Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:48:10 (3957039): wrapper (7.7.26015): starting
21:48:10 (3957039): wrapper: running run_atlas (--nthreads 9)
[2026-01-17 21:48:10] Arguments: --nthreads 9
[2026-01-17 21:48:10] Threads: 9
[2026-01-17 21:48:10] Checking for CVMFS
[2026-01-17 21:48:11] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-17 21:48:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-17 21:48:11] Running cvmfs_config stat atlas.cern.ch
[2026-01-17 21:48:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-17 21:48:11] 2.13.3.0 14328 105768 158176 155262 1 99 36220453 40960000 23467 16776704 0 1070265655 99.708 835124226 49873 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-17 21:48:11] CVMFS is ok
[2026-01-17 21:48:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-17 21:48:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-17 21:48:11] Further information can be found at the LHC@home message board.
[2026-01-17 21:48:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-17 21:48:11] Checking for apptainer binary...
[2026-01-17 21:48:11] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-17 21:48:11] Running /usr/bin/apptainer --version
[2026-01-17 21:48:12] apptainer version 1.4.5-2.el9
[2026-01-17 21:48:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-17 21:48:12] c8-16-2.aglt2.org
[2026-01-17 21:48:12] apptainer works
[2026-01-17 21:48:12] Set ATHENA_PROC_NUMBER=9
[2026-01-17 21:48:12] Set ATHENA_CORE_NUMBER=9
[2026-01-17 21:48:12] Starting ATLAS job with PandaID=6974129371
[2026-01-17 21:48:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-17 22:35:01]  *** The last 200 lines of the pilot log: ***
[2026-01-17 22:35:01]  ddmendpoint_alt=None
[2026-01-17 22:35:01]  direct_access_lan=False
[2026-01-17 22:35:01]  direct_access_wan=False
[2026-01-17 22:35:01]  domain=
[2026-01-17 22:35:01]  filesize=1265329
[2026-01-17 22:35:01]  filetype=log
[2026-01-17 22:35:01]  guid=a5edddff-2957-4232-845c-b6fc1da454c4
[2026-01-17 22:35:01]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-17 22:35:01]  is_altstaged=None
[2026-01-17 22:35:01]  is_tar=False
[2026-01-17 22:35:01]  lfn=log.47962010._003717.job.log.tgz.1
[2026-01-17 22:35:01]  mtime=0
[2026-01-17 22:35:01]  protocol_id=None
[2026-01-17 22:35:01]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-17 22:35:01]  replicas=None
[2026-01-17 22:35:01]  scope=mc16_13TeV
[2026-01-17 22:35:01]  status=None
[2026-01-17 22:35:01]  status_code=0
[2026-01-17 22:35:01]  storage_token=
[2026-01-17 22:35:01]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6974129371/log.47962010._003717.job.log.tgz.1
[2026-01-17 22:35:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/b1/be/log.47962010._003717.job.log.tgz.1
[2026-01-17 22:35:01]  workdir=None
[2026-01-17 22:35:01] ]
[2026-01-17 22:35:01] 2026-01-18 03:34:19,419 | INFO     | transferring file log.47962010._003717.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6974129371/log.47962010._003717.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-17 22:35:01] 2026-01-18 03:34:19,420 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6974129371/log.47962010._003717.job.log.tgz.1 /tmp/boinchome/slots/0/log.47962010._003717.job
[2026-01-17 22:35:01] 2026-01-18 03:34:19,437 | INFO     | adding to output.list: log.47962010._003717.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/b1/be/log.47962010._003717.job.log.tgz.
[2026-01-17 22:35:01] 2026-01-18 03:34:19,438 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-17 22:35:01] 2026-01-18 03:34:19,438 | INFO     | summary of transferred files:
[2026-01-17 22:35:01] 2026-01-18 03:34:19,438 | INFO     |  -- lfn=log.47962010._003717.job.log.tgz.1, status_code=0, status=transferred
[2026-01-17 22:35:01] 2026-01-18 03:34:19,438 | INFO     | stage-out finished correctly
[2026-01-17 22:35:01] 2026-01-18 03:34:20,982 | INFO     | time since job start (2730s) is within the limit (349056.0s)
[2026-01-17 22:35:01] 2026-01-18 03:34:21,192 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-17 22:35:01] 2026-01-18 03:34:21,245 | INFO     | job 6974129371 has state=finished
[2026-01-17 22:35:01] 2026-01-18 03:34:21,245 | INFO     | preparing for final server update for job 6974129371 in state='finished'
[2026-01-17 22:35:01] 2026-01-18 03:34:21,245 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-6974129371/jobReport.json
[2026-01-17 22:35:01] 2026-01-18 03:34:21,247 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-01-17 22:35:01] 2026-01-18 03:34:21,247 | INFO     | this job has now completed (state=finished)
[2026-01-17 22:35:01] 2026-01-18 03:34:21,247 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-17 22:35:01] 2026-01-18 03:34:21,247 | INFO     | log transfer has been attempted: DONE
[2026-01-17 22:35:01] 2026-01-18 03:34:21,247 | INFO     | job 6974129371 has finished - writing final server update
[2026-01-17 22:35:01] 2026-01-18 03:34:21,247 | INFO     | total number of processed events: 50 (read)
[2026-01-17 22:35:01] 2026-01-18 03:34:21,259 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6974129371/memory_monitor_summary.json (trf name=prmon)
[2026-01-17 22:35:01] 2026-01-18 03:34:21,260 | INFO     | extracted standard info from prmon json
[2026-01-17 22:35:01] 2026-01-18 03:34:21,260 | INFO     | extracted standard memory fields from prmon json
[2026-01-17 22:35:01] 2026-01-18 03:34:21,260 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-17 22:35:01] 2026-01-18 03:34:21,261 | INFO     | fitting pss+swap vs Time
[2026-01-17 22:35:01] 2026-01-18 03:34:21,261 | INFO     | sum of square deviations: 16976644.315789483
[2026-01-17 22:35:01] 2026-01-18 03:34:21,261 | INFO     | sum of deviations: -3063855325.9473686
[2026-01-17 22:35:01] 2026-01-18 03:34:21,261 | INFO     | mean x: 1768706005.2105262
[2026-01-17 22:35:01] 2026-01-18 03:34:21,261 | INFO     | mean y: 2502555.3684210526
[2026-01-17 22:35:01] 2026-01-18 03:34:21,261 | INFO     | intersect: 319209244081.97595
[2026-01-17 22:35:01] 2026-01-18 03:34:21,261 | INFO     | chi2: 0.5408066649017277
[2026-01-17 22:35:01] 2026-01-18 03:34:21,261 | INFO     | current memory leak: -180.47 B/s (using 38 data points, chi2=0.54)
[2026-01-17 22:35:01] 2026-01-18 03:34:21,261 | INFO     | could have reported an average CPU frequency of 3755 MHz (5 samples)
[2026-01-17 22:35:01] 2026-01-18 03:34:21,262 | INFO     | ..............................
[2026-01-17 22:35:01] 2026-01-18 03:34:21,262 | INFO     | . Timing measurements:
[2026-01-17 22:35:01] 2026-01-18 03:34:21,262 | INFO     | . get job = 0 s
[2026-01-17 22:35:01] 2026-01-18 03:34:21,262 | INFO     | . initial setup = 14 s
[2026-01-17 22:35:01] 2026-01-18 03:34:21,262 | INFO     | . payload setup = 14 s
[2026-01-17 22:35:01] 2026-01-18 03:34:21,262 | INFO     | . stage-in = 0 s
[2026-01-17 22:35:01] 2026-01-18 03:34:21,262 | INFO     | . payload execution = 2698 s
[2026-01-17 22:35:01] 2026-01-18 03:34:21,262 | INFO     | . stage-out = 0 s
[2026-01-17 22:35:01] 2026-01-18 03:34:21,262 | INFO     | . log creation = 0 s
[2026-01-17 22:35:01] 2026-01-18 03:34:21,262 | INFO     | ..............................
[2026-01-17 22:35:01] 2026-01-18 03:34:21,309 | INFO     | 
[2026-01-17 22:35:01] 2026-01-18 03:34:21,309 | INFO     | job summary report
[2026-01-17 22:35:01] 2026-01-18 03:34:21,309 | INFO     | --------------------------------------------------
[2026-01-17 22:35:01] 2026-01-18 03:34:21,309 | INFO     | PanDA job id: 6974129371
[2026-01-17 22:35:01] 2026-01-18 03:34:21,310 | INFO     | task id: 47962010
[2026-01-17 22:35:01] 2026-01-18 03:34:21,310 | INFO     | errors: (none)
[2026-01-17 22:35:01] 2026-01-18 03:34:21,310 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-17 22:35:01] 2026-01-18 03:34:21,310 | INFO     | pilot state: finished 
[2026-01-17 22:35:01] 2026-01-18 03:34:21,310 | INFO     | transexitcode: 0
[2026-01-17 22:35:01] 2026-01-18 03:34:21,310 | INFO     | exeerrorcode: 0
[2026-01-17 22:35:01] 2026-01-18 03:34:21,310 | INFO     | exeerrordiag: 
[2026-01-17 22:35:01] 2026-01-18 03:34:21,310 | INFO     | exitcode: 0
[2026-01-17 22:35:01] 2026-01-18 03:34:21,310 | INFO     | exitmsg: OK
[2026-01-17 22:35:01] 2026-01-18 03:34:21,310 | INFO     | cpuconsumptiontime: 9134 s
[2026-01-17 22:35:01] 2026-01-18 03:34:21,310 | INFO     | nevents: 50
[2026-01-17 22:35:01] 2026-01-18 03:34:21,310 | INFO     | neventsw: 0
[2026-01-17 22:35:01] 2026-01-18 03:34:21,310 | INFO     | pid: 3983509
[2026-01-17 22:35:01] 2026-01-18 03:34:21,310 | INFO     | pgrp: 3983509
[2026-01-17 22:35:01] 2026-01-18 03:34:21,310 | INFO     | corecount: 9
[2026-01-17 22:35:01] 2026-01-18 03:34:21,310 | INFO     | event service: False
[2026-01-17 22:35:01] 2026-01-18 03:34:21,310 | INFO     | sizes: {0: 2284830, 11: 2284830, 2716: 2310878, 2718: 2319872, 2719: 2320206}
[2026-01-17 22:35:01] 2026-01-18 03:34:21,310 | INFO     | --------------------------------------------------
[2026-01-17 22:35:01] 2026-01-18 03:34:21,310 | INFO     | 
[2026-01-17 22:35:01] 2026-01-18 03:34:21,310 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-17 22:35:01] 2026-01-18 03:34:21,332 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-17 22:35:01] 2026-01-18 03:34:21,332 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-17 22:35:01] 2026-01-18 03:34:21,332 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-17 22:35:01] 2026-01-18 03:34:21,332 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-17 22:35:01] 2026-01-18 03:34:21,332 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-17 22:35:01] 2026-01-18 03:34:21,332 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-17 22:35:01] 2026-01-18 03:34:21,332 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-17 22:35:01] 2026-01-18 03:34:21,332 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-17 22:35:01] 2026-01-18 03:34:21,332 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-17 22:35:01] 2026-01-18 03:34:21,332 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-17 22:35:01] 2026-01-18 03:34:21,332 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-17 22:35:01] 2026-01-18 03:34:21,332 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-17 22:35:01] 2026-01-18 03:34:21,332 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-17 22:35:01] 2026-01-18 03:34:21,332 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-17 22:35:01] 2026-01-18 03:34:21,332 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-17 22:35:01] 2026-01-18 03:34:21,332 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-17 22:35:01] 2026-01-18 03:34:21,333 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-17 22:35:01] 2026-01-18 03:34:21,333 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-17 22:35:01] 2026-01-18 03:34:21,333 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-17 22:35:01] 2026-01-18 03:34:21,333 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-17 22:35:01] 2026-01-18 03:34:21,333 | INFO     | job 6974129371 has completed (purged errors)
[2026-01-17 22:35:01] 2026-01-18 03:34:21,333 | INFO     | overall cleanup function is called
[2026-01-17 22:35:01] 2026-01-18 03:34:22,342 | INFO     | --- collectZombieJob: --- 10, [3983509]
[2026-01-17 22:35:01] 2026-01-18 03:34:22,342 | INFO     | zombie collector waiting for pid 3983509
[2026-01-17 22:35:01] 2026-01-18 03:34:22,342 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-17 22:35:01] 2026-01-18 03:34:22,342 | INFO     | collected zombie processes
[2026-01-17 22:35:01] 2026-01-18 03:34:22,342 | INFO     | will attempt to kill all subprocesses of pid=3983509
[2026-01-17 22:35:01] 2026-01-18 03:34:22,743 | INFO     | process IDs to be killed: [3983509] (in reverse order)
[2026-01-17 22:35:01] 2026-01-18 03:34:22,892 | WARNING  | found no corresponding commands to process id(s)
[2026-01-17 22:35:01] 2026-01-18 03:34:22,892 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-17 22:35:01] 2026-01-18 03:34:22,917 | INFO     | did not find any defunct processes belonging to 3983509
[2026-01-17 22:35:01] 2026-01-18 03:34:22,944 | INFO     | did not find any defunct processes belonging to 3983509
[2026-01-17 22:35:01] 2026-01-18 03:34:22,944 | INFO     | ready for new job
[2026-01-17 22:35:01] 2026-01-18 03:34:22,944 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-17 22:35:01] 2026-01-18 03:34:22,945 | INFO     | **************************************
[2026-01-17 22:35:01] 2026-01-18 03:34:22,946 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-17 22:35:01] 2026-01-18 03:34:22,946 | INFO     | **************************************
[2026-01-17 22:35:01] 2026-01-18 03:34:22,946 | INFO     | 
[2026-01-17 22:35:01] 2026-01-18 03:34:22,951 | INFO     | architecture information:
[2026-01-17 22:35:01] 2026-01-18 03:34:22,951 | INFO     | executing command: cat /etc/os-release
[2026-01-17 22:35:01] 2026-01-18 03:34:22,967 | INFO     | cat /etc/os-release:
[2026-01-17 22:35:01] NAME="CentOS Linux"
[2026-01-17 22:35:01] VERSION="7 (Core)"
[2026-01-17 22:35:01] ID="centos"
[2026-01-17 22:35:01] ID_LIKE="rhel fedora"
[2026-01-17 22:35:01] VERSION_ID="7"
[2026-01-17 22:35:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-17 22:35:01] ANSI_COLOR="0;31"
[2026-01-17 22:35:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-17 22:35:01] HOME_URL="https://www.centos.org/"
[2026-01-17 22:35:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-17 22:35:01] 
[2026-01-17 22:35:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-17 22:35:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-17 22:35:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-17 22:35:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-17 22:35:01] 
[2026-01-17 22:35:01] 2026-01-18 03:34:22,967 | INFO     | **************************************
[2026-01-17 22:35:01] 2026-01-18 03:34:23,469 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-17 22:35:01] 2026-01-18 03:34:23,487 | INFO     | sufficient remaining disk space (173519405056 B)
[2026-01-17 22:35:01] 2026-01-18 03:34:23,488 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-17 22:35:01] 2026-01-18 03:34:23,488 | INFO     | current server update state: UPDATING_FINAL
[2026-01-17 22:35:01] 2026-01-18 03:34:23,488 | INFO     | update_server=False
[2026-01-17 22:35:01] 2026-01-18 03:34:23,488 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-17 22:35:01] 2026-01-18 03:34:23,489 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-17 22:35:01] 2026-01-18 03:34:23,489 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-17 22:35:01] 2026-01-18 03:34:23,489 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-17 22:35:01] 2026-01-18 03:34:23,489 | INFO     | aborting loop
[2026-01-17 22:35:01] 2026-01-18 03:34:23,637 | INFO     | all payload control threads have been joined
[2026-01-17 22:35:01] 2026-01-18 03:34:23,729 | INFO     | all data control threads have been joined
[2026-01-17 22:35:01] 2026-01-18 03:34:24,170 | INFO     | all job control threads have been joined
[2026-01-17 22:35:01] 2026-01-18 03:34:24,492 | INFO     | [job] job monitor thread has finished
[2026-01-17 22:35:01] 2026-01-18 03:34:24,493 | INFO     | [job] retrieve thread has finished
[2026-01-17 22:35:01] 2026-01-18 03:34:24,524 | INFO     | [data] copytool_in thread has finished
[2026-01-17 22:35:01] 2026-01-18 03:34:24,541 | INFO     | [job] create_data_payload thread has finished
[2026-01-17 22:35:01] 2026-01-18 03:34:24,642 | INFO     | [payload] control thread has finished
[2026-01-17 22:35:01] 2026-01-18 03:34:24,661 | INFO     | [payload] execute_payloads thread has finished
[2026-01-17 22:35:01] 2026-01-18 03:34:24,730 | INFO     | [data] control thread has finished
[2026-01-17 22:35:01] 2026-01-18 03:34:25,114 | INFO     | [payload] validate_post thread has finished
[2026-01-17 22:35:01] 2026-01-18 03:34:25,174 | INFO     | [job] control thread has finished
[2026-01-17 22:35:01] 2026-01-18 03:34:25,495 | INFO     | [data] copytool_out thread has finished
[2026-01-17 22:35:01] 2026-01-18 03:34:25,551 | INFO     | [payload] validate_pre thread has finished
[2026-01-17 22:35:01] 2026-01-18 03:34:25,570 | INFO     | [job] validate thread has finished
[2026-01-17 22:35:01] 2026-01-18 03:34:25,632 | INFO     | [payload] failed_post thread has finished
[2026-01-17 22:35:01] 2026-01-18 03:34:26,317 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-17 22:35:01] 2026-01-18 03:34:27,322 | INFO     | [job] queue monitor thread has finished
[2026-01-17 22:35:01] 2026-01-18 03:34:27,495 | INFO     | [data] queue_monitor thread has finished
[2026-01-17 22:35:01] 2026-01-18 03:34:34,454 | INFO     | job.realtimelogging is not enabled
[2026-01-17 22:35:01] 2026-01-18 03:34:35,459 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-17 22:35:01] 2026-01-18 03:34:54,518 | INFO     | [monitor] cgroup control has ended
[2026-01-17 22:35:01] 2026-01-18 03:34:54,581 | INFO     | PID=3963807 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-17 22:35:01] 2026-01-18 03:34:54,581 | INFO     | .. there are 18 such processes running
[2026-01-17 22:35:01] 2026-01-18 03:34:54,582 | INFO     | found 0 job(s) in 20 queues
[2026-01-17 22:35:01] 2026-01-18 03:34:54,582 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-17 22:35:01] 2026-01-18 03:34:54,582 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-17 22:35:01] 2026-01-18 03:34:55,986 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139870440326976)>', '<ExcThread(monitor, started 139869829457664)>']
[2026-01-17 22:35:01] 2026-01-18 03:34:56,591 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-17 22:35:01] 2026-01-18 03:34:56,591 | INFO     | [monitor] control thread has ended
[2026-01-17 22:35:01] 2026-01-18 03:35:01,004 | INFO     | all workflow threads have been joined
[2026-01-17 22:35:01] 2026-01-18 03:35:01,004 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-17 22:35:01] 2026-01-18 03:35:01,005 | INFO     | traces error code: 0
[2026-01-17 22:35:01] 2026-01-18 03:35:01,005 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-17 22:35:01] 2026-01-18 03:35:01,184 [wrapper] ==== pilot stdout END ====
[2026-01-17 22:35:01] 2026-01-18 03:35:01,189 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-17 22:35:01] 2026-01-18 03:35:01,192 [wrapper] pilotpid: 3963807
[2026-01-17 22:35:01] 2026-01-18 03:35:01,195 [wrapper] Pilot exit status: 0
[2026-01-17 22:35:01] 2026-01-18 03:35:01,212 [wrapper] pandaids: 6974129371
[2026-01-17 22:35:01] 2026-01-18 03:35:01,336 [wrapper] cleanup supervisor_pilot   83248 3963808
[2026-01-17 22:35:01] 2026-01-18 03:35:01,340 [wrapper] Test setup, not cleaning
[2026-01-17 22:35:01] 2026-01-18 03:35:01,343 [wrapper] apfmon messages muted
[2026-01-17 22:35:01] 2026-01-18 03:35:01,346 [wrapper] ==== wrapper stdout END ====
[2026-01-17 22:35:01] 2026-01-18 03:35:01,349 [wrapper] ==== wrapper stderr END ====
[2026-01-17 22:35:01]  *** Error codes and diagnostics ***
[2026-01-17 22:35:01]     "exeErrorCode": 0,
[2026-01-17 22:35:01]     "exeErrorDiag": "",
[2026-01-17 22:35:01]     "pilotErrorCode": 0,
[2026-01-17 22:35:01]     "pilotErrorDiag": "",
[2026-01-17 22:35:01]  *** Listing of results directory ***
[2026-01-17 22:35:01] total 431716
[2026-01-17 22:35:01] -rw-r--r--. 1 boincer umatlas    584422 Jan 17 21:08 pilot3.tar.gz
[2026-01-17 22:35:01] -rwx------. 1 boincer umatlas     36322 Jan 17 21:47 runpilot2-wrapper.sh
[2026-01-17 22:35:01] -rw-r--r--. 1 boincer umatlas      5111 Jan 17 21:47 queuedata.json
[2026-01-17 22:35:01] -rw-r--r--. 1 boincer umatlas       100 Jan 17 21:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-17 22:35:01] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 17 21:48 run_atlas
[2026-01-17 22:35:01] -rw-r--r--. 1 boincer umatlas       105 Jan 17 21:48 job.xml
[2026-01-17 22:35:01] -rw-r--r--. 2 boincer umatlas 392261679 Jan 17 21:48 EVNT.47962006._000078.pool.root.1
[2026-01-17 22:35:01] -rw-r--r--. 2 boincer umatlas    597968 Jan 17 21:48 input.tar.gz
[2026-01-17 22:35:01] -rw-r--r--. 2 boincer umatlas     15845 Jan 17 21:48 start_atlas.sh
[2026-01-17 22:35:01] drwxrwx--x. 2 boincer umatlas      4096 Jan 17 21:48 shared
[2026-01-17 22:35:01] -rw-r--r--. 1 boincer umatlas         0 Jan 17 21:48 boinc_lockfile
[2026-01-17 22:35:01] -rw-r--r--. 1 boincer umatlas      2889 Jan 17 21:48 pandaJob.out
[2026-01-17 22:35:01] -rw-------. 1 boincer umatlas        57 Jan 17 21:48 setup.sh.local
[2026-01-17 22:35:01] -rw-------. 1 boincer umatlas   1004175 Jan 17 21:48 agis_schedconf.cvmfs.json
[2026-01-17 22:35:01] -rw-------. 1 boincer umatlas   1516246 Jan 17 21:48 agis_ddmendpoints.agis.ALL.json
[2026-01-17 22:35:01] -rw-------. 1 boincer umatlas       425 Jan 17 21:48 workernode_map.json
[2026-01-17 22:35:01] drwx------. 5 boincer umatlas      4096 Jan 17 21:48 pilot3
[2026-01-17 22:35:01] -rw-r--r--. 1 boincer umatlas       528 Jan 17 22:26 boinc_task_state.xml
[2026-01-17 22:35:01] -rw-r--r--. 1 boincer umatlas      7170 Jan 17 22:31 init_data.xml
[2026-01-17 22:35:01] -rw-------. 1 boincer umatlas  42532802 Jan 17 22:34 HITS.47962010._003717.pool.root.1
[2026-01-17 22:35:01] -rw-------. 1 boincer umatlas      1045 Jan 17 22:34 memory_monitor_summary.json
[2026-01-17 22:35:01] -rw-------. 1 boincer umatlas   1265329 Jan 17 22:34 log.47962010._003717.job.log.tgz.1
[2026-01-17 22:35:01] -rw-------. 1 boincer umatlas      6866 Jan 17 22:34 heartbeat.json
[2026-01-17 22:35:01] -rw-------. 1 boincer umatlas        95 Jan 17 22:34 pilot_heartbeat.json
[2026-01-17 22:35:01] -rw-r--r--. 1 boincer umatlas      8192 Jan 17 22:34 boinc_mmap_file
[2026-01-17 22:35:01] -rw-r--r--. 1 boincer umatlas        26 Jan 17 22:34 wrapper_checkpoint.txt
[2026-01-17 22:35:01] -rw-------. 1 boincer umatlas      4893 Jan 17 22:35 pilotlog.txt
[2026-01-17 22:35:01] -rw-------. 1 boincer umatlas    403924 Jan 17 22:35 log.47962010._003717.job.log.1
[2026-01-17 22:35:01] -rw-------. 1 boincer umatlas       353 Jan 17 22:35 output.list
[2026-01-17 22:35:01] -rw-r--r--. 1 boincer umatlas       620 Jan 17 22:35 runtime_log
[2026-01-17 22:35:01] -rw-------. 1 boincer umatlas   1689600 Jan 17 22:35 result.tar.gz
[2026-01-17 22:35:01] -rw-r--r--. 1 boincer umatlas      9336 Jan 17 22:35 runtime_log.err
[2026-01-17 22:35:01] -rw-------. 1 boincer umatlas       653 Jan 17 22:35 qyWNDm1zX18nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmPHvKDmk4rTtn.diag
[2026-01-17 22:35:01] -rw-r--r--. 1 boincer umatlas     20901 Jan 17 22:35 stderr.txt
[2026-01-17 22:35:01] HITS file was successfully produced:
[2026-01-17 22:35:01] -rw-------. 1 boincer umatlas 42532802 Jan 17 22:34 shared/HITS.pool.root.1
[2026-01-17 22:35:01]  *** Contents of shared directory: ***
[2026-01-17 22:35:01] total 426864
[2026-01-17 22:35:01] -rw-r--r--. 2 boincer umatlas 392261679 Jan 17 21:48 ATLAS.root_0
[2026-01-17 22:35:01] -rw-r--r--. 2 boincer umatlas    597968 Jan 17 21:48 input.tar.gz
[2026-01-17 22:35:01] -rw-r--r--. 2 boincer umatlas     15845 Jan 17 21:48 start_atlas.sh
[2026-01-17 22:35:01] -rw-------. 1 boincer umatlas  42532802 Jan 17 22:34 HITS.pool.root.1
[2026-01-17 22:35:01] -rw-------. 1 boincer umatlas   1689600 Jan 17 22:35 result.tar.gz
22:35:02 (3957039): run_atlas exited; CPU time 9133.962500
22:35:02 (3957039): called boinc_finish(0)

</stderr_txt>
]]>

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