Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
18:48:17 (2469081): wrapper (7.7.26015): starting
18:48:17 (2469081): wrapper: running run_atlas (--nthreads 12)
[2026-01-20 18:48:17] Arguments: --nthreads 12
[2026-01-20 18:48:17] Threads: 12
[2026-01-20 18:48:17] Checking for CVMFS
[2026-01-20 18:48:17] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-20 18:48:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-20 18:48:17] Running cvmfs_config stat atlas.cern.ch
[2026-01-20 18:48:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-20 18:48:18] 2.11.0.0 2093919 54 67320 155356 1 253 5081210 6144001 10222 130560 0 950050 99.998 4223 341 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-01-20 18:48:18] CVMFS is ok
[2026-01-20 18:48:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-20 18:48:18] Checking for apptainer binary...
[2026-01-20 18:48:18] apptainer is not installed, using version from CVMFS
[2026-01-20 18:48:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-20 18:48:18] radiat0r
[2026-01-20 18:48:18] apptainer works
[2026-01-20 18:48:18] Set ATHENA_PROC_NUMBER=12
[2026-01-20 18:48:18] Set ATHENA_CORE_NUMBER=12
[2026-01-20 18:48:18] Starting ATLAS job with PandaID=6976471436
[2026-01-20 18:48:18] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/25 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-20 21:09:53]  *** The last 200 lines of the pilot log: ***
[2026-01-20 21:09:53] 2026-01-20 21:08:47,621 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-20 21:09:53] 2026-01-20 21:08:47,621 | INFO     | log transfer has been attempted: DONE
[2026-01-20 21:09:53] 2026-01-20 21:08:47,621 | INFO     | job 6976471436 has finished - writing final server update
[2026-01-20 21:09:53] 2026-01-20 21:08:47,622 | INFO     | total number of processed events: 350 (read)
[2026-01-20 21:09:53] 2026-01-20 21:08:47,712 | INFO     | using path: /var/lib/boinc/slots/25/PanDA_Pilot-6976471436/memory_monitor_summary.json (trf name=prmon)
[2026-01-20 21:09:53] 2026-01-20 21:08:47,712 | INFO     | extracted standard info from prmon json
[2026-01-20 21:09:53] 2026-01-20 21:08:47,713 | INFO     | extracted standard memory fields from prmon json
[2026-01-20 21:09:53] 2026-01-20 21:08:47,713 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-20 21:09:53] 2026-01-20 21:08:47,716 | INFO     | fitting pss+swap vs Time
[2026-01-20 21:09:53] 2026-01-20 21:08:47,717 | INFO     | sum of square deviations: 814869029.4565233
[2026-01-20 21:09:53] 2026-01-20 21:08:47,718 | INFO     | sum of deviations: 38009783263.84781
[2026-01-20 21:09:53] 2026-01-20 21:08:47,718 | INFO     | mean x: 1768939115.4130435
[2026-01-20 21:09:53] 2026-01-20 21:08:47,718 | INFO     | mean y: 3173123.5289855073
[2026-01-20 21:09:53] 2026-01-20 21:08:47,718 | INFO     | intersect: -82509463819.65701
[2026-01-20 21:09:53] 2026-01-20 21:08:47,718 | INFO     | chi2: 4.786248380142752
[2026-01-20 21:09:53] 2026-01-20 21:08:47,718 | INFO     | sum of square deviations: 729501202.6315768
[2026-01-20 21:09:53] 2026-01-20 21:08:47,719 | INFO     | sum of deviations: 76180600864.26317
[2026-01-20 21:09:53] 2026-01-20 21:08:47,719 | INFO     | mean x: 1768938962.9473684
[2026-01-20 21:09:53] 2026-01-20 21:08:47,719 | INFO     | mean y: 3240809.4661654136
[2026-01-20 21:09:53] 2026-01-20 21:08:47,719 | INFO     | intersect: -184724121672.47748
[2026-01-20 21:09:53] 2026-01-20 21:08:47,720 | INFO     | chi2: 2.629753468380428
[2026-01-20 21:09:53] 2026-01-20 21:08:47,720 | INFO     | current chi2=2.629753468380428 (change=45.05605937019937 %)
[2026-01-20 21:09:53] 2026-01-20 21:08:47,720 | INFO     | sum of square deviations: 650287333.71875
[2026-01-20 21:09:53] 2026-01-20 21:08:47,721 | INFO     | sum of deviations: 76729261357.95312
[2026-01-20 21:09:53] 2026-01-20 21:08:47,721 | INFO     | mean x: 1768938810.453125
[2026-01-20 21:09:53] 2026-01-20 21:08:47,721 | INFO     | mean y: 3241583.7421875
[2026-01-20 21:09:53] 2026-01-20 21:08:47,721 | INFO     | intersect: -208718905189.8987
[2026-01-20 21:09:53] 2026-01-20 21:08:47,721 | INFO     | chi2: 2.5255944312096994
[2026-01-20 21:09:53] 2026-01-20 21:08:47,721 | INFO     | current chi2=2.5255944312096994 (change=3.9607909419310037 %)
[2026-01-20 21:09:53] 2026-01-20 21:08:47,721 | INFO     | right removable region: 127
[2026-01-20 21:09:53] 2026-01-20 21:08:47,722 | INFO     | sum of square deviations: 729432517.5187969
[2026-01-20 21:09:53] 2026-01-20 21:08:47,722 | INFO     | sum of deviations: -4788848021.330824
[2026-01-20 21:09:53] 2026-01-20 21:08:47,722 | INFO     | mean x: 1768939267.9398496
[2026-01-20 21:09:53] 2026-01-20 21:08:47,723 | INFO     | mean y: 3248886.4586466164
[2026-01-20 21:09:53] 2026-01-20 21:08:47,723 | INFO     | intersect: 11616634785.326048
[2026-01-20 21:09:53] 2026-01-20 21:08:47,723 | INFO     | chi2: 2.372293292592901
[2026-01-20 21:09:53] 2026-01-20 21:08:47,723 | INFO     | current chi2=2.372293292592901 (change=50.43522391284368 %)
[2026-01-20 21:09:53] 2026-01-20 21:08:47,723 | INFO     | sum of square deviations: 650214867.5
[2026-01-20 21:09:53] 2026-01-20 21:08:47,724 | INFO     | sum of deviations: -12482533108.75
[2026-01-20 21:09:53] 2026-01-20 21:08:47,724 | INFO     | mean x: 1768939420.4375
[2026-01-20 21:09:53] 2026-01-20 21:08:47,724 | INFO     | mean y: 3263617.65625
[2026-01-20 21:09:53] 2026-01-20 21:08:47,724 | INFO     | intersect: 33962568436.203987
[2026-01-20 21:09:53] 2026-01-20 21:08:47,725 | INFO     | chi2: 2.3166634085577162
[2026-01-20 21:09:53] 2026-01-20 21:08:47,725 | INFO     | current chi2=2.3166634085577162 (change=2.3449834052509444 %)
[2026-01-20 21:09:53] 2026-01-20 21:08:47,725 | INFO     | left removable region: 20
[2026-01-20 21:09:53] 2026-01-20 21:08:47,725 | INFO     | sum of square deviations: 379839437.96261716
[2026-01-20 21:09:53] 2026-01-20 21:08:47,725 | INFO     | sum of deviations: 18664545283.98131
[2026-01-20 21:09:53] 2026-01-20 21:08:47,726 | INFO     | mean x: 1768939389.9813085
[2026-01-20 21:09:53] 2026-01-20 21:08:47,726 | INFO     | mean y: 3364719.9906542054
[2026-01-20 21:09:53] 2026-01-20 21:08:47,726 | INFO     | intersect: -86918755652.81224
[2026-01-20 21:09:53] 2026-01-20 21:08:47,726 | INFO     | chi2: 0.0015845067815757102
[2026-01-20 21:09:53] 2026-01-20 21:08:47,726 | INFO     | current memory leak: 49.14 B/s (using 107 data points, chi2=0.00)
[2026-01-20 21:09:53] 2026-01-20 21:08:47,727 | INFO     | could have reported an average CPU frequency of 2276 MHz (8 samples)
[2026-01-20 21:09:53] 2026-01-20 21:08:47,727 | INFO     | ..............................
[2026-01-20 21:09:53] 2026-01-20 21:08:47,727 | INFO     | . Timing measurements:
[2026-01-20 21:09:53] 2026-01-20 21:08:47,727 | INFO     | . get job = 0 s
[2026-01-20 21:09:53] 2026-01-20 21:08:47,727 | INFO     | . initial setup = 6 s
[2026-01-20 21:09:53] 2026-01-20 21:08:47,727 | INFO     | . payload setup = 6 s
[2026-01-20 21:09:53] 2026-01-20 21:08:47,727 | INFO     | . stage-in = 0 s
[2026-01-20 21:09:53] 2026-01-20 21:08:47,727 | INFO     | . payload execution = 8390 s
[2026-01-20 21:09:53] 2026-01-20 21:08:47,727 | INFO     | . stage-out = 0 s
[2026-01-20 21:09:53] 2026-01-20 21:08:47,727 | INFO     | . log creation = 0 s
[2026-01-20 21:09:53] 2026-01-20 21:08:47,728 | INFO     | ..............................
[2026-01-20 21:09:53] 2026-01-20 21:08:48,195 | INFO     | 
[2026-01-20 21:09:53] 2026-01-20 21:08:48,195 | INFO     | job summary report
[2026-01-20 21:09:53] 2026-01-20 21:08:48,195 | INFO     | --------------------------------------------------
[2026-01-20 21:09:53] 2026-01-20 21:08:48,195 | INFO     | PanDA job id: 6976471436
[2026-01-20 21:09:53] 2026-01-20 21:08:48,195 | INFO     | task id: 47961985
[2026-01-20 21:09:53] 2026-01-20 21:08:48,195 | INFO     | errors: (none)
[2026-01-20 21:09:53] 2026-01-20 21:08:48,195 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-20 21:09:53] 2026-01-20 21:08:48,195 | INFO     | pilot state: finished 
[2026-01-20 21:09:53] 2026-01-20 21:08:48,196 | INFO     | transexitcode: 0
[2026-01-20 21:09:53] 2026-01-20 21:08:48,196 | INFO     | exeerrorcode: 0
[2026-01-20 21:09:53] 2026-01-20 21:08:48,196 | INFO     | exeerrordiag: 
[2026-01-20 21:09:53] 2026-01-20 21:08:48,196 | INFO     | exitcode: 0
[2026-01-20 21:09:53] 2026-01-20 21:08:48,196 | INFO     | exitmsg: OK
[2026-01-20 21:09:53] 2026-01-20 21:08:48,196 | INFO     | cpuconsumptiontime: 95175 s
[2026-01-20 21:09:53] 2026-01-20 21:08:48,196 | INFO     | nevents: 350
[2026-01-20 21:09:53] 2026-01-20 21:08:48,196 | INFO     | neventsw: 0
[2026-01-20 21:09:53] 2026-01-20 21:08:48,196 | INFO     | pid: 2487827
[2026-01-20 21:09:53] 2026-01-20 21:08:48,196 | INFO     | pgrp: 2487827
[2026-01-20 21:09:53] 2026-01-20 21:08:48,196 | INFO     | corecount: 12
[2026-01-20 21:09:53] 2026-01-20 21:08:48,196 | INFO     | event service: False
[2026-01-20 21:09:53] 2026-01-20 21:08:48,196 | INFO     | sizes: {0: 2284437, 1: 2284841, 11: 2284841, 8401: 2313948, 8403: 2323190}
[2026-01-20 21:09:53] 2026-01-20 21:08:48,197 | INFO     | --------------------------------------------------
[2026-01-20 21:09:53] 2026-01-20 21:08:48,197 | INFO     | 
[2026-01-20 21:09:53] 2026-01-20 21:08:48,197 | INFO     | executing command: ls -lF /var/lib/boinc/slots/25
[2026-01-20 21:09:53] 2026-01-20 21:08:48,217 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-20 21:09:53] 2026-01-20 21:08:48,218 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-20 21:09:53] 2026-01-20 21:08:48,218 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-20 21:09:53] 2026-01-20 21:08:48,218 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-20 21:09:53] 2026-01-20 21:08:48,218 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-20 21:09:53] 2026-01-20 21:08:48,218 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-20 21:09:53] 2026-01-20 21:08:48,218 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-20 21:09:53] 2026-01-20 21:08:48,218 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-20 21:09:53] 2026-01-20 21:08:48,218 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-20 21:09:53] 2026-01-20 21:08:48,219 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-20 21:09:53] 2026-01-20 21:08:48,219 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-20 21:09:53] 2026-01-20 21:08:48,219 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-20 21:09:53] 2026-01-20 21:08:48,219 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-20 21:09:53] 2026-01-20 21:08:48,219 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-20 21:09:53] 2026-01-20 21:08:48,219 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-20 21:09:53] 2026-01-20 21:08:48,219 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-20 21:09:53] 2026-01-20 21:08:48,219 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-20 21:09:53] 2026-01-20 21:08:48,219 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-20 21:09:53] 2026-01-20 21:08:48,219 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-20 21:09:53] 2026-01-20 21:08:48,219 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-20 21:09:53] 2026-01-20 21:08:48,220 | INFO     | job 6976471436 has completed (purged errors)
[2026-01-20 21:09:53] 2026-01-20 21:08:48,220 | INFO     | overall cleanup function is called
[2026-01-20 21:09:53] 2026-01-20 21:08:49,242 | INFO     | --- collectZombieJob: --- 10, [2487827]
[2026-01-20 21:09:53] 2026-01-20 21:08:49,242 | INFO     | zombie collector waiting for pid 2487827
[2026-01-20 21:09:53] 2026-01-20 21:08:49,242 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-20 21:09:53] 2026-01-20 21:08:49,242 | INFO     | collected zombie processes
[2026-01-20 21:09:53] 2026-01-20 21:08:49,242 | INFO     | will attempt to kill all subprocesses of pid=2487827
[2026-01-20 21:09:53] 2026-01-20 21:08:49,762 | INFO     | process IDs to be killed: [2487827] (in reverse order)
[2026-01-20 21:09:53] 2026-01-20 21:08:50,000 | WARNING  | found no corresponding commands to process id(s)
[2026-01-20 21:09:53] 2026-01-20 21:08:50,001 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-20 21:09:53] 2026-01-20 21:08:50,027 | INFO     | did not find any defunct processes belonging to 2487827
[2026-01-20 21:09:53] 2026-01-20 21:08:50,052 | INFO     | did not find any defunct processes belonging to 2487827
[2026-01-20 21:09:53] 2026-01-20 21:08:50,052 | INFO     | ready for new job
[2026-01-20 21:09:53] 2026-01-20 21:08:50,052 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-20 21:09:53] 2026-01-20 21:08:50,055 | INFO     | **************************************
[2026-01-20 21:09:53] 2026-01-20 21:08:50,055 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-20 21:09:53] 2026-01-20 21:08:50,055 | INFO     | **************************************
[2026-01-20 21:09:53] 2026-01-20 21:08:50,055 | INFO     | 
[2026-01-20 21:09:53] 2026-01-20 21:08:50,096 | INFO     | architecture information:
[2026-01-20 21:09:53] 2026-01-20 21:08:50,097 | INFO     | executing command: cat /etc/os-release
[2026-01-20 21:09:53] 2026-01-20 21:08:50,115 | INFO     | cat /etc/os-release:
[2026-01-20 21:09:53] NAME="CentOS Linux"
[2026-01-20 21:09:53] VERSION="7 (Core)"
[2026-01-20 21:09:53] ID="centos"
[2026-01-20 21:09:53] ID_LIKE="rhel fedora"
[2026-01-20 21:09:53] VERSION_ID="7"
[2026-01-20 21:09:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-20 21:09:53] ANSI_COLOR="0;31"
[2026-01-20 21:09:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-20 21:09:53] HOME_URL="https://www.centos.org/"
[2026-01-20 21:09:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-20 21:09:53] 
[2026-01-20 21:09:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-20 21:09:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-20 21:09:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-20 21:09:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-20 21:09:53] 
[2026-01-20 21:09:53] 2026-01-20 21:08:50,115 | INFO     | **************************************
[2026-01-20 21:09:53] 2026-01-20 21:08:50,618 | INFO     | executing command: df -mP /var/lib/boinc/slots/25
[2026-01-20 21:09:53] 2026-01-20 21:08:50,638 | INFO     | sufficient remaining disk space (1718197682176 B)
[2026-01-20 21:09:53] 2026-01-20 21:08:50,639 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-20 21:09:53] 2026-01-20 21:08:50,639 | INFO     | current server update state: UPDATING_FINAL
[2026-01-20 21:09:53] 2026-01-20 21:08:50,639 | INFO     | update_server=False
[2026-01-20 21:09:53] 2026-01-20 21:08:50,639 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-20 21:09:53] 2026-01-20 21:08:50,639 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-20 21:09:53] 2026-01-20 21:08:50,794 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-20 21:09:53] 2026-01-20 21:08:50,794 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-20 21:09:53] 2026-01-20 21:08:50,794 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-20 21:09:53] 2026-01-20 21:08:50,795 | INFO     | will abort loop
[2026-01-20 21:09:53] 2026-01-20 21:08:50,982 | INFO     | all payload control threads have been joined
[2026-01-20 21:09:53] 2026-01-20 21:08:51,328 | INFO     | all data control threads have been joined
[2026-01-20 21:09:53] 2026-01-20 21:08:51,590 | INFO     | all job control threads have been joined
[2026-01-20 21:09:53] 2026-01-20 21:08:51,644 | INFO     | [job] retrieve thread has finished
[2026-01-20 21:09:53] 2026-01-20 21:08:51,800 | INFO     | [job] job monitor thread has finished
[2026-01-20 21:09:53] 2026-01-20 21:08:51,988 | INFO     | [payload] control thread has finished
[2026-01-20 21:09:53] 2026-01-20 21:08:52,034 | INFO     | [payload] failed_post thread has finished
[2026-01-20 21:09:53] 2026-01-20 21:08:52,192 | INFO     | [payload] execute_payloads thread has finished
[2026-01-20 21:09:53] 2026-01-20 21:08:52,332 | INFO     | [data] control thread has finished
[2026-01-20 21:09:53] 2026-01-20 21:08:52,335 | INFO     | [job] validate thread has finished
[2026-01-20 21:09:53] 2026-01-20 21:08:52,359 | INFO     | [payload] validate_pre thread has finished
[2026-01-20 21:09:53] 2026-01-20 21:08:52,496 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-20 21:09:53] 2026-01-20 21:08:52,516 | INFO     | [job] create_data_payload thread has finished
[2026-01-20 21:09:53] 2026-01-20 21:08:52,596 | INFO     | [job] control thread has finished
[2026-01-20 21:09:53] 2026-01-20 21:08:52,645 | INFO     | [data] copytool_out thread has finished
[2026-01-20 21:09:53] 2026-01-20 21:08:52,676 | INFO     | [payload] validate_post thread has finished
[2026-01-20 21:09:53] 2026-01-20 21:08:52,708 | INFO     | [data] copytool_in thread has finished
[2026-01-20 21:09:53] 2026-01-20 21:08:52,828 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-20 21:09:53] 2026-01-20 21:08:53,615 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-20 21:09:53] 2026-01-20 21:08:53,832 | INFO     | [job] queue monitor thread has finished
[2026-01-20 21:09:53] 2026-01-20 21:08:57,621 | INFO     | [data] queue_monitor thread has finished
[2026-01-20 21:09:53] 2026-01-20 21:09:21,105 | INFO     | PID=2479076 has CPU usage=8.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-20 21:09:53] 2026-01-20 21:09:21,105 | INFO     | .. there are 13 such processes running
[2026-01-20 21:09:53] 2026-01-20 21:09:21,106 | INFO     | found 0 job(s) in 20 queues
[2026-01-20 21:09:53] 2026-01-20 21:09:21,106 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-20 21:09:53] 2026-01-20 21:09:21,106 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-20 21:09:53] 2026-01-20 21:09:46,575 | INFO     | [monitor] cgroup control has ended
[2026-01-20 21:09:53] 2026-01-20 21:09:48,481 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140205556426560)>', '<ExcThread(monitor, started 140205329856256)>']
[2026-01-20 21:09:53] 2026-01-20 21:09:49,235 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-20 21:09:53] 2026-01-20 21:09:49,235 | INFO     | [monitor] control thread has ended
[2026-01-20 21:09:53] 2026-01-20 21:09:53,507 | INFO     | all workflow threads have been joined
[2026-01-20 21:09:53] 2026-01-20 21:09:53,507 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-20 21:09:53] 2026-01-20 21:09:53,507 | INFO     | traces error code: 0
[2026-01-20 21:09:53] 2026-01-20 21:09:53,507 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-20 21:09:53] 2026-01-20 21:09:53,633 [wrapper] ==== pilot stdout END ====
[2026-01-20 21:09:53] 2026-01-20 21:09:53,637 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-20 21:09:53] 2026-01-20 21:09:53,639 [wrapper] pilotpid: 2479076
[2026-01-20 21:09:53] 2026-01-20 21:09:53,642 [wrapper] Pilot exit status: 0
[2026-01-20 21:09:53] 2026-01-20 21:09:53,651 [wrapper] pandaids: 6976471436
[2026-01-20 21:09:53] 2026-01-20 21:09:53,770 [wrapper] cleanup supervisor_pilot 2870699 2479077
[2026-01-20 21:09:53] 2026-01-20 21:09:53,772 [wrapper] Test setup, not cleaning
[2026-01-20 21:09:53] 2026-01-20 21:09:53,775 [wrapper] apfmon messages muted
[2026-01-20 21:09:53] 2026-01-20 21:09:53,777 [wrapper] ==== wrapper stdout END ====
[2026-01-20 21:09:53] 2026-01-20 21:09:53,781 [wrapper] ==== wrapper stderr END ====
[2026-01-20 21:09:53]  *** Error codes and diagnostics ***
[2026-01-20 21:09:53]     "exeErrorCode": 0,
[2026-01-20 21:09:53]     "exeErrorDiag": "",
[2026-01-20 21:09:53]     "pilotErrorCode": 0,
[2026-01-20 21:09:53]     "pilotErrorDiag": "",
[2026-01-20 21:09:53]  *** Listing of results directory ***
[2026-01-20 21:09:53] total 760768
[2026-01-20 21:09:53] -rw-r--r-- 1 boinc boinc    584422 Jan 20 14:43 pilot3.tar.gz
[2026-01-20 21:09:53] -rwx------ 1 boinc boinc     36322 Jan 20 14:57 runpilot2-wrapper.sh
[2026-01-20 21:09:53] -rw-r--r-- 1 boinc boinc      5111 Jan 20 14:57 queuedata.json
[2026-01-20 21:09:53] -rw-r--r-- 1 boinc boinc       100 Jan 20 18:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-20 21:09:53] -rwxr-xr-x 1 boinc boinc      7986 Jan 20 18:48 run_atlas
[2026-01-20 21:09:53] -rw-r--r-- 1 boinc boinc       105 Jan 20 18:48 job.xml
[2026-01-20 21:09:53] -rw-r--r-- 2 boinc boinc     15845 Jan 20 18:48 start_atlas.sh
[2026-01-20 21:09:53] drwxrwx--x 2 boinc boinc      4096 Jan 20 18:48 shared
[2026-01-20 21:09:53] -rw-r--r-- 2 boinc boinc    597965 Jan 20 18:48 input.tar.gz
[2026-01-20 21:09:53] -rw-r--r-- 1 boinc boinc      9415 Jan 20 18:48 init_data.xml
[2026-01-20 21:09:53] -rw-r--r-- 2 boinc boinc 415851232 Jan 20 18:48 EVNT.47961981._000078.pool.root.1
[2026-01-20 21:09:53] -rw-r--r-- 1 boinc boinc         0 Jan 20 18:48 boinc_setup_complete
[2026-01-20 21:09:53] -rw-r--r-- 1 boinc boinc         0 Jan 20 18:48 boinc_lockfile
[2026-01-20 21:09:53] -rw-r--r-- 1 boinc boinc      2876 Jan 20 18:48 pandaJob.out
[2026-01-20 21:09:53] -rw------- 1 boinc boinc   1003869 Jan 20 18:48 agis_schedconf.cvmfs.json
[2026-01-20 21:09:53] -rw------- 1 boinc boinc   1516246 Jan 20 18:48 agis_ddmendpoints.agis.ALL.json
[2026-01-20 21:09:53] -rw------- 1 boinc boinc       420 Jan 20 18:48 workernode_map.json
[2026-01-20 21:09:53] drwx------ 5 boinc boinc      4096 Jan 20 18:48 pilot3
[2026-01-20 21:09:53] -rw-r--r-- 1 boinc boinc       531 Jan 20 21:01 boinc_task_state.xml
[2026-01-20 21:09:53] -rw------- 1 boinc boinc 353287895 Jan 20 21:08 HITS.47961985._002242.pool.root.1
[2026-01-20 21:09:53] -rw------- 1 boinc boinc      1031 Jan 20 21:08 memory_monitor_summary.json
[2026-01-20 21:09:53] -rw------- 1 boinc boinc   1779413 Jan 20 21:08 log.47961985._002242.job.log.tgz.1
[2026-01-20 21:09:53] -rw------- 1 boinc boinc      6856 Jan 20 21:08 heartbeat.json
[2026-01-20 21:09:53] -rw------- 1 boinc boinc        95 Jan 20 21:09 pilot_heartbeat.json
[2026-01-20 21:09:53] -rw-r--r-- 1 boinc boinc      8192 Jan 20 21:09 boinc_mmap_file
[2026-01-20 21:09:53] -rw-r--r-- 1 boinc boinc        27 Jan 20 21:09 wrapper_checkpoint.txt
[2026-01-20 21:09:53] -rw------- 1 boinc boinc      5009 Jan 20 21:09 pilotlog.txt
[2026-01-20 21:09:53] -rw------- 1 boinc boinc   1188426 Jan 20 21:09 log.47961985._002242.job.log.1
[2026-01-20 21:09:53] -rw------- 1 boinc boinc       353 Jan 20 21:09 output.list
[2026-01-20 21:09:53] -rw-r--r-- 1 boinc boinc       620 Jan 20 21:09 runtime_log
[2026-01-20 21:09:53] -rw------- 1 boinc boinc   2990080 Jan 20 21:09 result.tar.gz
[2026-01-20 21:09:53] -rw-r--r-- 1 boinc boinc      8787 Jan 20 21:09 runtime_log.err
[2026-01-20 21:09:53] -rw------- 1 boinc boinc       646 Jan 20 21:09 D5RLDmXLS28n9Rq4apOajLDm4fhM0noT9bVo0NGKDmtEpKDmWUbZPn.diag
[2026-01-20 21:09:53] -rw-r--r-- 1 boinc boinc     20822 Jan 20 21:09 stderr.txt
[2026-01-20 21:09:53] HITS file was successfully produced:
[2026-01-20 21:09:53] -rw------- 1 boinc boinc 353287895 Jan 20 21:08 shared/HITS.pool.root.1
[2026-01-20 21:09:53]  *** Contents of shared directory: ***
[2026-01-20 21:09:53] total 754644
[2026-01-20 21:09:53] -rw-r--r-- 2 boinc boinc     15845 Jan 20 18:48 start_atlas.sh
[2026-01-20 21:09:53] -rw-r--r-- 2 boinc boinc    597965 Jan 20 18:48 input.tar.gz
[2026-01-20 21:09:53] -rw-r--r-- 2 boinc boinc 415851232 Jan 20 18:48 ATLAS.root_0
[2026-01-20 21:09:53] -rw------- 1 boinc boinc 353287895 Jan 20 21:08 HITS.pool.root.1
[2026-01-20 21:09:53] -rw------- 1 boinc boinc   2990080 Jan 20 21:09 result.tar.gz
21:09:55 (2469081): run_atlas exited; CPU time 95509.759256
21:09:55 (2469081): called boinc_finish(0)

</stderr_txt>
]]>

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