Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:41:13 (605177): wrapper (7.7.26015): starting
19:41:13 (605177): wrapper: running run_atlas (--nthreads 3)
[2026-01-16 19:41:13] Arguments: --nthreads 3
[2026-01-16 19:41:13] Threads: 3
[2026-01-16 19:41:13] Checking for CVMFS
[2026-01-16 19:41:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-16 19:41:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-16 19:41:13] Running cvmfs_config stat atlas.cern.ch
[2026-01-16 19:41:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-16 19:41:13] 2.9.2.0 582707 57 50244 155216 2 57 23738822 36864001 0 130560 0 60257 99.972 4218 2524 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-16 19:41:13] CVMFS is ok
[2026-01-16 19:41:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-16 19:41:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-16 19:41:13] Further information can be found at the LHC@home message board.
[2026-01-16 19:41:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-16 19:41:13] Checking for apptainer binary...
[2026-01-16 19:41:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-16 19:41:13] Running /usr/bin/apptainer --version
[2026-01-16 19:41:13] apptainer version 1.4.1-1.1
[2026-01-16 19:41:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-16 19:41:13] thA349
[2026-01-16 19:41:13] apptainer works
[2026-01-16 19:41:13] Set ATHENA_PROC_NUMBER=3
[2026-01-16 19:41:13] Set ATHENA_CORE_NUMBER=3
[2026-01-16 19:41:13] Starting ATLAS job with PandaID=6969345224
[2026-01-16 19:41:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-16 20:36:30]  *** The last 200 lines of the pilot log: ***
[2026-01-16 20:36:30] 2026-01-16 19:35:40,822 | INFO     | [payload] control thread has finished
[2026-01-16 20:36:30] 2026-01-16 19:35:40,831 | INFO     | [data] control thread has finished
[2026-01-16 20:36:30] 2026-01-16 19:35:40,907 | INFO     | [payload] validate_post thread has finished
[2026-01-16 20:36:30] 2026-01-16 19:35:41,235 | INFO     | [job] job monitor thread has finished
[2026-01-16 20:36:30] 2026-01-16 19:35:41,250 | INFO     | [job] control thread has finished
[2026-01-16 20:36:30] 2026-01-16 19:35:41,647 | INFO     | [data] copytool_in thread has finished
[2026-01-16 20:36:30] 2026-01-16 19:35:41,793 | INFO     | [payload] failed_post thread has finished
[2026-01-16 20:36:30] 2026-01-16 19:35:41,879 | INFO     | [payload] execute_payloads thread has finished
[2026-01-16 20:36:30] 2026-01-16 19:35:42,019 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-16 20:36:30] 2026-01-16 19:35:42,180 | INFO     | [data] copytool_out thread has finished
[2026-01-16 20:36:30] 2026-01-16 19:35:42,212 | INFO     | [job] validate thread has finished
[2026-01-16 20:36:30] 2026-01-16 19:35:42,247 | INFO     | [job] create_data_payload thread has finished
[2026-01-16 20:36:30] 2026-01-16 19:35:42,701 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-16 20:36:30] 2026-01-16 19:35:46,708 | INFO     | [data] queue_monitor thread has finished
[2026-01-16 20:36:30] 2026-01-16 19:36:10,473 | INFO     | PID=608899 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-16 20:36:30] 2026-01-16 19:36:10,473 | INFO     | found 0 job(s) in 20 queues
[2026-01-16 20:36:30] 2026-01-16 19:36:10,473 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-16 20:36:30] 2026-01-16 19:36:10,473 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-16 20:36:30] 2026-01-16 19:36:23,259 | INFO     | [monitor] cgroup control has ended
[2026-01-16 20:36:30] 2026-01-16 19:36:24,966 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139802096301888)>', '<ExcThread(monitor, started 139801378416384)>']
[2026-01-16 20:36:30] 2026-01-16 19:36:25,553 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-16 20:36:30] 2026-01-16 19:36:25,553 | INFO     | [monitor] control thread has ended
[2026-01-16 20:36:30] 2026-01-16 19:36:29,991 | INFO     | all workflow threads have been joined
[2026-01-16 20:36:30] 2026-01-16 19:36:29,992 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-16 20:36:30] 2026-01-16 19:36:29,992 | INFO     | traces error code: 0
[2026-01-16 20:36:30] 2026-01-16 19:36:29,992 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-16 20:36:30] 2026-01-16 19:36:30,042 [wrapper] ==== pilot stdout END ====
[2026-01-16 20:36:30] 2026-01-16 19:36:30,045 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-16 20:36:30] 2026-01-16 19:36:30,047 [wrapper] pilotpid: 608899
[2026-01-16 20:36:30] 2026-01-16 19:36:30,049 [wrapper] Pilot exit status: 0
[2026-01-16 20:36:30] 2026-01-16 19:36:30,056 [wrapper] pandaids: 6969345224
[2026-01-16 20:36:30] 2026-01-16 19:36:30,072 [wrapper] cleanup supervisor_pilot  624511 608900
[2026-01-16 20:36:30] 2026-01-16 19:36:30,074 [wrapper] Test setup, not cleaning
[2026-01-16 20:36:30] 2026-01-16 19:36:30,077 [wrapper] apfmon messages muted
[2026-01-16 20:36:30] 2026-01-16 19:36:30,079 [wrapper] ==== wrapper stdout END ====
[2026-01-16 20:36:30] 2026-01-16 19:36:30,081 [wrapper] ==== wrapper stderr END ====
[2026-01-16 20:36:30]  *** Error codes and diagnostics ***
[2026-01-16 20:36:30]     "exeErrorCode": 0,
[2026-01-16 20:36:30]     "exeErrorDiag": "",
[2026-01-16 20:36:30]     "pilotErrorCode": 0,
[2026-01-16 20:36:30]     "pilotErrorDiag": "",
[2026-01-16 20:36:30]  *** Listing of results directory ***
[2026-01-16 20:36:30] total 737660
[2026-01-16 20:36:30] -rw-r--r-- 1 boinc boinc    579449 Jan 14 06:14 pilot3.tar.gz
[2026-01-16 20:36:30] -rwx------ 1 boinc boinc     36322 Jan 14 06:14 runpilot2-wrapper.sh
[2026-01-16 20:36:30] -rw-r--r-- 1 boinc boinc      5112 Jan 14 06:17 queuedata.json
[2026-01-16 20:36:30] -rw-r--r-- 1 boinc boinc       100 Jan 16 19:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-16 20:36:30] -rwxr-xr-x 1 boinc boinc      7986 Jan 16 19:41 run_atlas
[2026-01-16 20:36:30] -rw-r--r-- 1 boinc boinc       105 Jan 16 19:41 job.xml
[2026-01-16 20:36:30] -rw-r--r-- 2 boinc boinc 597373579 Jan 16 19:41 EVNT.32794306._000594.pool.root.1
[2026-01-16 20:36:30] -rw-r--r-- 2 boinc boinc    592398 Jan 16 19:41 input.tar.gz
[2026-01-16 20:36:30] -rw-r--r-- 2 boinc boinc     15847 Jan 16 19:41 start_atlas.sh
[2026-01-16 20:36:30] drwxrwx--x 2 boinc boinc      4096 Jan 16 19:41 shared
[2026-01-16 20:36:30] -rw-r--r-- 1 boinc boinc         0 Jan 16 19:41 boinc_setup_complete
[2026-01-16 20:36:30] -rw-r--r-- 1 boinc boinc      6445 Jan 16 19:41 init_data.xml
[2026-01-16 20:36:30] -rw-r--r-- 1 boinc boinc         0 Jan 16 19:41 boinc_lockfile
[2026-01-16 20:36:30] -rw-r--r-- 1 boinc boinc      2507 Jan 16 19:41 pandaJob.out
[2026-01-16 20:36:30] -rw------- 1 boinc boinc   1004091 Jan 16 19:41 agis_schedconf.cvmfs.json
[2026-01-16 20:36:30] -rw------- 1 boinc boinc   1516246 Jan 16 19:41 agis_ddmendpoints.agis.ALL.json
[2026-01-16 20:36:30] drwx------ 5 boinc boinc      4096 Jan 16 19:41 pilot3
[2026-01-16 20:36:30] -rw------- 1 boinc boinc 152616518 Jan 16 20:35 HITS.48215263._014840.pool.root.1
[2026-01-16 20:36:30] -rw-r--r-- 1 boinc boinc       529 Jan 16 20:35 boinc_task_state.xml
[2026-01-16 20:36:30] -rw------- 1 boinc boinc      1007 Jan 16 20:35 memory_monitor_summary.json
[2026-01-16 20:36:30] -rw------- 1 boinc boinc    231048 Jan 16 20:35 log.48215263._014840.job.log.tgz.1
[2026-01-16 20:36:30] -rw------- 1 boinc boinc        95 Jan 16 20:35 pilot_heartbeat.json
[2026-01-16 20:36:30] -rw------- 1 boinc boinc      7737 Jan 16 20:35 heartbeat.json
[2026-01-16 20:36:30] -rw-r--r-- 1 boinc boinc      8192 Jan 16 20:36 boinc_mmap_file
[2026-01-16 20:36:30] -rw-r--r-- 1 boinc boinc        26 Jan 16 20:36 wrapper_checkpoint.txt
[2026-01-16 20:36:30] -rw------- 1 boinc boinc      4937 Jan 16 20:36 pilotlog.txt
[2026-01-16 20:36:30] -rw------- 1 boinc boinc    495954 Jan 16 20:36 log.48215263._014840.job.log.1
[2026-01-16 20:36:30] -rw------- 1 boinc boinc       357 Jan 16 20:36 output.list
[2026-01-16 20:36:30] -rw-r--r-- 1 boinc boinc       620 Jan 16 20:36 runtime_log
[2026-01-16 20:36:30] -rw------- 1 boinc boinc    747520 Jan 16 20:36 result.tar.gz
[2026-01-16 20:36:30] -rw-r--r-- 1 boinc boinc      8897 Jan 16 20:36 runtime_log.err
[2026-01-16 20:36:30] -rw------- 1 boinc boinc       656 Jan 16 20:36 orkKDmPO8z8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmAGqKDmhwNjnn.diag
[2026-01-16 20:36:30] -rw-r--r-- 1 boinc boinc      6126 Jan 16 20:36 stderr.txt
[2026-01-16 20:36:30] HITS file was successfully produced:
[2026-01-16 20:36:30] -rw------- 1 boinc boinc 152616518 Jan 16 20:35 shared/HITS.pool.root.1
[2026-01-16 20:36:30]  *** Contents of shared directory: ***
[2026-01-16 20:36:30] total 733752
[2026-01-16 20:36:30] -rw-r--r-- 2 boinc boinc 597373579 Jan 16 19:41 ATLAS.root_0
[2026-01-16 20:36:30] -rw-r--r-- 2 boinc boinc    592398 Jan 16 19:41 input.tar.gz
[2026-01-16 20:36:30] -rw-r--r-- 2 boinc boinc     15847 Jan 16 19:41 start_atlas.sh
[2026-01-16 20:36:30] -rw------- 1 boinc boinc 152616518 Jan 16 20:35 HITS.pool.root.1
[2026-01-16 20:36:30] -rw------- 1 boinc boinc    747520 Jan 16 20:36 result.tar.gz
20:36:31 (605177): run_atlas exited; CPU time 9156.480715
20:36:31 (605177): called boinc_finish(0)

</stderr_txt>
]]>

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