Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
21:26:51 (893781): wrapper (7.7.26015): starting
21:26:51 (893781): wrapper: running run_atlas (--nthreads 4)
[2026-01-20 21:26:51] Arguments: --nthreads 4
[2026-01-20 21:26:51] Threads: 4
[2026-01-20 21:26:51] Checking for CVMFS
[2026-01-20 21:26:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-20 21:26:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-20 21:26:51] Running cvmfs_config stat atlas.cern.ch
[2026-01-20 21:26:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-20 21:26:52] 2.13.3.0 80730 1207 46752 155358 2 50 18285794 33554433 0 130560 0 39423 99.873 41171 222 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2026-01-20 21:26:52] CVMFS is ok
[2026-01-20 21:26:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-20 21:26:52] Checking for apptainer binary...
[2026-01-20 21:26:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-20 21:26:52] Running /usr/bin/apptainer --version
[2026-01-20 21:26:52] apptainer version 1.4.5
[2026-01-20 21:26:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-20 21:26:52] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2026-01-20 21:26:52] apptainer works
[2026-01-20 21:26:52] Set ATHENA_PROC_NUMBER=4
[2026-01-20 21:26:52] Set ATHENA_CORE_NUMBER=4
[2026-01-20 21:26:52] Starting ATLAS job with PandaID=6976712385
[2026-01-20 21:26:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-20 22:21:10]  *** The last 200 lines of the pilot log: ***
[2026-01-20 22:21:10]  is_altstaged=None
[2026-01-20 22:21:10]  is_tar=False
[2026-01-20 22:21:10]  lfn=log.48299581._000041.job.log.tgz.1
[2026-01-20 22:21:10]  mtime=0
[2026-01-20 22:21:10]  protocol_id=None
[2026-01-20 22:21:10]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-20 22:21:10]  replicas=None
[2026-01-20 22:21:10]  scope=mc23_13p6TeV
[2026-01-20 22:21:10]  status=None
[2026-01-20 22:21:10]  status_code=0
[2026-01-20 22:21:10]  storage_token=
[2026-01-20 22:21:10]  surl=/home/ek/BOINC/slots/1/PanDA_Pilot-6976712385/log.48299581._000041.job.log.tgz.1
[2026-01-20 22:21:10]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/29/17/log.48299581._000041.job.log.tgz.1
[2026-01-20 22:21:10]  workdir=None
[2026-01-20 22:21:10] ]
[2026-01-20 22:21:10] 2026-01-20 20:20:27,451 | INFO     | transferring file log.48299581._000041.job.log.tgz.1 from /home/ek/BOINC/slots/1/PanDA_Pilot-6976712385/log.48299581._000041.job.log.tgz.1 to /home/ek/BOINC/slots/
[2026-01-20 22:21:10] 2026-01-20 20:20:27,451 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/1/PanDA_Pilot-6976712385/log.48299581._000041.job.log.tgz.1 /home/ek/BOINC/slots/1/log.48299581._000041.job
[2026-01-20 22:21:10] 2026-01-20 20:20:27,461 | INFO     | adding to output.list: log.48299581._000041.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/29/17/log.48299581._000041.job.log.tg
[2026-01-20 22:21:10] 2026-01-20 20:20:27,461 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-20 22:21:10] 2026-01-20 20:20:27,461 | INFO     | summary of transferred files:
[2026-01-20 22:21:10] 2026-01-20 20:20:27,461 | INFO     |  -- lfn=log.48299581._000041.job.log.tgz.1, status_code=0, status=transferred
[2026-01-20 22:21:10] 2026-01-20 20:20:27,461 | INFO     | stage-out finished correctly
[2026-01-20 22:21:10] 2026-01-20 20:20:28,386 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-20 22:21:10] 2026-01-20 20:20:28,611 | INFO     | time since job start (3208s) is within the limit (349056.0s)
[2026-01-20 22:21:10] 2026-01-20 20:20:30,616 | INFO     | time since job start (3210s) is within the limit (349056.0s)
[2026-01-20 22:21:10] 2026-01-20 20:20:30,638 | INFO     | job 6976712385 has state=finished
[2026-01-20 22:21:10] 2026-01-20 20:20:30,638 | INFO     | preparing for final server update for job 6976712385 in state='finished'
[2026-01-20 22:21:10] 2026-01-20 20:20:31,485 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-01-20 22:21:10] 2026-01-20 20:20:31,485 | INFO     | reading metadata from: /home/ek/BOINC/slots/1/PanDA_Pilot-6976712385/jobReport.json
[2026-01-20 22:21:10] 2026-01-20 20:20:31,486 | INFO     | added worker_node to metadata from /home/ek/BOINC/slots/1/workernode_map.json
[2026-01-20 22:21:10] 2026-01-20 20:20:31,486 | INFO     | this job has now completed (state=finished)
[2026-01-20 22:21:10] 2026-01-20 20:20:31,486 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-20 22:21:10] 2026-01-20 20:20:31,486 | INFO     | log transfer has been attempted: DONE
[2026-01-20 22:21:10] 2026-01-20 20:20:31,486 | INFO     | job 6976712385 has finished - writing final server update
[2026-01-20 22:21:10] 2026-01-20 20:20:31,487 | INFO     | total number of processed events: 400 (read)
[2026-01-20 22:21:10] 2026-01-20 20:20:31,488 | INFO     | using path: /home/ek/BOINC/slots/1/PanDA_Pilot-6976712385/memory_monitor_summary.json (trf name=prmon)
[2026-01-20 22:21:10] 2026-01-20 20:20:31,488 | INFO     | extracted standard info from prmon json
[2026-01-20 22:21:10] 2026-01-20 20:20:31,489 | INFO     | extracted standard memory fields from prmon json
[2026-01-20 22:21:10] 2026-01-20 20:20:31,489 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-20 22:21:10] 2026-01-20 20:20:31,489 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-20 22:21:10] 2026-01-20 20:20:31,489 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-20 22:21:10] 2026-01-20 20:20:31,489 | INFO     | fitting pss+swap vs Time
[2026-01-20 22:21:10] 2026-01-20 20:20:31,489 | INFO     | sum of square deviations: 30168007.5
[2026-01-20 22:21:10] 2026-01-20 20:20:31,489 | INFO     | sum of deviations: -2434027795.0
[2026-01-20 22:21:10] 2026-01-20 20:20:31,489 | INFO     | mean x: 1768938913.5
[2026-01-20 22:21:10] 2026-01-20 20:20:31,489 | INFO     | mean y: 2763128.6086956523
[2026-01-20 22:21:10] 2026-01-20 20:20:31,489 | INFO     | intersect: 142725032178.56506
[2026-01-20 22:21:10] 2026-01-20 20:20:31,489 | INFO     | chi2: 0.08256762530061455
[2026-01-20 22:21:10] 2026-01-20 20:20:31,490 | INFO     | current memory leak: -80.68 B/s (using 46 data points, chi2=0.08)
[2026-01-20 22:21:10] 2026-01-20 20:20:31,490 | INFO     | could have reported an average CPU frequency of 4191 MHz (5 samples)
[2026-01-20 22:21:10] 2026-01-20 20:20:31,490 | INFO     | ..............................
[2026-01-20 22:21:10] 2026-01-20 20:20:31,490 | INFO     | . Timing measurements:
[2026-01-20 22:21:10] 2026-01-20 20:20:31,490 | INFO     | . get job = 0 s
[2026-01-20 22:21:10] 2026-01-20 20:20:31,490 | INFO     | . initial setup = 3 s
[2026-01-20 22:21:10] 2026-01-20 20:20:31,490 | INFO     | . payload setup = 2 s
[2026-01-20 22:21:10] 2026-01-20 20:20:31,490 | INFO     | . stage-in = 0 s
[2026-01-20 22:21:10] 2026-01-20 20:20:31,490 | INFO     | . payload execution = 3192 s
[2026-01-20 22:21:10] 2026-01-20 20:20:31,490 | INFO     | . stage-out = 0 s
[2026-01-20 22:21:10] 2026-01-20 20:20:31,490 | INFO     | . log creation = 0 s
[2026-01-20 22:21:10] 2026-01-20 20:20:31,490 | INFO     | ..............................
[2026-01-20 22:21:10] 2026-01-20 20:20:31,519 | INFO     | 
[2026-01-20 22:21:10] 2026-01-20 20:20:31,519 | INFO     | job summary report
[2026-01-20 22:21:10] 2026-01-20 20:20:31,519 | INFO     | --------------------------------------------------
[2026-01-20 22:21:10] 2026-01-20 20:20:31,519 | INFO     | PanDA job id: 6976712385
[2026-01-20 22:21:10] 2026-01-20 20:20:31,519 | INFO     | task id: 48299581
[2026-01-20 22:21:10] 2026-01-20 20:20:31,519 | INFO     | errors: (none)
[2026-01-20 22:21:10] 2026-01-20 20:20:31,519 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-20 22:21:10] 2026-01-20 20:20:31,519 | INFO     | pilot state: finished 
[2026-01-20 22:21:10] 2026-01-20 20:20:31,519 | INFO     | transexitcode: 0
[2026-01-20 22:21:10] 2026-01-20 20:20:31,519 | INFO     | exeerrorcode: 0
[2026-01-20 22:21:10] 2026-01-20 20:20:31,519 | INFO     | exeerrordiag: 
[2026-01-20 22:21:10] 2026-01-20 20:20:31,519 | INFO     | exitcode: 0
[2026-01-20 22:21:10] 2026-01-20 20:20:31,519 | INFO     | exitmsg: OK
[2026-01-20 22:21:10] 2026-01-20 20:20:31,519 | INFO     | cpuconsumptiontime: 12077 s
[2026-01-20 22:21:10] 2026-01-20 20:20:31,519 | INFO     | nevents: 400
[2026-01-20 22:21:10] 2026-01-20 20:20:31,519 | INFO     | neventsw: 0
[2026-01-20 22:21:10] 2026-01-20 20:20:31,519 | INFO     | pid: 902246
[2026-01-20 22:21:10] 2026-01-20 20:20:31,519 | INFO     | pgrp: 902246
[2026-01-20 22:21:10] 2026-01-20 20:20:31,519 | INFO     | corecount: 4
[2026-01-20 22:21:10] 2026-01-20 20:20:31,519 | INFO     | event service: False
[2026-01-20 22:21:10] 2026-01-20 20:20:31,519 | INFO     | sizes: {0: 2283893, 1: 2284410, 11: 2284410, 3195: 2310017, 3196: 2319015, 3197: 2319071, 3200: 2319425}
[2026-01-20 22:21:10] 2026-01-20 20:20:31,519 | INFO     | --------------------------------------------------
[2026-01-20 22:21:10] 2026-01-20 20:20:31,519 | INFO     | 
[2026-01-20 22:21:10] 2026-01-20 20:20:31,519 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/1
[2026-01-20 22:21:10] 2026-01-20 20:20:31,529 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-20 22:21:10] 2026-01-20 20:20:31,529 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-20 22:21:10] 2026-01-20 20:20:31,529 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-20 22:21:10] 2026-01-20 20:20:31,529 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-20 22:21:10] 2026-01-20 20:20:31,529 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-20 22:21:10] 2026-01-20 20:20:31,529 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-20 22:21:10] 2026-01-20 20:20:31,529 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-20 22:21:10] 2026-01-20 20:20:31,529 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-20 22:21:10] 2026-01-20 20:20:31,529 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-20 22:21:10] 2026-01-20 20:20:31,529 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-20 22:21:10] 2026-01-20 20:20:31,529 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-20 22:21:10] 2026-01-20 20:20:31,529 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-20 22:21:10] 2026-01-20 20:20:31,530 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-20 22:21:10] 2026-01-20 20:20:31,530 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-20 22:21:10] 2026-01-20 20:20:31,530 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-20 22:21:10] 2026-01-20 20:20:31,530 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-20 22:21:10] 2026-01-20 20:20:31,530 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-20 22:21:10] 2026-01-20 20:20:31,530 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-20 22:21:10] 2026-01-20 20:20:31,530 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-20 22:21:10] 2026-01-20 20:20:31,530 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-20 22:21:10] 2026-01-20 20:20:31,530 | INFO     | job 6976712385 has completed (purged errors)
[2026-01-20 22:21:10] 2026-01-20 20:20:31,530 | INFO     | overall cleanup function is called
[2026-01-20 22:21:10] 2026-01-20 20:20:32,536 | INFO     | --- collectZombieJob: --- 10, [902246]
[2026-01-20 22:21:10] 2026-01-20 20:20:32,536 | INFO     | zombie collector waiting for pid 902246
[2026-01-20 22:21:10] 2026-01-20 20:20:32,536 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-20 22:21:10] 2026-01-20 20:20:32,537 | INFO     | collected zombie processes
[2026-01-20 22:21:10] 2026-01-20 20:20:32,537 | INFO     | will attempt to kill all subprocesses of pid=902246
[2026-01-20 22:21:10] 2026-01-20 20:20:32,629 | INFO     | process IDs to be killed: [902246] (in reverse order)
[2026-01-20 22:21:10] 2026-01-20 20:20:32,661 | WARNING  | found no corresponding commands to process id(s)
[2026-01-20 22:21:10] 2026-01-20 20:20:32,662 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-20 22:21:10] 2026-01-20 20:20:32,664 | INFO     | did not find any defunct processes belonging to 902246
[2026-01-20 22:21:10] 2026-01-20 20:20:32,666 | INFO     | did not find any defunct processes belonging to 902246
[2026-01-20 22:21:10] 2026-01-20 20:20:32,666 | INFO     | ready for new job
[2026-01-20 22:21:10] 2026-01-20 20:20:32,666 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-20 22:21:10] 2026-01-20 20:20:32,667 | INFO     | **************************************
[2026-01-20 22:21:10] 2026-01-20 20:20:32,667 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-20 22:21:10] 2026-01-20 20:20:32,667 | INFO     | **************************************
[2026-01-20 22:21:10] 2026-01-20 20:20:32,667 | INFO     | 
[2026-01-20 22:21:10] 2026-01-20 20:20:32,667 | INFO     | architecture information:
[2026-01-20 22:21:10] 2026-01-20 20:20:32,668 | INFO     | executing command: cat /etc/os-release
[2026-01-20 22:21:10] 2026-01-20 20:20:32,675 | INFO     | cat /etc/os-release:
[2026-01-20 22:21:10] NAME="CentOS Linux"
[2026-01-20 22:21:10] VERSION="7 (Core)"
[2026-01-20 22:21:10] ID="centos"
[2026-01-20 22:21:10] ID_LIKE="rhel fedora"
[2026-01-20 22:21:10] VERSION_ID="7"
[2026-01-20 22:21:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-20 22:21:10] ANSI_COLOR="0;31"
[2026-01-20 22:21:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-20 22:21:10] HOME_URL="https://www.centos.org/"
[2026-01-20 22:21:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-20 22:21:10] 
[2026-01-20 22:21:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-20 22:21:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-20 22:21:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-20 22:21:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-20 22:21:10] 
[2026-01-20 22:21:10] 2026-01-20 20:20:32,675 | INFO     | **************************************
[2026-01-20 22:21:10] 2026-01-20 20:20:33,177 | INFO     | executing command: df -mP /home/ek/BOINC/slots/1
[2026-01-20 22:21:10] 2026-01-20 20:20:33,183 | INFO     | sufficient remaining disk space (74091331584 B)
[2026-01-20 22:21:10] 2026-01-20 20:20:33,183 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-20 22:21:10] 2026-01-20 20:20:33,183 | INFO     | current server update state: UPDATING_FINAL
[2026-01-20 22:21:10] 2026-01-20 20:20:33,183 | INFO     | update_server=False
[2026-01-20 22:21:10] 2026-01-20 20:20:33,183 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-20 22:21:10] 2026-01-20 20:20:33,183 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-20 22:21:10] 2026-01-20 20:20:33,183 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-20 22:21:10] 2026-01-20 20:20:33,390 | INFO     | all payload control threads have been joined
[2026-01-20 22:21:10] 2026-01-20 20:20:33,642 | WARNING  | process 902246 can no longer be monitored (due to stat problems) - aborting
[2026-01-20 22:21:10] 2026-01-20 20:20:33,702 | INFO     | using path: /home/ek/BOINC/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-01-20 22:21:10] 2026-01-20 20:20:33,761 | INFO     | all data control threads have been joined
[2026-01-20 22:21:10] 2026-01-20 20:20:33,788 | INFO     | number of running child processes to parent process 902246: 1
[2026-01-20 22:21:10] 2026-01-20 20:20:33,788 | INFO     | maximum number of monitored processes: 6
[2026-01-20 22:21:10] 2026-01-20 20:20:33,788 | INFO     | aborting job monitoring since job object (job id=6976712385) has expired
[2026-01-20 22:21:10] 2026-01-20 20:20:33,788 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-20 22:21:10] 2026-01-20 20:20:33,788 | INFO     | will abort loop
[2026-01-20 22:21:10] 2026-01-20 20:20:34,186 | INFO     | [job] retrieve thread has finished
[2026-01-20 22:21:10] 2026-01-20 20:20:34,188 | INFO     | [job] queue monitor thread has finished
[2026-01-20 22:21:10] 2026-01-20 20:20:34,389 | INFO     | all job control threads have been joined
[2026-01-20 22:21:10] 2026-01-20 20:20:34,395 | INFO     | [payload] control thread has finished
[2026-01-20 22:21:10] 2026-01-20 20:20:34,421 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-20 22:21:10] 2026-01-20 20:20:34,766 | INFO     | [data] control thread has finished
[2026-01-20 22:21:10] 2026-01-20 20:20:34,793 | INFO     | [job] job monitor thread has finished
[2026-01-20 22:21:10] 2026-01-20 20:20:34,868 | INFO     | [payload] failed_post thread has finished
[2026-01-20 22:21:10] 2026-01-20 20:20:34,898 | INFO     | [payload] execute_payloads thread has finished
[2026-01-20 22:21:10] 2026-01-20 20:20:35,188 | INFO     | [data] copytool_out thread has finished
[2026-01-20 22:21:10] 2026-01-20 20:20:35,328 | INFO     | [job] validate thread has finished
[2026-01-20 22:21:10] 2026-01-20 20:20:35,394 | INFO     | [job] control thread has finished
[2026-01-20 22:21:10] 2026-01-20 20:20:35,426 | INFO     | [payload] validate_post thread has finished
[2026-01-20 22:21:10] 2026-01-20 20:20:35,430 | INFO     | [job] create_data_payload thread has finished
[2026-01-20 22:21:10] 2026-01-20 20:20:35,483 | INFO     | [payload] validate_pre thread has finished
[2026-01-20 22:21:10] 2026-01-20 20:20:35,600 | INFO     | [data] copytool_in thread has finished
[2026-01-20 22:21:10] 2026-01-20 20:20:38,426 | INFO     | [data] queue_monitor thread has finished
[2026-01-20 22:21:10] 2026-01-20 20:20:43,485 | INFO     | job.realtimelogging is not enabled
[2026-01-20 22:21:10] 2026-01-20 20:20:44,490 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-20 22:21:10] 2026-01-20 20:21:03,772 | INFO     | PID=897611 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-20 22:21:10] 2026-01-20 20:21:03,772 | INFO     | found 0 job(s) in 20 queues
[2026-01-20 22:21:10] 2026-01-20 20:21:03,772 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-20 22:21:10] 2026-01-20 20:21:03,772 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-20 22:21:10] 2026-01-20 20:21:04,807 | INFO     | [monitor] cgroup control has ended
[2026-01-20 22:21:10] 2026-01-20 20:21:05,129 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139705300735808)>', '<ExcThread(monitor, started 139704682936064)>']
[2026-01-20 22:21:10] 2026-01-20 20:21:05,783 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-20 22:21:10] 2026-01-20 20:21:05,783 | INFO     | [monitor] control thread has ended
[2026-01-20 22:21:10] 2026-01-20 20:21:10,154 | INFO     | all workflow threads have been joined
[2026-01-20 22:21:10] 2026-01-20 20:21:10,154 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-20 22:21:10] 2026-01-20 20:21:10,154 | INFO     | traces error code: 0
[2026-01-20 22:21:10] 2026-01-20 20:21:10,154 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-20 22:21:10] 2026-01-20 20:21:10,210 [wrapper] ==== pilot stdout END ====
[2026-01-20 22:21:10] 2026-01-20 20:21:10,212 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-20 22:21:10] 2026-01-20 20:21:10,213 [wrapper] pilotpid: 897611
[2026-01-20 22:21:10] 2026-01-20 20:21:10,215 [wrapper] Pilot exit status: 0
[2026-01-20 22:21:10] 2026-01-20 20:21:10,220 [wrapper] pandaids: 6976712385
[2026-01-20 22:21:10] 2026-01-20 20:21:10,241 [wrapper] cleanup supervisor_pilot  936420 897612
[2026-01-20 22:21:10] 2026-01-20 20:21:10,243 [wrapper] Test setup, not cleaning
[2026-01-20 22:21:10] 2026-01-20 20:21:10,244 [wrapper] apfmon messages muted
[2026-01-20 22:21:10] 2026-01-20 20:21:10,245 [wrapper] ==== wrapper stdout END ====
[2026-01-20 22:21:10] 2026-01-20 20:21:10,247 [wrapper] ==== wrapper stderr END ====
[2026-01-20 22:21:10]  *** Error codes and diagnostics ***
[2026-01-20 22:21:10]     "exeErrorCode": 0,
[2026-01-20 22:21:10]     "exeErrorDiag": "",
[2026-01-20 22:21:10]     "pilotErrorCode": 0,
[2026-01-20 22:21:10]     "pilotErrorDiag": "",
[2026-01-20 22:21:10]  *** Listing of results directory ***
[2026-01-20 22:21:10] total 427308
[2026-01-20 22:21:10] -rw-r--r-- 1 ek ek      5111 Jan 20 20:02 queuedata.json
[2026-01-20 22:21:10] -rw-r--r-- 1 ek ek    584422 Jan 20 20:02 pilot3.tar.gz
[2026-01-20 22:21:10] -rwx------ 1 ek ek     36322 Jan 20 20:03 runpilot2-wrapper.sh
[2026-01-20 22:21:10] -rw-rw-r-- 1 ek ek       100 Jan 20 21:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-20 22:21:10] -rwxr-xr-x 1 ek ek      7986 Jan 20 21:26 run_atlas
[2026-01-20 22:21:10] -rw-rw-r-- 1 ek ek       105 Jan 20 21:26 job.xml
[2026-01-20 22:21:10] -rw-r--r-- 2 ek ek 261850414 Jan 20 21:26 EVNT.48299579._000008.pool.root.1
[2026-01-20 22:21:10] drwxrwx--x 2 ek ek      4096 Jan 20 21:26 shared
[2026-01-20 22:21:10] -rw-r--r-- 2 ek ek    597777 Jan 20 21:26 input.tar.gz
[2026-01-20 22:21:10] -rw-r--r-- 2 ek ek     15845 Jan 20 21:26 start_atlas.sh
[2026-01-20 22:21:10] -rw-rw-r-- 1 ek ek         0 Jan 20 21:26 boinc_setup_complete
[2026-01-20 22:21:10] -rw-rw-r-- 1 ek ek      9841 Jan 20 21:26 init_data.xml
[2026-01-20 22:21:10] -rw-rw-r-- 1 ek ek         0 Jan 20 21:26 boinc_lockfile
[2026-01-20 22:21:10] -rw-rw-r-- 1 ek ek      2630 Jan 20 21:26 pandaJob.out
[2026-01-20 22:21:10] -rw------- 1 ek ek        50 Jan 20 21:26 setup.sh.local
[2026-01-20 22:21:10] -rw------- 1 ek ek   1003869 Jan 20 21:26 agis_schedconf.cvmfs.json
[2026-01-20 22:21:10] -rw------- 1 ek ek   1516246 Jan 20 21:26 agis_ddmendpoints.agis.ALL.json
[2026-01-20 22:21:10] -rw------- 1 ek ek       432 Jan 20 21:26 workernode_map.json
[2026-01-20 22:21:10] drwx------ 5 ek ek      4096 Jan 20 21:27 pilot3
[2026-01-20 22:21:10] -rw------- 1 ek ek 170285415 Jan 20 22:20 HITS.48299581._000041.pool.root.1
[2026-01-20 22:21:10] -rw------- 1 ek ek        95 Jan 20 22:20 pilot_heartbeat.json
[2026-01-20 22:21:10] -rw-rw-r-- 1 ek ek       529 Jan 20 22:20 boinc_task_state.xml
[2026-01-20 22:21:10] -rw------- 1 ek ek      1028 Jan 20 22:20 memory_monitor_summary.json
[2026-01-20 22:21:10] -rw------- 1 ek ek    248970 Jan 20 22:20 log.48299581._000041.job.log.tgz.1
[2026-01-20 22:21:10] -rw------- 1 ek ek      6312 Jan 20 22:20 heartbeat.json
[2026-01-20 22:21:10] -rw-rw-r-- 1 ek ek      8192 Jan 20 22:20 boinc_mmap_file
[2026-01-20 22:21:10] -rw-rw-r-- 1 ek ek        27 Jan 20 22:20 wrapper_checkpoint.txt
[2026-01-20 22:21:10] -rw------- 1 ek ek      5334 Jan 20 22:21 pilotlog.txt
[2026-01-20 22:21:10] -rw------- 1 ek ek    487519 Jan 20 22:21 log.48299581._000041.job.log.1
[2026-01-20 22:21:10] -rw------- 1 ek ek       357 Jan 20 22:21 output.list
[2026-01-20 22:21:10] -rw-rw-r-- 1 ek ek       620 Jan 20 22:21 runtime_log
[2026-01-20 22:21:10] -rw------- 1 ek ek    757760 Jan 20 22:21 result.tar.gz
[2026-01-20 22:21:10] -rw-rw-r-- 1 ek ek      9501 Jan 20 22:21 runtime_log.err
[2026-01-20 22:21:10] -rw------- 1 ek ek       659 Jan 20 22:21 CyoLDmQFV28n9Rq4apOajLDm4fhM0noT9bVo0NGKDmuTpKDm32Dwnm.diag
[2026-01-20 22:21:10] -rw-rw-r-- 1 ek ek     21309 Jan 20 22:21 stderr.txt
[2026-01-20 22:21:10] HITS file was successfully produced:
[2026-01-20 22:21:10] -rw------- 1 ek ek 170285415 Jan 20 22:20 shared/HITS.pool.root.1
[2026-01-20 22:21:10]  *** Contents of shared directory: ***
[2026-01-20 22:21:10] total 423360
[2026-01-20 22:21:10] -rw-r--r-- 2 ek ek 261850414 Jan 20 21:26 ATLAS.root_0
[2026-01-20 22:21:10] -rw-r--r-- 2 ek ek    597777 Jan 20 21:26 input.tar.gz
[2026-01-20 22:21:10] -rw-r--r-- 2 ek ek     15845 Jan 20 21:26 start_atlas.sh
[2026-01-20 22:21:10] -rw------- 1 ek ek 170285415 Jan 20 22:20 HITS.pool.root.1
[2026-01-20 22:21:10] -rw------- 1 ek ek    757760 Jan 20 22:21 result.tar.gz
22:21:11 (893781): run_atlas exited; CPU time 12106.767896
22:21:11 (893781): called boinc_finish(0)

</stderr_txt>
]]>

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