime_log.err
[2026-01-21 09:32:08] -rw-rw-r-- 1 ek ek     20940 Jan 21 09:32 stderr.txt
[2026-01-21 09:32:08] HITS file was successfully produced:
[2026-01-21 09:32:08] -rw------- 1 ek ek 171262461 Jan 21 09:30 shared/HITS.pool.root.1
[2026-01-21 09:32:08]  *** Contents of shared directory: ***
[2026-01-21 09:32:08] total 421692
[2026-01-21 09:32:08] -rw-r--r-- 2 ek ek 259163799 Jan 21 08:35 ATLAS.root_0
[2026-01-21 09:32:08] -rw-r--r-- 2 ek ek    597785 Jan 21 08:35 input.tar.gz
[2026-01-21 09:32:08] -rw-r--r-- 2 ek ek     15845 Jan 21 08:35 start_atlas.sh
[2026-01-21 09:32:08] -rw------- 1 ek ek 171262461 Jan 21 09:30 HITS.pool.root.1
[2026-01-21 09:32:08] -rw------- 1 ek ek    757760 Jan 21 09:32 result.tar.gz
09:32:09 (1495021): run_atlas exited; CPU time 12573.737617
09:32:09 (1495021): called boinc_finish(0)

</stderr_txt>
]]>

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