Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:18:36 (2065479): wrapper (7.7.26015): starting
18:18:36 (2065479): wrapper: running run_atlas (--nthreads 8)
[2026-01-17 18:18:36] Arguments: --nthreads 8
[2026-01-17 18:18:36] Threads: 8
[2026-01-17 18:18:36] Checking for CVMFS
[2026-01-17 18:18:36] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-17 18:18:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-17 18:18:36] Running cvmfs_config stat atlas.cern.ch
[2026-01-17 18:18:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-17 18:18:37] 2.13.3.0 5210 66241 424924 155259 1 54 29642814 32935937 14723 16776704 0 152219545 99.469 210985400 32817 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-17 18:18:37] CVMFS is ok
[2026-01-17 18:18:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-17 18:18:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-17 18:18:37] Further information can be found at the LHC@home message board.
[2026-01-17 18:18:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-17 18:18:37] Checking for apptainer binary...
[2026-01-17 18:18:37] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-17 18:18:37] Running /usr/bin/apptainer --version
[2026-01-17 18:18:37] apptainer version 1.4.5-2.el9
[2026-01-17 18:18:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-17 18:18:38] c6-1-26-2.aglt2.org
[2026-01-17 18:18:38] apptainer works
[2026-01-17 18:18:38] Set ATHENA_PROC_NUMBER=8
[2026-01-17 18:18:38] Set ATHENA_CORE_NUMBER=8
[2026-01-17 18:18:38] Starting ATLAS job with PandaID=6963167137
[2026-01-17 18:18:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-17 22:05:31]  *** The last 200 lines of the pilot log: ***
[2026-01-17 22:05:31] 2026-01-18 03:04:54,573 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-17 22:05:31] 2026-01-18 03:04:54,968 | INFO     | time since job start (13554s) is within the limit (349056.0s)
[2026-01-17 22:05:31] 2026-01-18 03:04:56,974 | INFO     | time since job start (13556s) is within the limit (349056.0s)
[2026-01-17 22:05:31] 2026-01-18 03:04:57,076 | INFO     | monitor loop #887: job 0:6963167137 is in state 'finished'
[2026-01-17 22:05:31] 2026-01-18 03:04:57,076 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-17 22:05:31] 2026-01-18 03:04:57,517 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-17 22:05:31] 2026-01-18 03:04:57,521 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2854.5296964285712
[2026-01-17 22:05:31] 2026-01-18 03:04:57,530 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963167137/memory_monitor_summary.json (trf name=prmon)
[2026-01-17 22:05:31] 2026-01-18 03:04:57,531 | INFO     | extracted standard info from prmon json
[2026-01-17 22:05:31] 2026-01-18 03:04:57,531 | INFO     | extracted standard memory fields from prmon json
[2026-01-17 22:05:31] 2026-01-18 03:04:57,531 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-17 22:05:31] 2026-01-18 03:04:57,532 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-17 22:05:31] 2026-01-18 03:04:57,532 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-17 22:05:31] 2026-01-18 03:04:57,535 | INFO     | fitting pss+swap vs Time
[2026-01-17 22:05:31] 2026-01-18 03:04:57,536 | INFO     | sum of square deviations: 3392744985.878376
[2026-01-17 22:05:31] 2026-01-18 03:04:57,537 | INFO     | sum of deviations: -69254046984.70271
[2026-01-17 22:05:31] 2026-01-18 03:04:57,537 | INFO     | mean x: 1768698718.7972972
[2026-01-17 22:05:31] 2026-01-18 03:04:57,537 | INFO     | mean y: 2236153.4954954954
[2026-01-17 22:05:31] 2026-01-18 03:04:57,538 | INFO     | intersect: 36105611055.88569
[2026-01-17 22:05:31] 2026-01-18 03:04:57,538 | INFO     | chi2: 2.8295465970140765
[2026-01-17 22:05:31] 2026-01-18 03:04:57,538 | INFO     | sum of square deviations: 3168658587.926264
[2026-01-17 22:05:31] 2026-01-18 03:04:57,539 | INFO     | sum of deviations: -53335554976.548416
[2026-01-17 22:05:31] 2026-01-18 03:04:57,540 | INFO     | mean x: 1768698566.3041475
[2026-01-17 22:05:31] 2026-01-18 03:04:57,540 | INFO     | mean y: 2246837.3870967743
[2026-01-17 22:05:31] 2026-01-18 03:04:57,540 | INFO     | intersect: 29773368276.442062
[2026-01-17 22:05:31] 2026-01-18 03:04:57,540 | INFO     | chi2: 2.1870309430734265
[2026-01-17 22:05:31] 2026-01-18 03:04:57,540 | INFO     | current chi2=2.1870309430734265 (change=22.707371372455036 %)
[2026-01-17 22:05:31] 2026-01-18 03:04:57,540 | INFO     | right removable region: 216
[2026-01-17 22:05:31] 2026-01-18 03:04:57,541 | INFO     | sum of square deviations: 3168618327.926264
[2026-01-17 22:05:31] 2026-01-18 03:04:57,542 | INFO     | sum of deviations: -101302423661.52078
[2026-01-17 22:05:31] 2026-01-18 03:04:57,542 | INFO     | mean x: 1768698871.3041475
[2026-01-17 22:05:31] 2026-01-18 03:04:57,542 | INFO     | mean y: 2257768.0230414746
[2026-01-17 22:05:31] 2026-01-18 03:04:57,542 | INFO     | intersect: 56548507220.46763
[2026-01-17 22:05:31] 2026-01-18 03:04:57,542 | INFO     | chi2: 1.2639052156019508
[2026-01-17 22:05:31] 2026-01-18 03:04:57,543 | INFO     | current chi2=1.2639052156019508 (change=55.33188190165497 %)
[2026-01-17 22:05:31] 2026-01-18 03:04:57,543 | INFO     | sum of square deviations: 2954584882.4528413
[2026-01-17 22:05:31] 2026-01-18 03:04:57,544 | INFO     | sum of deviations: -97342312990.26407
[2026-01-17 22:05:31] 2026-01-18 03:04:57,544 | INFO     | mean x: 1768699023.8113208
[2026-01-17 22:05:31] 2026-01-18 03:04:57,544 | INFO     | mean y: 2254904.1933962265
[2026-01-17 22:05:31] 2026-01-18 03:04:57,544 | INFO     | intersect: 58274147847.2333
[2026-01-17 22:05:31] 2026-01-18 03:04:57,545 | INFO     | chi2: 1.2385648652287955
[2026-01-17 22:05:31] 2026-01-18 03:04:57,545 | INFO     | current chi2=1.2385648652287955 (change=2.004924899458274 %)
[2026-01-17 22:05:31] 2026-01-18 03:04:57,545 | INFO     | left removable region: 20
[2026-01-17 22:05:31] 2026-01-18 03:04:57,545 | INFO     | sum of square deviations: 2334831651.4438667
[2026-01-17 22:05:31] 2026-01-18 03:04:57,546 | INFO     | sum of deviations: -66037614970.648026
[2026-01-17 22:05:31] 2026-01-18 03:04:57,546 | INFO     | mean x: 1768699145.8316326
[2026-01-17 22:05:31] 2026-01-18 03:04:57,546 | INFO     | mean y: 2254743.5561224488
[2026-01-17 22:05:31] 2026-01-18 03:04:57,546 | INFO     | intersect: 50027563043.24168
[2026-01-17 22:05:31] 2026-01-18 03:04:57,547 | INFO     | chi2: 0.5615785608516435
[2026-01-17 22:05:31] 2026-01-18 03:04:57,547 | INFO     | current memory leak: -28.28 B/s (using 196 data points, chi2=0.56)
[2026-01-17 22:05:31] 2026-01-18 03:04:57,547 | INFO     | could have reported an average CPU frequency of 2875 MHz (11 samples)
[2026-01-17 22:05:31] 2026-01-18 03:04:57,548 | INFO     | ..............................
[2026-01-17 22:05:31] 2026-01-18 03:04:57,548 | INFO     | . Timing measurements:
[2026-01-17 22:05:31] 2026-01-18 03:04:57,548 | INFO     | . get job = 0 s
[2026-01-17 22:05:31] 2026-01-18 03:04:57,548 | INFO     | . initial setup = 3 s
[2026-01-17 22:05:31] 2026-01-18 03:04:57,548 | INFO     | . payload setup = 12 s
[2026-01-17 22:05:31] 2026-01-18 03:04:57,548 | INFO     | . stage-in = 0 s
[2026-01-17 22:05:31] 2026-01-18 03:04:57,548 | INFO     | . payload execution = 13507 s
[2026-01-17 22:05:31] 2026-01-18 03:04:57,548 | INFO     | . stage-out = 2 s
[2026-01-17 22:05:31] 2026-01-18 03:04:57,548 | INFO     | . log creation = 0 s
[2026-01-17 22:05:31] 2026-01-18 03:04:57,548 | INFO     | ..............................
[2026-01-17 22:05:31] 2026-01-18 03:04:57,630 | INFO     | 
[2026-01-17 22:05:31] 2026-01-18 03:04:57,630 | INFO     | job summary report
[2026-01-17 22:05:31] 2026-01-18 03:04:57,630 | INFO     | --------------------------------------------------
[2026-01-17 22:05:31] 2026-01-18 03:04:57,630 | INFO     | PanDA job id: 6963167137
[2026-01-17 22:05:31] 2026-01-18 03:04:57,631 | INFO     | task id: 47898826
[2026-01-17 22:05:31] 2026-01-18 03:04:57,631 | INFO     | errors: (none)
[2026-01-17 22:05:31] 2026-01-18 03:04:57,631 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-17 22:05:31] 2026-01-18 03:04:57,631 | INFO     | pilot state: finished 
[2026-01-17 22:05:31] 2026-01-18 03:04:57,631 | INFO     | transexitcode: 0
[2026-01-17 22:05:31] 2026-01-18 03:04:57,631 | INFO     | exeerrorcode: 0
[2026-01-17 22:05:31] 2026-01-18 03:04:57,631 | INFO     | exeerrordiag: 
[2026-01-17 22:05:31] 2026-01-18 03:04:57,631 | INFO     | exitcode: 0
[2026-01-17 22:05:31] 2026-01-18 03:04:57,631 | INFO     | exitmsg: OK
[2026-01-17 22:05:31] 2026-01-18 03:04:57,631 | INFO     | cpuconsumptiontime: 54310 s
[2026-01-17 22:05:31] 2026-01-18 03:04:57,631 | INFO     | nevents: 400
[2026-01-17 22:05:31] 2026-01-18 03:04:57,631 | INFO     | neventsw: 0
[2026-01-17 22:05:31] 2026-01-18 03:04:57,631 | INFO     | pid: 2076604
[2026-01-17 22:05:31] 2026-01-18 03:04:57,631 | INFO     | pgrp: 2076604
[2026-01-17 22:05:31] 2026-01-18 03:04:57,632 | INFO     | corecount: 8
[2026-01-17 22:05:31] 2026-01-18 03:04:57,632 | INFO     | event service: False
[2026-01-17 22:05:31] 2026-01-18 03:04:57,632 | INFO     | sizes: {0: 2283971, 1: 2283971, 10: 2284261, 11: 2284289, 13524: 2314987, 13527: 2323985, 13530: 2324169, 13538: 2324363}
[2026-01-17 22:05:31] 2026-01-18 03:04:57,632 | INFO     | --------------------------------------------------
[2026-01-17 22:05:31] 2026-01-18 03:04:57,632 | INFO     | 
[2026-01-17 22:05:31] 2026-01-18 03:04:57,632 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-17 22:05:31] 2026-01-18 03:04:57,653 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-17 22:05:31] 2026-01-18 03:04:57,653 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-17 22:05:31] 2026-01-18 03:04:57,653 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-17 22:05:31] 2026-01-18 03:04:57,653 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-17 22:05:31] 2026-01-18 03:04:57,654 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-17 22:05:31] 2026-01-18 03:04:57,654 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-17 22:05:31] 2026-01-18 03:04:57,654 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-17 22:05:31] 2026-01-18 03:04:57,654 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-17 22:05:31] 2026-01-18 03:04:57,654 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-17 22:05:31] 2026-01-18 03:04:57,654 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-17 22:05:31] 2026-01-18 03:04:57,654 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-17 22:05:31] 2026-01-18 03:04:57,654 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-17 22:05:31] 2026-01-18 03:04:57,654 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-17 22:05:31] 2026-01-18 03:04:57,654 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-17 22:05:31] 2026-01-18 03:04:57,654 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-17 22:05:31] 2026-01-18 03:04:57,654 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-17 22:05:31] 2026-01-18 03:04:57,654 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-17 22:05:31] 2026-01-18 03:04:57,655 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-17 22:05:31] 2026-01-18 03:04:57,655 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-17 22:05:31] 2026-01-18 03:04:57,655 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-17 22:05:31] 2026-01-18 03:04:57,655 | INFO     | job 6963167137 has completed (purged errors)
[2026-01-17 22:05:31] 2026-01-18 03:04:57,655 | INFO     | overall cleanup function is called
[2026-01-17 22:05:31] 2026-01-18 03:04:58,439 | INFO     | PID=2069244 has CPU usage=10.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-17 22:05:31] 2026-01-18 03:04:58,439 | INFO     | .. there are 13 such processes running
[2026-01-17 22:05:31] 2026-01-18 03:04:58,663 | INFO     | --- collectZombieJob: --- 10, [2076604]
[2026-01-17 22:05:31] 2026-01-18 03:04:58,664 | INFO     | zombie collector waiting for pid 2076604
[2026-01-17 22:05:31] 2026-01-18 03:04:58,664 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-17 22:05:31] 2026-01-18 03:04:58,664 | INFO     | collected zombie processes
[2026-01-17 22:05:31] 2026-01-18 03:04:58,664 | INFO     | will attempt to kill all subprocesses of pid=2076604
[2026-01-17 22:05:31] 2026-01-18 03:04:58,941 | INFO     | process IDs to be killed: [2076604] (in reverse order)
[2026-01-17 22:05:31] 2026-01-18 03:04:59,038 | WARNING  | found no corresponding commands to process id(s)
[2026-01-17 22:05:31] 2026-01-18 03:04:59,038 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-17 22:05:31] 2026-01-18 03:04:59,050 | INFO     | did not find any defunct processes belonging to 2076604
[2026-01-17 22:05:31] 2026-01-18 03:04:59,061 | INFO     | did not find any defunct processes belonging to 2076604
[2026-01-17 22:05:31] 2026-01-18 03:04:59,061 | INFO     | ready for new job
[2026-01-17 22:05:31] 2026-01-18 03:04:59,062 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-17 22:05:31] 2026-01-18 03:04:59,064 | INFO     | ***************************************
[2026-01-17 22:05:31] 2026-01-18 03:04:59,064 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-17 22:05:31] 2026-01-18 03:04:59,064 | INFO     | ***************************************
[2026-01-17 22:05:31] 2026-01-18 03:04:59,064 | INFO     | 
[2026-01-17 22:05:31] 2026-01-18 03:04:59,081 | INFO     | architecture information:
[2026-01-17 22:05:31] 2026-01-18 03:04:59,081 | INFO     | executing command: cat /etc/os-release
[2026-01-17 22:05:31] 2026-01-18 03:04:59,114 | INFO     | cat /etc/os-release:
[2026-01-17 22:05:31] NAME="CentOS Linux"
[2026-01-17 22:05:31] VERSION="7 (Core)"
[2026-01-17 22:05:31] ID="centos"
[2026-01-17 22:05:31] ID_LIKE="rhel fedora"
[2026-01-17 22:05:31] VERSION_ID="7"
[2026-01-17 22:05:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-17 22:05:31] ANSI_COLOR="0;31"
[2026-01-17 22:05:31] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-17 22:05:31] HOME_URL="https://www.centos.org/"
[2026-01-17 22:05:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-17 22:05:31] 
[2026-01-17 22:05:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-17 22:05:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-17 22:05:31] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-17 22:05:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-17 22:05:31] 
[2026-01-17 22:05:31] 2026-01-18 03:04:59,115 | INFO     | ***************************************
[2026-01-17 22:05:31] 2026-01-18 03:04:59,618 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-17 22:05:31] 2026-01-18 03:04:59,636 | INFO     | sufficient remaining disk space (76474744832 B)
[2026-01-17 22:05:31] 2026-01-18 03:04:59,636 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-17 22:05:31] 2026-01-18 03:04:59,637 | INFO     | current server update state: UPDATING_FINAL
[2026-01-17 22:05:31] 2026-01-18 03:04:59,637 | INFO     | update_server=False
[2026-01-17 22:05:31] 2026-01-18 03:04:59,637 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-17 22:05:31] 2026-01-18 03:04:59,637 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-17 22:05:31] 2026-01-18 03:04:59,878 | INFO     | all data control threads have been joined
[2026-01-17 22:05:31] 2026-01-18 03:04:59,932 | INFO     | all job control threads have been joined
[2026-01-17 22:05:31] 2026-01-18 03:05:00,496 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-17 22:05:31] 2026-01-18 03:05:00,599 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-17 22:05:31] 2026-01-18 03:05:00,600 | INFO     | aborting loop
[2026-01-17 22:05:31] 2026-01-18 03:05:00,645 | INFO     | [job] retrieve thread has finished
[2026-01-17 22:05:31] 2026-01-18 03:05:00,653 | INFO     | all payload control threads have been joined
[2026-01-17 22:05:31] 2026-01-18 03:05:00,838 | INFO     | [job] create_data_payload thread has finished
[2026-01-17 22:05:31] 2026-01-18 03:05:00,884 | INFO     | [data] control thread has finished
[2026-01-17 22:05:31] 2026-01-18 03:05:00,938 | INFO     | [job] control thread has finished
[2026-01-17 22:05:31] 2026-01-18 03:05:01,006 | INFO     | [data] copytool_in thread has finished
[2026-01-17 22:05:31] 2026-01-18 03:05:01,137 | INFO     | [payload] validate_pre thread has finished
[2026-01-17 22:05:31] 2026-01-18 03:05:01,218 | INFO     | [payload] execute_payloads thread has finished
[2026-01-17 22:05:31] 2026-01-18 03:05:01,232 | INFO     | [payload] validate_post thread has finished
[2026-01-17 22:05:31] 2026-01-18 03:05:01,606 | INFO     | [job] job monitor thread has finished
[2026-01-17 22:05:31] 2026-01-18 03:05:01,647 | INFO     | [data] copytool_out thread has finished
[2026-01-17 22:05:31] 2026-01-18 03:05:01,660 | INFO     | [payload] control thread has finished
[2026-01-17 22:05:31] 2026-01-18 03:05:01,844 | INFO     | [payload] failed_post thread has finished
[2026-01-17 22:05:31] 2026-01-18 03:05:01,982 | INFO     | [job] validate thread has finished
[2026-01-17 22:05:31] 2026-01-18 03:05:02,643 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-17 22:05:31] 2026-01-18 03:05:03,651 | INFO     | [job] queue monitor thread has finished
[2026-01-17 22:05:31] 2026-01-18 03:05:04,505 | INFO     | [data] queue_monitor thread has finished
[2026-01-17 22:05:31] 2026-01-18 03:05:10,356 | INFO     | job.realtimelogging is not enabled
[2026-01-17 22:05:31] 2026-01-18 03:05:11,362 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-17 22:05:31] 2026-01-18 03:05:24,097 | INFO     | [monitor] cgroup control has ended
[2026-01-17 22:05:31] 2026-01-18 03:05:25,227 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139886918637376)>', '<ExcThread(monitor, started 139886212413184)>']
[2026-01-17 22:05:31] 2026-01-18 03:05:30,252 | INFO     | all workflow threads have been joined
[2026-01-17 22:05:31] 2026-01-18 03:05:30,252 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-17 22:05:31] 2026-01-18 03:05:30,253 | INFO     | traces error code: 0
[2026-01-17 22:05:31] 2026-01-18 03:05:30,253 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-17 22:05:31] 2026-01-18 03:05:30,825 | INFO     | PID=2069244 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-17 22:05:31] 2026-01-18 03:05:30,825 | INFO     | .. there are 13 such processes running
[2026-01-17 22:05:31] 2026-01-18 03:05:30,826 | INFO     | found 0 job(s) in 20 queues
[2026-01-17 22:05:31] 2026-01-18 03:05:30,826 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-17 22:05:31] 2026-01-18 03:05:30,826 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-17 22:05:31] 2026-01-18 03:05:30,826 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-17 22:05:31] 2026-01-18 03:05:30,826 | CRITICAL | thread 'MainThread' is not alive
[2026-01-17 22:05:31] 2026-01-18 03:05:30,826 | INFO     | [monitor] control thread has ended
[2026-01-17 22:05:31] 2026-01-18 03:05:30,988 [wrapper] ==== pilot stdout END ====
[2026-01-17 22:05:31] 2026-01-18 03:05:30,990 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-17 22:05:31] 2026-01-18 03:05:30,993 [wrapper] pilotpid: 2069244
[2026-01-17 22:05:31] 2026-01-18 03:05:30,995 [wrapper] Pilot exit status: 0
[2026-01-17 22:05:31] 2026-01-18 03:05:31,017 [wrapper] pandaids: 6963167137
[2026-01-17 22:05:31] 2026-01-18 03:05:31,089 [wrapper] cleanup supervisor_pilot 2579184 2069245
[2026-01-17 22:05:31] 2026-01-18 03:05:31,093 [wrapper] Test setup, not cleaning
[2026-01-17 22:05:31] 2026-01-18 03:05:31,096 [wrapper] apfmon messages muted
[2026-01-17 22:05:31] 2026-01-18 03:05:31,098 [wrapper] ==== wrapper stdout END ====
[2026-01-17 22:05:31] 2026-01-18 03:05:31,101 [wrapper] ==== wrapper stderr END ====
[2026-01-17 22:05:31]  *** Error codes and diagnostics ***
[2026-01-17 22:05:31]     "exeErrorCode": 0,
[2026-01-17 22:05:31]     "exeErrorDiag": "",
[2026-01-17 22:05:31]     "pilotErrorCode": 0,
[2026-01-17 22:05:31]     "pilotErrorDiag": "",
[2026-01-17 22:05:31]  *** Listing of results directory ***
[2026-01-17 22:05:31] total 444484
[2026-01-17 22:05:31] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 19:57 pilot3.tar.gz
[2026-01-17 22:05:31] -rwx------. 1 boincer umatlas     36322 Jan  8 19:59 runpilot2-wrapper.sh
[2026-01-17 22:05:31] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 20:02 queuedata.json
[2026-01-17 22:05:31] -rw-r--r--. 1 boincer umatlas       100 Jan 17 18:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-17 22:05:31] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 17 18:18 run_atlas
[2026-01-17 22:05:31] -rw-r--r--. 1 boincer umatlas       105 Jan 17 18:18 job.xml
[2026-01-17 22:05:31] -rw-r--r--. 2 boincer umatlas 222828774 Jan 17 18:18 EVNT.47898824._001376.pool.root.1
[2026-01-17 22:05:31] -rw-r--r--. 2 boincer umatlas    592403 Jan 17 18:18 input.tar.gz
[2026-01-17 22:05:31] -rw-r--r--. 2 boincer umatlas     15847 Jan 17 18:18 start_atlas.sh
[2026-01-17 22:05:31] drwxrwx--x. 2 boincer umatlas      4096 Jan 17 18:18 shared
[2026-01-17 22:05:31] -rw-r--r--. 1 boincer umatlas         0 Jan 17 18:18 boinc_lockfile
[2026-01-17 22:05:31] -rw-r--r--. 1 boincer umatlas      2520 Jan 17 18:18 pandaJob.out
[2026-01-17 22:05:31] -rw-------. 1 boincer umatlas        57 Jan 17 18:18 setup.sh.local
[2026-01-17 22:05:31] -rw-------. 1 boincer umatlas   1004149 Jan 17 18:18 agis_schedconf.cvmfs.json
[2026-01-17 22:05:31] drwx------. 5 boincer umatlas      4096 Jan 17 18:19 pilot3
[2026-01-17 22:05:31] -rw-r--r--. 1 boincer umatlas      6843 Jan 17 22:01 init_data.xml
[2026-01-17 22:05:31] -rw-------. 1 boincer umatlas 223854987 Jan 17 22:04 HITS.47898826._035512.pool.root.1
[2026-01-17 22:05:31] -rw-r--r--. 1 boincer umatlas       531 Jan 17 22:04 boinc_task_state.xml
[2026-01-17 22:05:31] -rw-------. 1 boincer umatlas      1037 Jan 17 22:04 memory_monitor_summary.json
[2026-01-17 22:05:31] -rw-------. 1 boincer umatlas   1516246 Jan 17 22:04 agis_ddmendpoints.agis.ALL.json
[2026-01-17 22:05:31] -rw-------. 1 boincer umatlas    454185 Jan 17 22:04 log.47898826._035512.job.log.tgz.1
[2026-01-17 22:05:31] -rw-------. 1 boincer umatlas      7824 Jan 17 22:04 heartbeat.json
[2026-01-17 22:05:31] -rw-r--r--. 1 boincer umatlas        28 Jan 17 22:05 wrapper_checkpoint.txt
[2026-01-17 22:05:31] -rw-r--r--. 1 boincer umatlas      8192 Jan 17 22:05 boinc_mmap_file
[2026-01-17 22:05:31] -rw-------. 1 boincer umatlas        95 Jan 17 22:05 pilot_heartbeat.json
[2026-01-17 22:05:31] -rw-------. 1 boincer umatlas       893 Jan 17 22:05 pilotlog.txt
[2026-01-17 22:05:31] -rw-------. 1 boincer umatlas   1815031 Jan 17 22:05 log.47898826._035512.job.log.1
[2026-01-17 22:05:31] -rw-------. 1 boincer umatlas       357 Jan 17 22:05 output.list
[2026-01-17 22:05:31] -rw-r--r--. 1 boincer umatlas       620 Jan 17 22:05 runtime_log
[2026-01-17 22:05:31] -rw-------. 1 boincer umatlas   2283520 Jan 17 22:05 result.tar.gz
[2026-01-17 22:05:31] -rw-r--r--. 1 boincer umatlas      9348 Jan 17 22:05 runtime_log.err
[2026-01-17 22:05:31] -rw-------. 1 boincer umatlas       657 Jan 17 22:05 fCKNDmM1Fy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmClgKDmBjDwSn.diag
[2026-01-17 22:05:31] -rw-r--r--. 1 boincer umatlas     21431 Jan 17 22:05 stderr.txt
[2026-01-17 22:05:31] HITS file was successfully produced:
[2026-01-17 22:05:31] -rw-------. 1 boincer umatlas 223854987 Jan 17 22:04 shared/HITS.pool.root.1
[2026-01-17 22:05:31]  *** Contents of shared directory: ***
[2026-01-17 22:05:31] total 439056
[2026-01-17 22:05:31] -rw-r--r--. 2 boincer umatlas 222828774 Jan 17 18:18 ATLAS.root_0
[2026-01-17 22:05:31] -rw-r--r--. 2 boincer umatlas    592403 Jan 17 18:18 input.tar.gz
[2026-01-17 22:05:31] -rw-r--r--. 2 boincer umatlas     15847 Jan 17 18:18 start_atlas.sh
[2026-01-17 22:05:31] -rw-------. 1 boincer umatlas 223854987 Jan 17 22:04 HITS.pool.root.1
[2026-01-17 22:05:31] -rw-------. 1 boincer umatlas   2283520 Jan 17 22:05 result.tar.gz
22:05:53 (2065479): run_atlas exited; CPU time 54625.073730
22:05:53 (2065479): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN