| Name | n0gMDmGKS28n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAApKDmcrugbn_0 |
| Workunit | 238583050 |
| Created | 20 Jan 2026, 15:00:24 UTC |
| Sent | 20 Jan 2026, 15:20:15 UTC |
| Report deadline | 28 Jan 2026, 15:20:15 UTC |
| Received | 21 Jan 2026, 11:52:38 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 10687303 |
| Run time | 3 hours 13 min 56 sec |
| CPU time | 1 days 4 hours 24 min 13 sec |
| Priority | 28 |
| Validate state | Valid |
| Credit | 1,452.46 |
| Device peak FLOPS | 64.71 GFLOPS |
| Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.62 GB |
| Peak swap size | 2.15 GB |
| Peak disk usage | 1.12 GB |
Stderr output
<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
23:52:10 (3386761): wrapper (7.7.26015): starting
23:52:10 (3386761): wrapper: running run_atlas (--nthreads 12)
[2026-01-20 23:52:10] Arguments: --nthreads 12
[2026-01-20 23:52:10] Threads: 12
[2026-01-20 23:52:10] Checking for CVMFS
[2026-01-20 23:52:10] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-20 23:52:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-20 23:52:10] Running cvmfs_config stat atlas.cern.ch
[2026-01-20 23:52:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-20 23:52:11] 2.12.7.0 3035651 811 56676 155371 1 74 2109013 4194304 2076 130560 0 866742 99.987 30188 2264 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2026-01-20 23:52:11] CVMFS is ok
[2026-01-20 23:52:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-20 23:52:11] Checking for apptainer binary...
[2026-01-20 23:52:11] apptainer is not installed, using version from CVMFS
[2026-01-20 23:52:11] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-20 23:52:11] Trebeth
[2026-01-20 23:52:11] apptainer works
[2026-01-20 23:52:11] Set ATHENA_PROC_NUMBER=12
[2026-01-20 23:52:11] Set ATHENA_CORE_NUMBER=12
[2026-01-20 23:52:11] Starting ATLAS job with PandaID=6976469953
[2026-01-20 23:52:11] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-21 03:06:04] *** The last 200 lines of the pilot log: ***
[2026-01-21 03:06:04] 2026-01-21 08:05:31,869 | INFO | ..............................
[2026-01-21 03:06:04] 2026-01-21 08:05:31,869 | INFO | . Timing measurements:
[2026-01-21 03:06:04] 2026-01-21 08:05:31,869 | INFO | . get job = 0 s
[2026-01-21 03:06:04] 2026-01-21 08:05:31,869 | INFO | . initial setup = 11 s
[2026-01-21 03:06:04] 2026-01-21 08:05:31,870 | INFO | . payload setup = 4 s
[2026-01-21 03:06:04] 2026-01-21 08:05:31,870 | INFO | . stage-in = 0 s
[2026-01-21 03:06:04] 2026-01-21 08:05:31,870 | INFO | . payload execution = 11330 s
[2026-01-21 03:06:04] 2026-01-21 08:05:31,870 | INFO | . stage-out = 69 s
[2026-01-21 03:06:04] 2026-01-21 08:05:31,870 | INFO | . log creation = 0 s
[2026-01-21 03:06:04] 2026-01-21 08:05:31,870 | INFO | ..............................
[2026-01-21 03:06:04] 2026-01-21 08:05:31,870 | INFO | building log extracts (sent to the server as 'pilotLog')
[2026-01-21 03:06:04] 2026-01-21 08:05:31,870 | INFO | executing command: tail -n 20 /var/lib/boinc-client/slots/0/PanDA_Pilot-6976469953/pilotlog.txt
[2026-01-21 03:06:04] 2026-01-21 08:05:31,885 | WARNING | detected the following tail of warning/fatal messages in the pilot log:
[2026-01-21 03:06:04] - Log from pilotlog.txt -
[2026-01-21 03:06:04] 2026-01-21 08:05:31,868 | INFO | sum of square deviations: 1523192031.6764674
[2026-01-21 03:06:04] 2026-01-21 08:05:31,868 | INFO | sum of deviations: -315237802275.6765
[2026-01-21 03:06:04] 2026-01-21 08:05:31,868 | INFO | mean x: 1768976935.9117646
[2026-01-21 03:06:04] 2026-01-21 08:05:31,868 | INFO | mean y: 2851838.8882352943
[2026-01-21 03:06:04] 2026-01-21 08:05:31,868 | INFO | intersect: 366107971847.57263
[2026-01-21 03:06:04] 2026-01-21 08:05:31,869 | INFO | chi2: 25.204293956260695
[2026-01-21 03:06:04] 2026-01-21 08:05:31,869 | INFO | current memory leak: -206.96 B/s (using 170 data points, chi2=25.20)
[2026-01-21 03:06:04] 2026-01-21 08:05:31,869 | INFO | could have reported an average CPU frequency of 2986 MHz (10 samples)
[2026-01-21 03:06:04] 2026-01-21 08:05:31,869 | INFO | ..............................
[2026-01-21 03:06:04] 2026-01-21 08:05:31,869 | INFO | . Timing measurements:
[2026-01-21 03:06:04] 2026-01-21 08:05:31,869 | INFO | . get job = 0 s
[2026-01-21 03:06:04] 2026-01-21 08:05:31,869 | INFO | . initial setup = 11 s
[2026-01-21 03:06:04] 2026-01-21 08:05:31,870 | INFO | . payload setup = 4 s
[2026-01-21 03:06:04] 2026-01-21 08:05:31,870 | INFO | . stage-in = 0 s
[2026-01-21 03:06:04] 2026-01-21 08:05:31,870 | INFO | . payload execution = 11330 s
[2026-01-21 03:06:04] 2026-01-21 08:05:31,870 | INFO | . stage-out = 69 s
[2026-01-21 03:06:04] 2026-01-21 08:05:31,870 | INFO | . log creation = 0 s
[2026-01-21 03:06:04] 2026-01-21 08:05:31,870 | INFO | ..............................
[2026-01-21 03:06:04] 2026-01-21 08:05:31,870 | INFO | building log extracts (sent to the server as 'pilotLog')
[2026-01-21 03:06:04] 2026-01-21 08:05:31,870 | INFO | executing command: tail -n 20 /var/lib/boinc-client/slots/0/PanDA_Pilot-6976469953/pilotlog.txt
[2026-01-21 03:06:04] 2026-01-21 08:05:31,885 | WARNING |
[2026-01-21 03:06:04] [begin log extracts]
[2026-01-21 03:06:04] - Log from pilotlog.txt -
[2026-01-21 03:06:04] 2026-01-21 08:05:31,868 | INFO | sum of square deviations: 1523192031.6764674
[2026-01-21 03:06:04] 2026-01-21 08:05:31,868 | INFO | sum of deviations: -315237802275.6765
[2026-01-21 03:06:04] 2026-01-21 08:05:31,868 | INFO | mean x: 1768976935.9117646
[2026-01-21 03:06:04] 2026-01-21 08:05:31,868 | INFO | mean y: 2851838.8882352943
[2026-01-21 03:06:04] 2026-01-21 08:05:31,868 | INFO | intersect: 366107971847.57263
[2026-01-21 03:06:04] 2026-01-21 08:05:31,869 | INFO | chi2: 25.204293956260695
[2026-01-21 03:06:04] 2026-01-21 08:05:31,869 | INFO | current memory leak: -206.96 B/s (using 170 data points, chi2=25.20)
[2026-01-21 03:06:04] 2026-01-21 08:05:31,869 | INFO | could have reported an average CPU frequency of 2986 MHz (10 samples)
[2026-01-21 03:06:04] 2026-01-21 08:05:31,869 | INFO | ..............................
[2026-01-21 03:06:04] 2026-01-21 08:05:31,869 | INFO | . Timing measurements:
[2026-01-21 03:06:04] 2026-01-21 08:05:31,869 | INFO | . get job = 0 s
[2026-01-21 03:06:04] 2026-01-21 08:05:31,869 | INFO | . initial setup = 11 s
[2026-01-21 03:06:04] 2026-01-21 08:05:31,870 | INFO | . payload setup = 4 s
[2026-01-21 03:06:04] 2026-01-21 08:05:31,870 | INFO | . stage-in = 0 s
[2026-01-21 03:06:04] 2026-01-21 08:05:31,870 | INFO | . payload execution = 11330 s
[2026-01-21 03:06:04] 2026-01-21 08:05:31,870 | INFO | . stage-out = 69 s
[2026-01-21 03:06:04] 2026-01-21 08:05:31,870 | INFO | . log creation = 0 s
[2026-01-21 03:06:04] 2026-01-21 08:05:31,870 | INFO | ..............................
[2026-01-21 03:06:04] 2026-01-21 08:05:31,870 | INFO | building log extracts (sent to the server as 'pilotLog')
[2026-01-21 03:06:04] 2026-01-21 08:05:31,870 | INFO | executing command: tail -n 20 /var/lib/boinc-client/slots/0/PanDA_Pilot-6976469953/pilotlog.txt
[2026-01-21 03:06:04] [end log extracts]
[2026-01-21 03:06:04] 2026-01-21 08:05:31,886 | WARNING | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2026-01-21 03:06:04] 2026-01-21 08:05:31,886 | WARNING | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute CRITICAL Transform executor raised TransformValidationException: HITSMergeAthenaMP
[2026-01-21 03:06:04] 2026-01-21 08:05:31,956 | INFO |
[2026-01-21 03:06:04] 2026-01-21 08:05:31,956 | INFO | job summary report
[2026-01-21 03:06:04] 2026-01-21 08:05:31,956 | INFO | --------------------------------------------------
[2026-01-21 03:06:04] 2026-01-21 08:05:31,956 | INFO | PanDA job id: 6976469953
[2026-01-21 03:06:04] 2026-01-21 08:05:31,956 | INFO | task id: 47961985
[2026-01-21 03:06:04] 2026-01-21 08:05:31,957 | INFO | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-01-21 03:01:33,760 CRITICAL Transform executor raised TransformValidationExceptio
[2026-01-21 03:06:04] 2026-01-21 08:05:31,957 | INFO | error 2/2: 1165: Local output file is missing
[2026-01-21 03:06:04] 2026-01-21 08:05:31,957 | INFO | status: LOG_TRANSFER = DONE
[2026-01-21 03:06:04] 2026-01-21 08:05:31,957 | INFO | pilot state: failed
[2026-01-21 03:06:04] 2026-01-21 08:05:31,957 | INFO | transexitcode: 65
[2026-01-21 03:06:04] 2026-01-21 08:05:31,957 | INFO | exeerrorcode: 65
[2026-01-21 03:06:04] 2026-01-21 08:05:31,957 | INFO | exeerrordiag: HITSMergeAthenaMP0 got a SIGABRT signal (exit code 134); Logfile error in log.HITSMergeAthenaMP0: "Segmentation fault: Event counter: 0; Run: unknown
[2026-01-21 03:06:04] 2026-01-21 08:05:31,958 | INFO | exitcode: 65
[2026-01-21 03:06:04] 2026-01-21 08:05:31,958 | INFO | exitmsg: HITSMergeAthenaMP0 got a SIGABRT signal (exit code 134); Logfile error in log.HITSMergeAthenaMP0: "Segmentation fault: Event counter: 0; Run: unknown; Evt
[2026-01-21 03:06:04] 2026-01-21 08:05:31,958 | INFO | cpuconsumptiontime: 102317 s
[2026-01-21 03:06:04] 2026-01-21 08:05:31,958 | INFO | nevents: 0
[2026-01-21 03:06:04] 2026-01-21 08:05:31,958 | INFO | neventsw: 0
[2026-01-21 03:06:04] 2026-01-21 08:05:31,958 | INFO | pid: 3395785
[2026-01-21 03:06:04] 2026-01-21 08:05:31,958 | INFO | pgrp: 3395785
[2026-01-21 03:06:04] 2026-01-21 08:05:31,959 | INFO | corecount: 12
[2026-01-21 03:06:04] 2026-01-21 08:05:31,959 | INFO | event service: False
[2026-01-21 03:06:04] 2026-01-21 08:05:31,959 | INFO | sizes: {0: 2284613, 1: 2284819, 11: 2284847, 11339: 2317640, 11410: 2321940, 11413: 2321996, 11569: 2322370}
[2026-01-21 03:06:04] 2026-01-21 08:05:31,959 | INFO | --------------------------------------------------
[2026-01-21 03:06:04] 2026-01-21 08:05:31,959 | INFO |
[2026-01-21 03:06:04] 2026-01-21 08:05:31,959 | INFO | executing command: ls -lF /var/lib/boinc-client/slots/0
[2026-01-21 03:06:04] 2026-01-21 08:05:31,979 | INFO | queue jobs had 0 job(s) [purged]
[2026-01-21 03:06:04] 2026-01-21 08:05:31,980 | INFO | queue payloads had 0 job(s) [purged]
[2026-01-21 03:06:04] 2026-01-21 08:05:31,980 | INFO | queue data_in had 0 job(s) [purged]
[2026-01-21 03:06:04] 2026-01-21 08:05:31,980 | INFO | queue data_out had 0 job(s) [purged]
[2026-01-21 03:06:04] 2026-01-21 08:05:31,980 | INFO | queue current_data_in had 0 job(s) [purged]
[2026-01-21 03:06:04] 2026-01-21 08:05:31,981 | INFO | queue validated_jobs had 0 job(s) [purged]
[2026-01-21 03:06:04] 2026-01-21 08:05:31,981 | INFO | queue validated_payloads had 0 job(s) [purged]
[2026-01-21 03:06:04] 2026-01-21 08:05:31,981 | INFO | queue monitored_payloads had 0 job(s) [purged]
[2026-01-21 03:06:04] 2026-01-21 08:05:31,981 | INFO | queue finished_jobs had 0 job(s) [purged]
[2026-01-21 03:06:04] 2026-01-21 08:05:31,981 | INFO | queue finished_payloads had 0 job(s) [purged]
[2026-01-21 03:06:04] 2026-01-21 08:05:31,981 | INFO | queue finished_data_in had 1 job(s) [purged]
[2026-01-21 03:06:04] 2026-01-21 08:05:31,981 | INFO | queue finished_data_out had 0 job(s) [purged]
[2026-01-21 03:06:04] 2026-01-21 08:05:31,982 | INFO | queue failed_jobs had 0 job(s) [purged]
[2026-01-21 03:06:04] 2026-01-21 08:05:31,982 | INFO | queue failed_payloads had 0 job(s) [purged]
[2026-01-21 03:06:04] 2026-01-21 08:05:31,982 | INFO | queue failed_data_in had 0 job(s) [purged]
[2026-01-21 03:06:04] 2026-01-21 08:05:31,982 | INFO | queue failed_data_out had 0 job(s) [purged]
[2026-01-21 03:06:04] 2026-01-21 08:05:31,982 | INFO | queue completed_jobs had 0 job(s) [purged]
[2026-01-21 03:06:04] 2026-01-21 08:05:31,982 | INFO | queue completed_jobids has 1 job(s)
[2026-01-21 03:06:04] 2026-01-21 08:05:31,983 | INFO | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-21 03:06:04] 2026-01-21 08:05:31,983 | INFO | queue messages had 0 job(s) [purged]
[2026-01-21 03:06:04] 2026-01-21 08:05:31,983 | INFO | job 6976469953 has completed (purged errors)
[2026-01-21 03:06:04] 2026-01-21 08:05:31,983 | INFO | overall cleanup function is called
[2026-01-21 03:06:04] 2026-01-21 08:05:32,001 | INFO | PID=3390967 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-21 03:06:04] 2026-01-21 08:05:32,001 | INFO | .. there are 3 such processes running
[2026-01-21 03:06:04] 2026-01-21 08:05:33,002 | INFO | --- collectZombieJob: --- 10, [3395785]
[2026-01-21 03:06:04] 2026-01-21 08:05:33,002 | INFO | zombie collector waiting for pid 3395785
[2026-01-21 03:06:04] 2026-01-21 08:05:33,003 | INFO | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-21 03:06:04] 2026-01-21 08:05:33,003 | INFO | collected zombie processes
[2026-01-21 03:06:04] 2026-01-21 08:05:33,003 | INFO | will attempt to kill all subprocesses of pid=3395785
[2026-01-21 03:06:04] 2026-01-21 08:05:33,152 | INFO | process IDs to be killed: [3395785] (in reverse order)
[2026-01-21 03:06:04] 2026-01-21 08:05:33,199 | WARNING | found no corresponding commands to process id(s)
[2026-01-21 03:06:04] 2026-01-21 08:05:33,199 | INFO | Do not look for orphan processes in BOINC jobs
[2026-01-21 03:06:04] 2026-01-21 08:05:33,206 | INFO | did not find any defunct processes belonging to 3395785
[2026-01-21 03:06:04] 2026-01-21 08:05:33,213 | INFO | did not find any defunct processes belonging to 3395785
[2026-01-21 03:06:04] 2026-01-21 08:05:33,213 | INFO | ready for new job
[2026-01-21 03:06:04] 2026-01-21 08:05:33,213 | INFO | pilot has finished with previous job - re-establishing logging
[2026-01-21 03:06:04] 2026-01-21 08:05:33,215 | INFO | **************************************
[2026-01-21 03:06:04] 2026-01-21 08:05:33,215 | INFO | *** PanDA Pilot version 3.11.3.9 ***
[2026-01-21 03:06:04] 2026-01-21 08:05:33,215 | INFO | **************************************
[2026-01-21 03:06:04] 2026-01-21 08:05:33,215 | INFO |
[2026-01-21 03:06:04] 2026-01-21 08:05:33,238 | INFO | architecture information:
[2026-01-21 03:06:04] 2026-01-21 08:05:33,239 | INFO | executing command: cat /etc/os-release
[2026-01-21 03:06:04] 2026-01-21 08:05:33,253 | INFO | cat /etc/os-release:
[2026-01-21 03:06:04] NAME="CentOS Linux"
[2026-01-21 03:06:04] VERSION="7 (Core)"
[2026-01-21 03:06:04] ID="centos"
[2026-01-21 03:06:04] ID_LIKE="rhel fedora"
[2026-01-21 03:06:04] VERSION_ID="7"
[2026-01-21 03:06:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-21 03:06:04] ANSI_COLOR="0;31"
[2026-01-21 03:06:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-21 03:06:04] HOME_URL="https://www.centos.org/"
[2026-01-21 03:06:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-21 03:06:04]
[2026-01-21 03:06:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-21 03:06:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-21 03:06:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-21 03:06:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-21 03:06:04]
[2026-01-21 03:06:04] 2026-01-21 08:05:33,253 | INFO | **************************************
[2026-01-21 03:06:04] 2026-01-21 08:05:33,755 | INFO | executing command: df -mP /var/lib/boinc-client/slots/0
[2026-01-21 03:06:04] 2026-01-21 08:05:33,769 | INFO | sufficient remaining disk space (388246798336 B)
[2026-01-21 03:06:04] 2026-01-21 08:05:33,770 | WARNING | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-21 03:06:04] 2026-01-21 08:05:33,770 | INFO | current server update state: UPDATING_FINAL
[2026-01-21 03:06:04] 2026-01-21 08:05:33,770 | INFO | update_server=False
[2026-01-21 03:06:04] 2026-01-21 08:05:33,770 | WARNING | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-21 03:06:04] 2026-01-21 08:05:33,770 | WARNING | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-21 03:06:04] 2026-01-21 08:05:33,770 | WARNING | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-21 03:06:04] 2026-01-21 08:05:33,846 | INFO | all job control threads have been joined
[2026-01-21 03:06:04] 2026-01-21 08:05:34,202 | WARNING | job monitor detected an abort_job request (signal=args.signal)
[2026-01-21 03:06:04] 2026-01-21 08:05:34,202 | WARNING | cannot recover job monitoring - aborting pilot
[2026-01-21 03:06:04] 2026-01-21 08:05:34,203 | WARNING | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-21 03:06:04] 2026-01-21 08:05:34,203 | INFO | will abort loop
[2026-01-21 03:06:04] 2026-01-21 08:05:34,741 | INFO | all data control threads have been joined
[2026-01-21 03:06:04] 2026-01-21 08:05:34,775 | INFO | [job] retrieve thread has finished
[2026-01-21 03:06:04] 2026-01-21 08:05:34,776 | INFO | [job] queue monitor thread has finished
[2026-01-21 03:06:04] 2026-01-21 08:05:34,830 | INFO | [job] validate thread has finished
[2026-01-21 03:06:04] 2026-01-21 08:05:34,852 | INFO | [job] control thread has finished
[2026-01-21 03:06:04] 2026-01-21 08:05:34,902 | INFO | [payload] validate_pre thread has finished
[2026-01-21 03:06:04] 2026-01-21 08:05:34,946 | INFO | all payload control threads have been joined
[2026-01-21 03:06:04] 2026-01-21 08:05:34,996 | INFO | [payload] failed_post thread has finished
[2026-01-21 03:06:04] 2026-01-21 08:05:35,118 | WARNING | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-21 03:06:04] 2026-01-21 08:05:35,166 | INFO | [payload] execute_payloads thread has finished
[2026-01-21 03:06:04] 2026-01-21 08:05:35,208 | INFO | [job] job monitor thread has finished
[2026-01-21 03:06:04] 2026-01-21 08:05:35,383 | INFO | [data] copytool_in thread has finished
[2026-01-21 03:06:04] 2026-01-21 08:05:35,498 | INFO | [payload] run_realtimelog thread has finished
[2026-01-21 03:06:04] 2026-01-21 08:05:35,746 | INFO | [data] control thread has finished
[2026-01-21 03:06:04] 2026-01-21 08:05:35,776 | INFO | [data] copytool_out thread has finished
[2026-01-21 03:06:04] 2026-01-21 08:05:35,952 | INFO | [payload] control thread has finished
[2026-01-21 03:06:04] 2026-01-21 08:05:36,119 | INFO | [payload] validate_post thread has finished
[2026-01-21 03:06:04] 2026-01-21 08:05:36,122 | INFO | [job] create_data_payload thread has finished
[2026-01-21 03:06:04] 2026-01-21 08:05:39,122 | INFO | [data] queue_monitor thread has finished
[2026-01-21 03:06:04] 2026-01-21 08:05:49,524 | INFO | [monitor] cgroup control has ended
[2026-01-21 03:06:04] 2026-01-21 08:05:50,628 | INFO | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139640157284160)>', '<ExcThread(monitor, started 139639587337984)>']
[2026-01-21 03:06:04] 2026-01-21 08:05:55,654 | INFO | all workflow threads have been joined
[2026-01-21 03:06:04] 2026-01-21 08:05:55,654 | INFO | end of generic workflow (traces error code: 0)
[2026-01-21 03:06:04] 2026-01-21 08:05:55,654 | INFO | traces error code: 0
[2026-01-21 03:06:04] 2026-01-21 08:05:55,655 | INFO | pilot has finished (exit code=0, shell exit code=0)
[2026-01-21 03:06:04] 2026-01-21 08:06:04,236 | INFO | PID=3390967 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-21 03:06:04] 2026-01-21 08:06:04,236 | INFO | .. there are 3 such processes running
[2026-01-21 03:06:04] 2026-01-21 08:06:04,237 | INFO | found 0 job(s) in 20 queues
[2026-01-21 03:06:04] 2026-01-21 08:06:04,237 | WARNING | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-21 03:06:04] 2026-01-21 08:06:04,237 | WARNING | will wait for a maximum of 300 s for threads to finish
[2026-01-21 03:06:04] 2026-01-21 08:06:04,237 | WARNING | job_aborted has been set - aborting pilot monitoring
[2026-01-21 03:06:04] 2026-01-21 08:06:04,237 | INFO | [monitor] control thread has ended
[2026-01-21 03:06:04] 2026-01-21 08:06:04,316 [wrapper] ==== pilot stdout END ====
[2026-01-21 03:06:04] 2026-01-21 08:06:04,319 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-21 03:06:04] 2026-01-21 08:06:04,322 [wrapper] pilotpid: 3390967
[2026-01-21 03:06:04] 2026-01-21 08:06:04,324 [wrapper] Pilot exit status: 0
[2026-01-21 03:06:04] 2026-01-21 08:06:04,334 [wrapper] pandaids: 6976469953
[2026-01-21 03:06:04] 2026-01-21 08:06:04,369 [wrapper] cleanup supervisor_pilot 3467466 3390968
[2026-01-21 03:06:04] 2026-01-21 08:06:04,372 [wrapper] Test setup, not cleaning
[2026-01-21 03:06:04] 2026-01-21 08:06:04,375 [wrapper] apfmon messages muted
[2026-01-21 03:06:04] 2026-01-21 08:06:04,377 [wrapper] ==== wrapper stdout END ====
[2026-01-21 03:06:04] 2026-01-21 08:06:04,381 [wrapper] ==== wrapper stderr END ====
[2026-01-21 03:06:04] *** Error codes and diagnostics ***
[2026-01-21 03:06:04] "exeErrorCode": 65,
[2026-01-21 03:06:04] "exeErrorDiag": "HITSMergeAthenaMP0 got a SIGABRT signal (exit code 134); Logfile error in log.HITSMergeAthenaMP0: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm: <NONE>; Current Function: unknown\"",
[2026-01-21 03:06:04] "pilotErrorCode": 1305,
[2026-01-21 03:06:04] "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute CRITICAL Transform executor raised TransformValidationException: HITSMergeAthenaMP0 got a SIGABRT signal (exit code 134); Logfile error in log.HITSMergeAthenaMP0: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unk",
[2026-01-21 03:06:04] *** Listing of results directory ***
[2026-01-21 03:06:04] total 415404
[2026-01-21 03:06:04] -rw-r--r-- 1 boinc boinc 584422 Jan 20 09:43 pilot3.tar.gz
[2026-01-21 03:06:04] -rwx------ 1 boinc boinc 36322 Jan 20 09:55 runpilot2-wrapper.sh
[2026-01-21 03:06:04] -rw-r--r-- 1 boinc boinc 5111 Jan 20 09:57 queuedata.json
[2026-01-21 03:06:04] -rw-r--r-- 1 boinc boinc 100 Jan 20 23:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-21 03:06:04] -rwxr-xr-x 1 boinc boinc 7986 Jan 20 23:52 run_atlas
[2026-01-21 03:06:04] -rw-r--r-- 1 boinc boinc 105 Jan 20 23:52 job.xml
[2026-01-21 03:06:04] -rw-r--r-- 2 boinc boinc 15845 Jan 20 23:52 start_atlas.sh
[2026-01-21 03:06:04] drwxrwx--x 2 boinc boinc 4096 Jan 20 23:52 shared
[2026-01-21 03:06:04] -rw-r--r-- 2 boinc boinc 597965 Jan 20 23:52 input.tar.gz
[2026-01-21 03:06:04] -rw-r--r-- 1 boinc boinc 7579 Jan 20 23:52 init_data.xml
[2026-01-21 03:06:04] -rw-r--r-- 2 boinc boinc 414746943 Jan 20 23:52 EVNT.47961981._000056.pool.root.1
[2026-01-21 03:06:04] -rw-r--r-- 1 boinc boinc 0 Jan 20 23:52 boinc_lockfile
[2026-01-21 03:06:04] -rw-r--r-- 1 boinc boinc 2876 Jan 20 23:52 pandaJob.out
[2026-01-21 03:06:04] -rw------- 1 boinc boinc 50 Jan 20 23:52 setup.sh.local
[2026-01-21 03:06:04] -rw------- 1 boinc boinc 1002651 Jan 20 23:52 agis_schedconf.cvmfs.json
[2026-01-21 03:06:04] -rw------- 1 boinc boinc 430 Jan 20 23:52 workernode_map.json
[2026-01-21 03:06:04] drwx------ 5 boinc boinc 4096 Jan 20 23:52 pilot3
[2026-01-21 03:06:04] -rw-r--r-- 1 boinc boinc 531 Jan 21 02:22 boinc_task_state.xml
[2026-01-21 03:06:04] -rw------- 1 boinc boinc 1034 Jan 21 03:01 memory_monitor_summary.json
[2026-01-21 03:06:04] -rw------- 1 boinc boinc 1758282 Jan 21 03:01 log.47961985._001701.job.log.tgz.1
[2026-01-21 03:06:04] -rw------- 1 boinc boinc 0 Jan 21 03:02 agis_ddmendpoints.agis.ALL.json
[2026-01-21 03:06:04] -rw------- 1 boinc boinc 1263239 Jan 21 03:02 cric_ddmendpoints.json
[2026-01-21 03:06:04] -rw------- 1 boinc boinc 9344 Jan 21 03:05 heartbeat.json
[2026-01-21 03:06:04] -rw-r--r-- 1 boinc boinc 8192 Jan 21 03:06 boinc_mmap_file
[2026-01-21 03:06:04] -rw-r--r-- 1 boinc boinc 29 Jan 21 03:06 wrapper_checkpoint.txt
[2026-01-21 03:06:04] -rw------- 1 boinc boinc 822 Jan 21 03:06 pilotlog.txt
[2026-01-21 03:06:04] -rw------- 1 boinc boinc 95 Jan 21 03:06 pilot_heartbeat.json
[2026-01-21 03:06:04] -rw------- 1 boinc boinc 1711245 Jan 21 03:06 log.47961985._001701.job.log.1
[2026-01-21 03:06:04] -rw------- 1 boinc boinc 186 Jan 21 03:06 output.list
[2026-01-21 03:06:04] -rw-r--r-- 1 boinc boinc 620 Jan 21 03:06 runtime_log
[2026-01-21 03:06:04] -rw------- 1 boinc boinc 3491840 Jan 21 03:06 result.tar.gz
[2026-01-21 03:06:04] -rw-r--r-- 1 boinc boinc 9252 Jan 21 03:06 runtime_log.err
[2026-01-21 03:06:04] -rw------- 1 boinc boinc 655 Jan 21 03:06 n0gMDmGKS28n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAApKDmcrugbn.diag
[2026-01-21 03:06:04] -rw-r--r-- 1 boinc boinc 21888 Jan 21 03:06 stderr.txt
[2026-01-21 03:06:04] No HITS result produced
[2026-01-21 03:06:04] *** Contents of shared directory: ***
[2026-01-21 03:06:04] total 409044
[2026-01-21 03:06:04] -rw-r--r-- 2 boinc boinc 15845 Jan 20 23:52 start_atlas.sh
[2026-01-21 03:06:04] -rw-r--r-- 2 boinc boinc 597965 Jan 20 23:52 input.tar.gz
[2026-01-21 03:06:04] -rw-r--r-- 2 boinc boinc 414746943 Jan 20 23:52 ATLAS.root_0
[2026-01-21 03:06:04] -rw------- 1 boinc boinc 3491840 Jan 21 03:06 result.tar.gz
03:06:05 (3386761): run_atlas exited; CPU time 102252.978454
03:06:05 (3386761): called boinc_finish(0)
</stderr_txt>
]]>
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