Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:36:43 (3299042): wrapper (7.7.26015): starting
09:36:43 (3299042): wrapper: running run_atlas (--nthreads 12)
[2026-01-18 09:36:43] Arguments: --nthreads 12
[2026-01-18 09:36:43] Threads: 12
[2026-01-18 09:36:43] Checking for CVMFS
[2026-01-18 09:36:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-18 09:36:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-18 09:36:44] Running cvmfs_config stat atlas.cern.ch
[2026-01-18 09:36:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-18 09:36:45] 2.13.3.0 6529 34165 175800 155281 2 54 22018150 40960000 8120 16776704 0 22270987 99.745 18960712 33930 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-18 09:36:45] CVMFS is ok
[2026-01-18 09:36:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-18 09:36:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-18 09:36:45] Further information can be found at the LHC@home message board.
[2026-01-18 09:36:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-18 09:36:45] Checking for apptainer binary...
[2026-01-18 09:36:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-18 09:36:45] Running /usr/bin/apptainer --version
[2026-01-18 09:36:45] apptainer version 1.4.5-2.el9
[2026-01-18 09:36:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-18 09:36:45] c-211-15.aglt2.org
[2026-01-18 09:36:45] apptainer works
[2026-01-18 09:36:45] Set ATHENA_PROC_NUMBER=12
[2026-01-18 09:36:45] Set ATHENA_CORE_NUMBER=12
[2026-01-18 09:36:45] Starting ATLAS job with PandaID=6969253874
[2026-01-18 09:36:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-18 13:49:08]  *** The last 200 lines of the pilot log: ***
[2026-01-18 13:49:08] 2026-01-18 18:48:16,610 | INFO     | executing command: lscpu
[2026-01-18 13:49:08] 2026-01-18 18:48:16,663 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-18 13:49:08] 2026-01-18 18:48:16,936 | INFO     | time since job start (15042s) is within the limit (349056.0s)
[2026-01-18 13:49:08] 2026-01-18 18:48:18,913 | INFO     | monitor loop #875: job 0:6969253874 is in state 'finished'
[2026-01-18 13:49:08] 2026-01-18 18:48:18,913 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-18 13:49:08] 2026-01-18 18:48:18,942 | INFO     | time since job start (15044s) is within the limit (349056.0s)
[2026-01-18 13:49:08] 2026-01-18 18:48:20,300 | INFO     | PID=3303267 has CPU usage=11.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-18 13:49:08] 2026-01-18 18:48:20,300 | INFO     | .. there are 7 such processes running
[2026-01-18 13:49:08] 2026-01-18 18:48:21,233 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-18 13:49:08] 2026-01-18 18:48:21,242 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2575.783125
[2026-01-18 13:49:08] 2026-01-18 18:48:21,252 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6969253874/memory_monitor_summary.json (trf name=prmon)
[2026-01-18 13:49:08] 2026-01-18 18:48:21,253 | INFO     | extracted standard info from prmon json
[2026-01-18 13:49:08] 2026-01-18 18:48:21,253 | INFO     | extracted standard memory fields from prmon json
[2026-01-18 13:49:08] 2026-01-18 18:48:21,253 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-18 13:49:08] 2026-01-18 18:48:21,253 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-18 13:49:08] 2026-01-18 18:48:21,253 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-18 13:49:08] 2026-01-18 18:48:21,259 | INFO     | fitting pss+swap vs Time
[2026-01-18 13:49:08] 2026-01-18 18:48:21,259 | INFO     | sum of square deviations: 4560063513.453044
[2026-01-18 13:49:08] 2026-01-18 18:48:21,261 | INFO     | sum of deviations: 29136219054.812214
[2026-01-18 13:49:08] 2026-01-18 18:48:21,261 | INFO     | mean x: 1768754586.8244898
[2026-01-18 13:49:08] 2026-01-18 18:48:21,262 | INFO     | mean y: 2766433.297959184
[2026-01-18 13:49:08] 2026-01-18 18:48:21,262 | INFO     | intersect: -11298572011.634838
[2026-01-18 13:49:08] 2026-01-18 18:48:21,262 | INFO     | chi2: 2.345732395084719
[2026-01-18 13:49:08] 2026-01-18 18:48:21,263 | INFO     | sum of square deviations: 4286534996.65
[2026-01-18 13:49:08] 2026-01-18 18:48:21,265 | INFO     | sum of deviations: 28173073862.47499
[2026-01-18 13:49:08] 2026-01-18 18:48:21,265 | INFO     | mean x: 1768754434.325
[2026-01-18 13:49:08] 2026-01-18 18:48:21,265 | INFO     | mean y: 2765896.2375
[2026-01-18 13:49:08] 2026-01-18 18:48:21,265 | INFO     | intersect: -11622299421.498707
[2026-01-18 13:49:08] 2026-01-18 18:48:21,266 | INFO     | chi2: 2.346865958191372
[2026-01-18 13:49:08] 2026-01-18 18:48:21,266 | INFO     | current chi2=2.346865958191372 (change=-0.04832448530906488 %)
[2026-01-18 13:49:08] 2026-01-18 18:48:21,266 | INFO     | right removable region: 239
[2026-01-18 13:49:08] 2026-01-18 18:48:21,266 | INFO     | sum of square deviations: 4286471189.983318
[2026-01-18 13:49:08] 2026-01-18 18:48:21,268 | INFO     | sum of deviations: -26938610842.566677
[2026-01-18 13:49:08] 2026-01-18 18:48:21,268 | INFO     | mean x: 1768754739.3416667
[2026-01-18 13:49:08] 2026-01-18 18:48:21,269 | INFO     | mean y: 2797492.1166666667
[2026-01-18 13:49:08] 2026-01-18 18:48:21,269 | INFO     | intersect: 11118653282.869352
[2026-01-18 13:49:08] 2026-01-18 18:48:21,269 | INFO     | chi2: 0.28290974014671855
[2026-01-18 13:49:08] 2026-01-18 18:48:21,269 | INFO     | current chi2=0.28290974014671855 (change=87.93938555226795 %)
[2026-01-18 13:49:08] 2026-01-18 18:48:21,270 | INFO     | sum of square deviations: 4024070781.7872286
[2026-01-18 13:49:08] 2026-01-18 18:48:21,271 | INFO     | sum of deviations: -29753828181.234066
[2026-01-18 13:49:08] 2026-01-18 18:48:21,272 | INFO     | mean x: 1768754891.8510637
[2026-01-18 13:49:08] 2026-01-18 18:48:21,272 | INFO     | mean y: 2799070.5361702126
[2026-01-18 13:49:08] 2026-01-18 18:48:21,272 | INFO     | intersect: 13080906290.976322
[2026-01-18 13:49:08] 2026-01-18 18:48:21,272 | INFO     | chi2: 0.23690371532199853
[2026-01-18 13:49:08] 2026-01-18 18:48:21,273 | INFO     | current chi2=0.23690371532199853 (change=16.261732381805253 %)
[2026-01-18 13:49:08] 2026-01-18 18:48:21,273 | INFO     | left removable region: 20
[2026-01-18 13:49:08] 2026-01-18 18:48:21,273 | INFO     | sum of square deviations: 3256850838.082174
[2026-01-18 13:49:08] 2026-01-18 18:48:21,275 | INFO     | sum of deviations: -8337515209.000005
[2026-01-18 13:49:08] 2026-01-18 18:48:21,275 | INFO     | mean x: 1768755013.8356164
[2026-01-18 13:49:08] 2026-01-18 18:48:21,275 | INFO     | mean y: 2785416.3333333335
[2026-01-18 13:49:08] 2026-01-18 18:48:21,275 | INFO     | intersect: 4530785795.231061
[2026-01-18 13:49:08] 2026-01-18 18:48:21,276 | INFO     | chi2: 0.1460292179003749
[2026-01-18 13:49:08] 2026-01-18 18:48:21,276 | INFO     | current memory leak: -2.56 B/s (using 219 data points, chi2=0.15)
[2026-01-18 13:49:08] 2026-01-18 18:48:21,276 | INFO     | could have reported an average CPU frequency of 2536 MHz (12 samples)
[2026-01-18 13:49:08] 2026-01-18 18:48:21,277 | INFO     | ..............................
[2026-01-18 13:49:08] 2026-01-18 18:48:21,277 | INFO     | . Timing measurements:
[2026-01-18 13:49:08] 2026-01-18 18:48:21,277 | INFO     | . get job = 0 s
[2026-01-18 13:49:08] 2026-01-18 18:48:21,277 | INFO     | . initial setup = 3 s
[2026-01-18 13:49:08] 2026-01-18 18:48:21,277 | INFO     | . payload setup = 28 s
[2026-01-18 13:49:08] 2026-01-18 18:48:21,277 | INFO     | . stage-in = 0 s
[2026-01-18 13:49:08] 2026-01-18 18:48:21,277 | INFO     | . payload execution = 14962 s
[2026-01-18 13:49:08] 2026-01-18 18:48:21,277 | INFO     | . stage-out = 2 s
[2026-01-18 13:49:08] 2026-01-18 18:48:21,278 | INFO     | . log creation = 0 s
[2026-01-18 13:49:08] 2026-01-18 18:48:21,278 | INFO     | ..............................
[2026-01-18 13:49:08] 2026-01-18 18:48:21,305 | INFO     | time since job start (15047s) is within the limit (349056.0s)
[2026-01-18 13:49:08] 2026-01-18 18:48:21,869 | INFO     | 
[2026-01-18 13:49:08] 2026-01-18 18:48:21,870 | INFO     | job summary report
[2026-01-18 13:49:08] 2026-01-18 18:48:21,870 | INFO     | --------------------------------------------------
[2026-01-18 13:49:08] 2026-01-18 18:48:21,870 | INFO     | PanDA job id: 6969253874
[2026-01-18 13:49:08] 2026-01-18 18:48:21,870 | INFO     | task id: 48215263
[2026-01-18 13:49:08] 2026-01-18 18:48:21,870 | INFO     | errors: (none)
[2026-01-18 13:49:08] 2026-01-18 18:48:21,870 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-18 13:49:08] 2026-01-18 18:48:21,871 | INFO     | pilot state: finished 
[2026-01-18 13:49:08] 2026-01-18 18:48:21,871 | INFO     | transexitcode: 0
[2026-01-18 13:49:08] 2026-01-18 18:48:21,871 | INFO     | exeerrorcode: 0
[2026-01-18 13:49:08] 2026-01-18 18:48:21,871 | INFO     | exeerrordiag: 
[2026-01-18 13:49:08] 2026-01-18 18:48:21,871 | INFO     | exitcode: 0
[2026-01-18 13:49:08] 2026-01-18 18:48:21,871 | INFO     | exitmsg: OK
[2026-01-18 13:49:08] 2026-01-18 18:48:21,871 | INFO     | cpuconsumptiontime: 39762 s
[2026-01-18 13:49:08] 2026-01-18 18:48:21,871 | INFO     | nevents: 400
[2026-01-18 13:49:08] 2026-01-18 18:48:21,871 | INFO     | neventsw: 0
[2026-01-18 13:49:08] 2026-01-18 18:48:21,872 | INFO     | pid: 3311306
[2026-01-18 13:49:08] 2026-01-18 18:48:21,872 | INFO     | pgrp: 3311306
[2026-01-18 13:49:08] 2026-01-18 18:48:21,872 | INFO     | corecount: 12
[2026-01-18 13:49:08] 2026-01-18 18:48:21,872 | INFO     | event service: False
[2026-01-18 13:49:08] 2026-01-18 18:48:21,872 | INFO     | sizes: {0: 2283709, 1: 2283793, 2: 2283992, 3: 2283992, 13: 2284020, 20: 2284338, 24: 2284494, 14994: 2315139, 14995: 2315138, 14997: 2324192, 15000: 2324248, 1500
[2026-01-18 13:49:08] 2026-01-18 18:48:21,872 | INFO     | --------------------------------------------------
[2026-01-18 13:49:08] 2026-01-18 18:48:21,872 | INFO     | 
[2026-01-18 13:49:08] 2026-01-18 18:48:21,873 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-18 13:49:08] 2026-01-18 18:48:21,977 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-18 13:49:08] 2026-01-18 18:48:21,977 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-18 13:49:08] 2026-01-18 18:48:21,977 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-18 13:49:08] 2026-01-18 18:48:21,977 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-18 13:49:08] 2026-01-18 18:48:21,978 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-18 13:49:08] 2026-01-18 18:48:21,978 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-18 13:49:08] 2026-01-18 18:48:21,978 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-18 13:49:08] 2026-01-18 18:48:21,978 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-18 13:49:08] 2026-01-18 18:48:21,978 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-18 13:49:08] 2026-01-18 18:48:21,978 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-18 13:49:08] 2026-01-18 18:48:21,978 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-18 13:49:08] 2026-01-18 18:48:21,978 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-18 13:49:08] 2026-01-18 18:48:21,979 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-18 13:49:08] 2026-01-18 18:48:21,979 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-18 13:49:08] 2026-01-18 18:48:21,979 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-18 13:49:08] 2026-01-18 18:48:21,979 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-18 13:49:08] 2026-01-18 18:48:21,979 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-18 13:49:08] 2026-01-18 18:48:21,979 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-18 13:49:08] 2026-01-18 18:48:21,979 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-18 13:49:08] 2026-01-18 18:48:21,979 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-18 13:49:08] 2026-01-18 18:48:21,980 | INFO     | job 6969253874 has completed (purged errors)
[2026-01-18 13:49:08] 2026-01-18 18:48:21,980 | INFO     | overall cleanup function is called
[2026-01-18 13:49:08] 2026-01-18 18:48:22,989 | INFO     | --- collectZombieJob: --- 10, [3311306]
[2026-01-18 13:49:08] 2026-01-18 18:48:22,989 | INFO     | zombie collector waiting for pid 3311306
[2026-01-18 13:49:08] 2026-01-18 18:48:22,989 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-18 13:49:08] 2026-01-18 18:48:22,989 | INFO     | collected zombie processes
[2026-01-18 13:49:08] 2026-01-18 18:48:22,989 | INFO     | will attempt to kill all subprocesses of pid=3311306
[2026-01-18 13:49:08] 2026-01-18 18:48:23,291 | INFO     | process IDs to be killed: [3311306] (in reverse order)
[2026-01-18 13:49:08] 2026-01-18 18:48:23,377 | WARNING  | found no corresponding commands to process id(s)
[2026-01-18 13:49:08] 2026-01-18 18:48:23,377 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-18 13:49:08] 2026-01-18 18:48:23,387 | INFO     | did not find any defunct processes belonging to 3311306
[2026-01-18 13:49:08] 2026-01-18 18:48:23,398 | INFO     | did not find any defunct processes belonging to 3311306
[2026-01-18 13:49:08] 2026-01-18 18:48:23,398 | INFO     | ready for new job
[2026-01-18 13:49:08] 2026-01-18 18:48:23,398 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-18 13:49:08] 2026-01-18 18:48:23,401 | INFO     | ***************************************
[2026-01-18 13:49:08] 2026-01-18 18:48:23,401 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-18 13:49:08] 2026-01-18 18:48:23,402 | INFO     | ***************************************
[2026-01-18 13:49:08] 2026-01-18 18:48:23,402 | INFO     | 
[2026-01-18 13:49:08] 2026-01-18 18:48:23,405 | INFO     | architecture information:
[2026-01-18 13:49:08] 2026-01-18 18:48:23,406 | INFO     | executing command: cat /etc/os-release
[2026-01-18 13:49:08] 2026-01-18 18:48:23,422 | INFO     | cat /etc/os-release:
[2026-01-18 13:49:08] NAME="CentOS Linux"
[2026-01-18 13:49:08] VERSION="7 (Core)"
[2026-01-18 13:49:08] ID="centos"
[2026-01-18 13:49:08] ID_LIKE="rhel fedora"
[2026-01-18 13:49:08] VERSION_ID="7"
[2026-01-18 13:49:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-18 13:49:08] ANSI_COLOR="0;31"
[2026-01-18 13:49:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-18 13:49:08] HOME_URL="https://www.centos.org/"
[2026-01-18 13:49:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-18 13:49:08] 
[2026-01-18 13:49:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-18 13:49:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-18 13:49:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-18 13:49:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-18 13:49:08] 
[2026-01-18 13:49:08] 2026-01-18 18:48:23,423 | INFO     | ***************************************
[2026-01-18 13:49:08] 2026-01-18 18:48:23,926 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-18 13:49:08] 2026-01-18 18:48:23,943 | INFO     | sufficient remaining disk space (63805849600 B)
[2026-01-18 13:49:08] 2026-01-18 18:48:23,944 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-18 13:49:08] 2026-01-18 18:48:23,944 | INFO     | current server update state: UPDATING_FINAL
[2026-01-18 13:49:08] 2026-01-18 18:48:23,944 | INFO     | update_server=False
[2026-01-18 13:49:08] 2026-01-18 18:48:23,945 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-18 13:49:08] 2026-01-18 18:48:24,238 | INFO     | all data control threads have been joined
[2026-01-18 13:49:08] 2026-01-18 18:48:24,926 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-18 13:49:08] 2026-01-18 18:48:24,926 | INFO     | aborting loop
[2026-01-18 13:49:08] 2026-01-18 18:48:24,950 | INFO     | [job] retrieve thread has finished
[2026-01-18 13:49:08] 2026-01-18 18:48:24,980 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-18 13:49:08] 2026-01-18 18:48:25,103 | INFO     | all payload control threads have been joined
[2026-01-18 13:49:08] 2026-01-18 18:48:25,115 | INFO     | [payload] validate_post thread has finished
[2026-01-18 13:49:08] 2026-01-18 18:48:25,178 | INFO     | [payload] validate_pre thread has finished
[2026-01-18 13:49:08] 2026-01-18 18:48:25,210 | INFO     | [payload] execute_payloads thread has finished
[2026-01-18 13:49:08] 2026-01-18 18:48:25,243 | INFO     | [data] control thread has finished
[2026-01-18 13:49:08] 2026-01-18 18:48:25,243 | INFO     | [payload] failed_post thread has finished
[2026-01-18 13:49:08] 2026-01-18 18:48:25,444 | INFO     | [job] create_data_payload thread has finished
[2026-01-18 13:49:08] 2026-01-18 18:48:25,506 | INFO     | all job control threads have been joined
[2026-01-18 13:49:08] 2026-01-18 18:48:25,672 | INFO     | [data] copytool_in thread has finished
[2026-01-18 13:49:08] 2026-01-18 18:48:25,700 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-18 13:49:08] 2026-01-18 18:48:25,933 | INFO     | [job] job monitor thread has finished
[2026-01-18 13:49:08] 2026-01-18 18:48:26,057 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-18 13:49:08] 2026-01-18 18:48:26,130 | INFO     | [payload] control thread has finished
[2026-01-18 13:49:08] 2026-01-18 18:48:26,315 | INFO     | [job] validate thread has finished
[2026-01-18 13:49:08] 2026-01-18 18:48:26,401 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-18 13:49:08] 2026-01-18 18:48:26,512 | INFO     | [job] control thread has finished
[2026-01-18 13:49:08] 2026-01-18 18:48:26,986 | INFO     | [data] copytool_out thread has finished
[2026-01-18 13:49:08] 2026-01-18 18:48:27,407 | INFO     | [job] queue monitor thread has finished
[2026-01-18 13:49:08] 2026-01-18 18:48:29,706 | INFO     | [data] queue_monitor thread has finished
[2026-01-18 13:49:08] 2026-01-18 18:48:54,727 | INFO     | PID=3303267 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-18 13:49:08] 2026-01-18 18:48:54,736 | INFO     | .. there are 7 such processes running
[2026-01-18 13:49:08] 2026-01-18 18:48:54,737 | INFO     | found 0 job(s) in 20 queues
[2026-01-18 13:49:08] 2026-01-18 18:48:54,737 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-18 13:49:08] 2026-01-18 18:48:54,737 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-18 13:49:08] 2026-01-18 18:49:01,357 | INFO     | [monitor] cgroup control has ended
[2026-01-18 13:49:08] 2026-01-18 18:49:03,025 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140610844108608)>', '<ExcThread(monitor, started 140610493204224)>']
[2026-01-18 13:49:08] 2026-01-18 18:49:03,781 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-18 13:49:08] 2026-01-18 18:49:03,782 | INFO     | [monitor] control thread has ended
[2026-01-18 13:49:08] 2026-01-18 18:49:08,050 | INFO     | all workflow threads have been joined
[2026-01-18 13:49:08] 2026-01-18 18:49:08,051 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-18 13:49:08] 2026-01-18 18:49:08,051 | INFO     | traces error code: 0
[2026-01-18 13:49:08] 2026-01-18 18:49:08,051 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-18 13:49:08] 2026-01-18 18:49:08,214 [wrapper] ==== pilot stdout END ====
[2026-01-18 13:49:08] 2026-01-18 18:49:08,217 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-18 13:49:08] 2026-01-18 18:49:08,219 [wrapper] pilotpid: 3303267
[2026-01-18 13:49:08] 2026-01-18 18:49:08,222 [wrapper] Pilot exit status: 0
[2026-01-18 13:49:08] 2026-01-18 18:49:08,232 [wrapper] pandaids: 6969253874
[2026-01-18 13:49:08] 2026-01-18 18:49:08,296 [wrapper] cleanup supervisor_pilot 3663223 3303268
[2026-01-18 13:49:08] 2026-01-18 18:49:08,300 [wrapper] Test setup, not cleaning
[2026-01-18 13:49:08] 2026-01-18 18:49:08,303 [wrapper] apfmon messages muted
[2026-01-18 13:49:08] 2026-01-18 18:49:08,305 [wrapper] ==== wrapper stdout END ====
[2026-01-18 13:49:08] 2026-01-18 18:49:08,308 [wrapper] ==== wrapper stderr END ====
[2026-01-18 13:49:08]  *** Error codes and diagnostics ***
[2026-01-18 13:49:08]     "exeErrorCode": 0,
[2026-01-18 13:49:08]     "exeErrorDiag": "",
[2026-01-18 13:49:08]     "pilotErrorCode": 0,
[2026-01-18 13:49:08]     "pilotErrorDiag": "",
[2026-01-18 13:49:08]  *** Listing of results directory ***
[2026-01-18 13:49:08] total 744496
[2026-01-18 13:49:08] -rw-r--r--. 1 boincer umatlas      5112 Jan 13 16:45 queuedata.json
[2026-01-18 13:49:08] -rw-r--r--. 1 boincer umatlas    579449 Jan 13 16:45 pilot3.tar.gz
[2026-01-18 13:49:08] -rwx------. 1 boincer umatlas     36322 Jan 13 16:45 runpilot2-wrapper.sh
[2026-01-18 13:49:08] -rw-r--r--. 1 boincer umatlas       100 Jan 18 09:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-18 13:49:08] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 18 09:36 run_atlas
[2026-01-18 13:49:08] -rw-r--r--. 1 boincer umatlas       105 Jan 18 09:36 job.xml
[2026-01-18 13:49:08] -rw-r--r--. 2 boincer umatlas 596440949 Jan 18 09:36 EVNT.32794306._000010.pool.root.1
[2026-01-18 13:49:08] drwxrwx--x. 2 boincer umatlas      4096 Jan 18 09:36 shared
[2026-01-18 13:49:08] -rw-r--r--. 2 boincer umatlas    592386 Jan 18 09:36 input.tar.gz
[2026-01-18 13:49:08] -rw-r--r--. 2 boincer umatlas     15847 Jan 18 09:36 start_atlas.sh
[2026-01-18 13:49:08] -rw-r--r--. 1 boincer umatlas         0 Jan 18 09:36 boinc_lockfile
[2026-01-18 13:49:08] -rw-r--r--. 1 boincer umatlas      2500 Jan 18 09:36 pandaJob.out
[2026-01-18 13:49:08] -rw-------. 1 boincer umatlas        57 Jan 18 09:36 setup.sh.local
[2026-01-18 13:49:08] -rw-------. 1 boincer umatlas   1002727 Jan 18 09:37 agis_schedconf.cvmfs.json
[2026-01-18 13:49:08] drwx------. 5 boincer umatlas      4096 Jan 18 09:37 pilot3
[2026-01-18 13:49:08] -rw-------. 1 boincer umatlas 157252122 Jan 18 13:47 HITS.48215263._000246.pool.root.1
[2026-01-18 13:49:08] -rw-r--r--. 1 boincer umatlas       531 Jan 18 13:47 boinc_task_state.xml
[2026-01-18 13:49:08] -rw-r--r--. 1 boincer umatlas      6615 Jan 18 13:47 init_data.xml
[2026-01-18 13:49:08] -rw-------. 1 boincer umatlas      1036 Jan 18 13:48 memory_monitor_summary.json
[2026-01-18 13:49:08] -rw-------. 1 boincer umatlas        95 Jan 18 13:48 pilot_heartbeat.json
[2026-01-18 13:49:08] -rw-------. 1 boincer umatlas   1516246 Jan 18 13:48 agis_ddmendpoints.agis.ALL.json
[2026-01-18 13:49:08] -rw-------. 1 boincer umatlas    529375 Jan 18 13:48 log.48215263._000246.job.log.tgz.1
[2026-01-18 13:49:08] -rw-------. 1 boincer umatlas      7811 Jan 18 13:48 heartbeat.json
[2026-01-18 13:49:08] -rw-r--r--. 1 boincer umatlas      8192 Jan 18 13:48 boinc_mmap_file
[2026-01-18 13:49:08] -rw-r--r--. 1 boincer umatlas        28 Jan 18 13:48 wrapper_checkpoint.txt
[2026-01-18 13:49:08] -rw-------. 1 boincer umatlas      4823 Jan 18 13:49 pilotlog.txt
[2026-01-18 13:49:08] -rw-------. 1 boincer umatlas   1841612 Jan 18 13:49 log.48215263._000246.job.log.1
[2026-01-18 13:49:08] -rw-------. 1 boincer umatlas       357 Jan 18 13:49 output.list
[2026-01-18 13:49:08] -rw-r--r--. 1 boincer umatlas       620 Jan 18 13:49 runtime_log
[2026-01-18 13:49:08] -rw-------. 1 boincer umatlas   2385920 Jan 18 13:49 result.tar.gz
[2026-01-18 13:49:08] -rw-r--r--. 1 boincer umatlas      9345 Jan 18 13:49 runtime_log.err
[2026-01-18 13:49:08] -rw-------. 1 boincer umatlas       656 Jan 18 13:49 cRlNDmBO1z8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm5CiKDm7CEDZn.diag
[2026-01-18 13:49:08] -rw-r--r--. 1 boincer umatlas     21560 Jan 18 13:49 stderr.txt
[2026-01-18 13:49:08] HITS file was successfully produced:
[2026-01-18 13:49:08] -rw-------. 1 boincer umatlas 157252122 Jan 18 13:47 shared/HITS.pool.root.1
[2026-01-18 13:49:08]  *** Contents of shared directory: ***
[2026-01-18 13:49:08] total 738968
[2026-01-18 13:49:08] -rw-r--r--. 2 boincer umatlas 596440949 Jan 18 09:36 ATLAS.root_0
[2026-01-18 13:49:08] -rw-r--r--. 2 boincer umatlas    592386 Jan 18 09:36 input.tar.gz
[2026-01-18 13:49:08] -rw-r--r--. 2 boincer umatlas     15847 Jan 18 09:36 start_atlas.sh
[2026-01-18 13:49:08] -rw-------. 1 boincer umatlas 157252122 Jan 18 13:47 HITS.pool.root.1
[2026-01-18 13:49:08] -rw-------. 1 boincer umatlas   2385920 Jan 18 13:49 result.tar.gz
13:49:10 (3299042): run_atlas exited; CPU time 40078.267883
13:49:10 (3299042): called boinc_finish(0)

</stderr_txt>
]]>

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