Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:13:23 (5588): wrapper (7.7.26015): starting
21:13:23 (5588): wrapper: running run_atlas (--nthreads 12)
[2026-01-15 21:13:23] Arguments: --nthreads 12
[2026-01-15 21:13:23] Threads: 12
[2026-01-15 21:13:23] Checking for CVMFS
[2026-01-15 21:13:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 21:13:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 21:13:23] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 21:13:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 21:13:23] 2.11.2.0 3009 145773 99252 155191 3 1 19549620 20275200 1 130560 0 54772489 99.886 8647695 39544 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-15 21:13:23] CVMFS is ok
[2026-01-15 21:13:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 21:13:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 21:13:23] Further information can be found at the LHC@home message board.
[2026-01-15 21:13:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 21:13:23] Checking for apptainer binary...
[2026-01-15 21:13:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 21:13:23] Running /usr/bin/apptainer --version
[2026-01-15 21:13:23] apptainer version 1.3.2-1.el7
[2026-01-15 21:13:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 21:13:25] c-115-42.aglt2.org
[2026-01-15 21:13:25] apptainer works
[2026-01-15 21:13:25] Set ATHENA_PROC_NUMBER=12
[2026-01-15 21:13:25] Set ATHENA_CORE_NUMBER=12
[2026-01-15 21:13:25] Starting ATLAS job with PandaID=6962319280
[2026-01-15 21:13:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 22:49:56]  *** The last 200 lines of the pilot log: ***
[2026-01-15 22:49:56]  protocol_id=None
[2026-01-15 22:49:56]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-15 22:49:56]  replicas=None
[2026-01-15 22:49:56]  scope=mc23_13p6TeV
[2026-01-15 22:49:56]  status=None
[2026-01-15 22:49:56]  status_code=0
[2026-01-15 22:49:56]  storage_token=
[2026-01-15 22:49:56]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6962319280/log.47898826._013188.job.log.tgz.1
[2026-01-15 22:49:56]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/80/76/log.47898826._013188.job.log.tgz.1
[2026-01-15 22:49:56]  workdir=None
[2026-01-15 22:49:56] ]
[2026-01-15 22:49:56] 2026-01-16 03:48:56,383 | INFO     | transferring file log.47898826._013188.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6962319280/log.47898826._013188.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-15 22:49:56] 2026-01-16 03:48:56,383 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6962319280/log.47898826._013188.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898826._013188.job
[2026-01-15 22:49:56] 2026-01-16 03:48:56,404 | INFO     | adding to output.list: log.47898826._013188.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/80/76/log.47898826._013188.job.log.tg
[2026-01-15 22:49:56] 2026-01-16 03:48:56,405 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-15 22:49:56] 2026-01-16 03:48:56,405 | INFO     | summary of transferred files:
[2026-01-15 22:49:56] 2026-01-16 03:48:56,405 | INFO     |  -- lfn=log.47898826._013188.job.log.tgz.1, status_code=0, status=transferred
[2026-01-15 22:49:56] 2026-01-16 03:48:56,405 | INFO     | stage-out finished correctly
[2026-01-15 22:49:56] 2026-01-16 03:48:56,671 | INFO     | monitor loop #423: job 0:6962319280 is in state 'finished'
[2026-01-15 22:49:56] 2026-01-16 03:48:56,672 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 22:49:56] 2026-01-16 03:48:57,340 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-15 22:49:56] 2026-01-16 03:48:58,112 | INFO     | time since job start (5717s) is within the limit (174528.0s)
[2026-01-15 22:49:56] 2026-01-16 03:48:58,112 | INFO     | 5719s have passed since pilot start - server update state is 'RUNNING'
[2026-01-15 22:49:56] 2026-01-16 03:48:59,069 | INFO     | job 6962319280 has state=finished
[2026-01-15 22:49:56] 2026-01-16 03:48:59,069 | INFO     | preparing for final server update for job 6962319280 in state='finished'
[2026-01-15 22:49:56] 2026-01-16 03:48:59,069 | INFO     | this job has now completed (state=finished)
[2026-01-15 22:49:56] 2026-01-16 03:48:59,070 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-15 22:49:56] 2026-01-16 03:48:59,070 | INFO     | log transfer has been attempted: DONE
[2026-01-15 22:49:56] 2026-01-16 03:48:59,070 | INFO     | job 6962319280 has finished - writing final server update
[2026-01-15 22:49:56] 2026-01-16 03:48:59,070 | INFO     | total number of processed events: 400 (read)
[2026-01-15 22:49:56] 2026-01-16 03:48:59,071 | INFO     | executing command: lscpu
[2026-01-15 22:49:56] 2026-01-16 03:48:59,105 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-15 22:49:56] 2026-01-16 03:48:59,175 | INFO     | monitor loop #424: job 0:6962319280 is in state 'finished'
[2026-01-15 22:49:56] 2026-01-16 03:48:59,175 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 22:49:56] 2026-01-16 03:49:00,121 | INFO     | time since job start (5719s) is within the limit (174528.0s)
[2026-01-15 22:49:56] 2026-01-16 03:49:01,678 | INFO     | monitor loop #425: job 0:6962319280 is in state 'finished'
[2026-01-15 22:49:56] 2026-01-16 03:49:01,678 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 22:49:56] 2026-01-16 03:49:02,126 | INFO     | time since job start (5721s) is within the limit (174528.0s)
[2026-01-15 22:49:56] 2026-01-16 03:49:03,569 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-15 22:49:56] 2026-01-16 03:49:03,573 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1718.0
[2026-01-15 22:49:56] 2026-01-16 03:49:03,575 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6962319280/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 22:49:56] 2026-01-16 03:49:03,576 | INFO     | extracted standard info from prmon json
[2026-01-15 22:49:56] 2026-01-16 03:49:03,576 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 22:49:56] 2026-01-16 03:49:03,576 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 22:49:56] 2026-01-16 03:49:03,576 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 22:49:56] 2026-01-16 03:49:03,577 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 22:49:56] 2026-01-16 03:49:03,578 | INFO     | fitting pss+swap vs Time
[2026-01-15 22:49:56] 2026-01-16 03:49:03,578 | INFO     | sum of square deviations: 204163828.0
[2026-01-15 22:49:56] 2026-01-16 03:49:03,579 | INFO     | sum of deviations: 2875503339.0
[2026-01-15 22:49:56] 2026-01-16 03:49:03,579 | INFO     | mean x: 1768532577.0
[2026-01-15 22:49:56] 2026-01-16 03:49:03,579 | INFO     | mean y: 2698372.425287356
[2026-01-15 22:49:56] 2026-01-16 03:49:03,579 | INFO     | intersect: -24905834055.23753
[2026-01-15 22:49:56] 2026-01-16 03:49:03,579 | INFO     | chi2: 0.126166194752334
[2026-01-15 22:49:56] 2026-01-16 03:49:03,580 | INFO     | current memory leak: 14.08 B/s (using 87 data points, chi2=0.13)
[2026-01-15 22:49:56] 2026-01-16 03:49:03,580 | INFO     | could have reported an average CPU frequency of 2272 MHz (7 samples)
[2026-01-15 22:49:56] 2026-01-16 03:49:03,580 | INFO     | ..............................
[2026-01-15 22:49:56] 2026-01-16 03:49:03,580 | INFO     | . Timing measurements:
[2026-01-15 22:49:56] 2026-01-16 03:49:03,581 | INFO     | . get job = 0 s
[2026-01-15 22:49:56] 2026-01-16 03:49:03,581 | INFO     | . initial setup = 2 s
[2026-01-15 22:49:56] 2026-01-16 03:49:03,581 | INFO     | . payload setup = 7 s
[2026-01-15 22:49:56] 2026-01-16 03:49:03,581 | INFO     | . stage-in = 0 s
[2026-01-15 22:49:56] 2026-01-16 03:49:03,581 | INFO     | . payload execution = 5688 s
[2026-01-15 22:49:56] 2026-01-16 03:49:03,581 | INFO     | . stage-out = 0 s
[2026-01-15 22:49:56] 2026-01-16 03:49:03,581 | INFO     | . log creation = 0 s
[2026-01-15 22:49:56] 2026-01-16 03:49:03,581 | INFO     | ..............................
[2026-01-15 22:49:56] 2026-01-16 03:49:03,753 | INFO     | 
[2026-01-15 22:49:56] 2026-01-16 03:49:03,753 | INFO     | job summary report
[2026-01-15 22:49:56] 2026-01-16 03:49:03,753 | INFO     | --------------------------------------------------
[2026-01-15 22:49:56] 2026-01-16 03:49:03,753 | INFO     | PanDA job id: 6962319280
[2026-01-15 22:49:56] 2026-01-16 03:49:03,753 | INFO     | task id: 47898826
[2026-01-15 22:49:56] 2026-01-16 03:49:03,753 | INFO     | errors: (none)
[2026-01-15 22:49:56] 2026-01-16 03:49:03,754 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-15 22:49:56] 2026-01-16 03:49:03,754 | INFO     | pilot state: finished 
[2026-01-15 22:49:56] 2026-01-16 03:49:03,754 | INFO     | transexitcode: 0
[2026-01-15 22:49:56] 2026-01-16 03:49:03,754 | INFO     | exeerrorcode: 0
[2026-01-15 22:49:56] 2026-01-16 03:49:03,754 | INFO     | exeerrordiag: 
[2026-01-15 22:49:56] 2026-01-16 03:49:03,754 | INFO     | exitcode: 0
[2026-01-15 22:49:56] 2026-01-16 03:49:03,755 | INFO     | exitmsg: OK
[2026-01-15 22:49:56] 2026-01-16 03:49:03,755 | INFO     | cpuconsumptiontime: 61251 s
[2026-01-15 22:49:56] 2026-01-16 03:49:03,755 | INFO     | nevents: 400
[2026-01-15 22:49:56] 2026-01-16 03:49:03,755 | INFO     | neventsw: 0
[2026-01-15 22:49:56] 2026-01-16 03:49:03,755 | INFO     | pid: 16113
[2026-01-15 22:49:56] 2026-01-16 03:49:03,755 | INFO     | pgrp: 16113
[2026-01-15 22:49:56] 2026-01-16 03:49:03,755 | INFO     | corecount: 12
[2026-01-15 22:49:56] 2026-01-16 03:49:03,756 | INFO     | event service: False
[2026-01-15 22:49:56] 2026-01-16 03:49:03,756 | INFO     | sizes: {0: 2283969, 5: 2284231, 11: 2284287, 5699: 2310926, 5700: 2319924, 5701: 2319980, 5707: 2320302}
[2026-01-15 22:49:56] 2026-01-16 03:49:03,756 | INFO     | --------------------------------------------------
[2026-01-15 22:49:56] 2026-01-16 03:49:03,756 | INFO     | 
[2026-01-15 22:49:56] 2026-01-16 03:49:03,756 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-15 22:49:56] 2026-01-16 03:49:03,778 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 22:49:56] 2026-01-16 03:49:03,779 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 22:49:56] 2026-01-16 03:49:03,779 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 22:49:56] 2026-01-16 03:49:03,779 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 22:49:56] 2026-01-16 03:49:03,779 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 22:49:56] 2026-01-16 03:49:03,779 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 22:49:56] 2026-01-16 03:49:03,779 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 22:49:56] 2026-01-16 03:49:03,780 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 22:49:56] 2026-01-16 03:49:03,780 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 22:49:56] 2026-01-16 03:49:03,780 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 22:49:56] 2026-01-16 03:49:03,780 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 22:49:56] 2026-01-16 03:49:03,780 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 22:49:56] 2026-01-16 03:49:03,780 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 22:49:56] 2026-01-16 03:49:03,781 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 22:49:56] 2026-01-16 03:49:03,781 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 22:49:56] 2026-01-16 03:49:03,781 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 22:49:56] 2026-01-16 03:49:03,781 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 22:49:56] 2026-01-16 03:49:03,781 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 22:49:56] 2026-01-16 03:49:03,782 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 22:49:56] 2026-01-16 03:49:03,782 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 22:49:56] 2026-01-16 03:49:03,782 | INFO     | job 6962319280 has completed (purged errors)
[2026-01-15 22:49:56] 2026-01-16 03:49:03,782 | INFO     | overall cleanup function is called
[2026-01-15 22:49:56] 2026-01-16 03:49:04,790 | INFO     | --- collectZombieJob: --- 10, [16113]
[2026-01-15 22:49:56] 2026-01-16 03:49:04,791 | INFO     | zombie collector waiting for pid 16113
[2026-01-15 22:49:56] 2026-01-16 03:49:04,791 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 22:49:56] 2026-01-16 03:49:04,791 | INFO     | collected zombie processes
[2026-01-15 22:49:56] 2026-01-16 03:49:04,791 | INFO     | will attempt to kill all subprocesses of pid=16113
[2026-01-15 22:49:56] 2026-01-16 03:49:04,876 | INFO     | process IDs to be killed: [16113] (in reverse order)
[2026-01-15 22:49:56] 2026-01-16 03:49:04,927 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 22:49:56] 2026-01-16 03:49:04,927 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 22:49:56] 2026-01-16 03:49:04,931 | INFO     | did not find any defunct processes belonging to 16113
[2026-01-15 22:49:56] 2026-01-16 03:49:04,934 | INFO     | did not find any defunct processes belonging to 16113
[2026-01-15 22:49:56] 2026-01-16 03:49:04,935 | INFO     | ready for new job
[2026-01-15 22:49:56] 2026-01-16 03:49:04,935 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 22:49:56] 2026-01-16 03:49:04,936 | INFO     | ***************************************
[2026-01-15 22:49:56] 2026-01-16 03:49:04,936 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 22:49:56] 2026-01-16 03:49:04,936 | INFO     | ***************************************
[2026-01-15 22:49:56] 2026-01-16 03:49:04,937 | INFO     | 
[2026-01-15 22:49:56] 2026-01-16 03:49:04,937 | INFO     | architecture information:
[2026-01-15 22:49:56] 2026-01-16 03:49:04,938 | INFO     | executing command: cat /etc/os-release
[2026-01-15 22:49:56] 2026-01-16 03:49:04,952 | INFO     | cat /etc/os-release:
[2026-01-15 22:49:56] NAME="CentOS Linux"
[2026-01-15 22:49:56] VERSION="7 (Core)"
[2026-01-15 22:49:56] ID="centos"
[2026-01-15 22:49:56] ID_LIKE="rhel fedora"
[2026-01-15 22:49:56] VERSION_ID="7"
[2026-01-15 22:49:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 22:49:56] ANSI_COLOR="0;31"
[2026-01-15 22:49:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 22:49:56] HOME_URL="https://www.centos.org/"
[2026-01-15 22:49:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 22:49:56] 
[2026-01-15 22:49:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 22:49:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 22:49:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 22:49:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 22:49:56] 
[2026-01-15 22:49:56] 2026-01-16 03:49:04,952 | INFO     | ***************************************
[2026-01-15 22:49:56] 2026-01-16 03:49:05,455 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-15 22:49:56] 2026-01-16 03:49:05,471 | INFO     | sufficient remaining disk space (18534629376 B)
[2026-01-15 22:49:56] 2026-01-16 03:49:05,471 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 22:49:56] 2026-01-16 03:49:05,471 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 22:49:56] 2026-01-16 03:49:05,472 | INFO     | update_server=False
[2026-01-15 22:49:56] 2026-01-16 03:49:05,472 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 22:49:56] 2026-01-16 03:49:05,472 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 22:49:56] 2026-01-16 03:49:05,472 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 22:49:56] 2026-01-16 03:49:05,473 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 22:49:56] 2026-01-16 03:49:05,473 | INFO     | aborting loop
[2026-01-15 22:49:56] 2026-01-16 03:49:05,645 | INFO     | all data control threads have been joined
[2026-01-15 22:49:56] 2026-01-16 03:49:06,191 | INFO     | all payload control threads have been joined
[2026-01-15 22:49:56] 2026-01-16 03:49:06,477 | INFO     | [job] retrieve thread has finished
[2026-01-15 22:49:56] 2026-01-16 03:49:06,478 | INFO     | [job] queue monitor thread has finished
[2026-01-15 22:49:56] 2026-01-16 03:49:06,479 | INFO     | [job] job monitor thread has finished
[2026-01-15 22:49:56] 2026-01-16 03:49:06,508 | INFO     | [payload] failed_post thread has finished
[2026-01-15 22:49:56] 2026-01-16 03:49:06,618 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 22:49:56] 2026-01-16 03:49:06,647 | INFO     | [data] control thread has finished
[2026-01-15 22:49:56] 2026-01-16 03:49:06,674 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 22:49:56] 2026-01-16 03:49:06,845 | INFO     | all job control threads have been joined
[2026-01-15 22:49:56] 2026-01-16 03:49:07,119 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 22:49:56] 2026-01-16 03:49:07,197 | INFO     | [payload] control thread has finished
[2026-01-15 22:49:56] 2026-01-16 03:49:07,258 | INFO     | [data] copytool_in thread has finished
[2026-01-15 22:49:56] 2026-01-16 03:49:07,478 | INFO     | [data] copytool_out thread has finished
[2026-01-15 22:49:56] 2026-01-16 03:49:07,496 | INFO     | [job] validate thread has finished
[2026-01-15 22:49:56] 2026-01-16 03:49:07,850 | INFO     | [job] control thread has finished
[2026-01-15 22:49:56] 2026-01-16 03:49:07,890 | INFO     | [payload] validate_post thread has finished
[2026-01-15 22:49:56] 2026-01-16 03:49:07,921 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 22:49:56] 2026-01-16 03:49:11,927 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 22:49:56] 2026-01-16 03:49:16,070 | INFO     | job.realtimelogging is not enabled
[2026-01-15 22:49:56] 2026-01-16 03:49:17,072 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 22:49:56] 2026-01-16 03:49:35,326 | INFO     | PID=9687 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-15 22:49:56] 2026-01-16 03:49:35,326 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 22:49:56] 2026-01-16 03:49:35,326 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 22:49:56] 2026-01-16 03:49:35,326 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 22:49:56] 2026-01-16 03:49:50,006 | INFO     | [monitor] cgroup control has ended
[2026-01-15 22:49:56] 2026-01-16 03:49:51,627 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140463725549376)>', '<ExcThread(monitor, started 140463147316992)>']
[2026-01-15 22:49:56] 2026-01-16 03:49:52,413 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 22:49:56] 2026-01-16 03:49:52,413 | INFO     | [monitor] control thread has ended
[2026-01-15 22:49:56] 2026-01-16 03:49:56,630 | INFO     | all workflow threads have been joined
[2026-01-15 22:49:56] 2026-01-16 03:49:56,630 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 22:49:56] 2026-01-16 03:49:56,630 | INFO     | traces error code: 0
[2026-01-15 22:49:56] 2026-01-16 03:49:56,631 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 22:49:56] 2026-01-16 03:49:56,711 [wrapper] ==== pilot stdout END ====
[2026-01-15 22:49:56] 2026-01-16 03:49:56,715 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 22:49:56] 2026-01-16 03:49:56,718 [wrapper] pilotpid: 9687
[2026-01-15 22:49:56] 2026-01-16 03:49:56,722 [wrapper] Pilot exit status: 0
[2026-01-15 22:49:56] 2026-01-16 03:49:56,736 [wrapper] pandaids: 6962319280
[2026-01-15 22:49:56] 2026-01-16 03:49:56,781 [wrapper] cleanup supervisor_pilot 24976 9688
[2026-01-15 22:49:56] 2026-01-16 03:49:56,785 [wrapper] Test setup, not cleaning
[2026-01-15 22:49:56] 2026-01-16 03:49:56,789 [wrapper] apfmon messages muted
[2026-01-15 22:49:56] 2026-01-16 03:49:56,793 [wrapper] ==== wrapper stdout END ====
[2026-01-15 22:49:56] 2026-01-16 03:49:56,796 [wrapper] ==== wrapper stderr END ====
[2026-01-15 22:49:56]  *** Error codes and diagnostics ***
[2026-01-15 22:49:56]     "exeErrorCode": 0,
[2026-01-15 22:49:56]     "exeErrorDiag": "",
[2026-01-15 22:49:56]     "pilotErrorCode": 0,
[2026-01-15 22:49:56]     "pilotErrorDiag": "",
[2026-01-15 22:49:56]  *** Listing of results directory ***
[2026-01-15 22:49:56] total 439752
[2026-01-15 22:49:56] -rwx------ 1 boincer umatlas     36322 Jan  7 15:59 runpilot2-wrapper.sh
[2026-01-15 22:49:56] -rw-r--r-- 1 boincer umatlas    579449 Jan  7 16:00 pilot3.tar.gz
[2026-01-15 22:49:56] -rw-r--r-- 1 boincer umatlas      5112 Jan  7 16:02 queuedata.json
[2026-01-15 22:49:56] -rw-r--r-- 1 boincer umatlas       100 Jan 15 21:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 22:49:56] -rwxr-xr-x 1 boincer umatlas      7986 Jan 15 21:13 run_atlas
[2026-01-15 22:49:56] -rw-r--r-- 1 boincer umatlas       105 Jan 15 21:13 job.xml
[2026-01-15 22:49:56] -rw-r--r-- 2 boincer umatlas 224020387 Jan 15 21:13 EVNT.47898824._000565.pool.root.1
[2026-01-15 22:49:56] -rw-r--r-- 2 boincer umatlas     15847 Jan 15 21:13 start_atlas.sh
[2026-01-15 22:49:56] drwxrwx--x 2 boincer umatlas      4096 Jan 15 21:13 shared
[2026-01-15 22:49:56] -rw-r--r-- 2 boincer umatlas    592404 Jan 15 21:13 input.tar.gz
[2026-01-15 22:49:56] -rw-r--r-- 1 boincer umatlas         0 Jan 15 21:13 boinc_lockfile
[2026-01-15 22:49:56] -rw-r--r-- 1 boincer umatlas      2519 Jan 15 21:13 pandaJob.out
[2026-01-15 22:49:56] -rw------- 1 boincer umatlas        57 Jan 15 21:13 setup.sh.local
[2026-01-15 22:49:56] -rw------- 1 boincer umatlas   1004075 Jan 15 21:13 agis_schedconf.cvmfs.json
[2026-01-15 22:49:56] -rw------- 1 boincer umatlas   1516246 Jan 15 21:13 agis_ddmendpoints.agis.ALL.json
[2026-01-15 22:49:56] drwx------ 5 boincer umatlas      4096 Jan 15 21:13 pilot3
[2026-01-15 22:49:56] -rw-r--r-- 1 boincer umatlas      5953 Jan 15 22:46 init_data.xml
[2026-01-15 22:49:56] -rw------- 1 boincer umatlas 219897225 Jan 15 22:48 HITS.47898826._013188.pool.root.1
[2026-01-15 22:49:56] -rw-r--r-- 1 boincer umatlas       529 Jan 15 22:48 boinc_task_state.xml
[2026-01-15 22:49:56] -rw------- 1 boincer umatlas      1048 Jan 15 22:48 memory_monitor_summary.json
[2026-01-15 22:49:56] -rw------- 1 boincer umatlas        95 Jan 15 22:48 pilot_heartbeat.json
[2026-01-15 22:49:56] -rw------- 1 boincer umatlas    414122 Jan 15 22:48 log.47898826._013188.job.log.tgz.1
[2026-01-15 22:49:56] -rw------- 1 boincer umatlas      7857 Jan 15 22:49 heartbeat.json
[2026-01-15 22:49:56] -rw-r--r-- 1 boincer umatlas      8192 Jan 15 22:49 boinc_mmap_file
[2026-01-15 22:49:56] -rw-r--r-- 1 boincer umatlas        27 Jan 15 22:49 wrapper_checkpoint.txt
[2026-01-15 22:49:56] -rw------- 1 boincer umatlas      4817 Jan 15 22:49 pilotlog.txt
[2026-01-15 22:49:56] -rw------- 1 boincer umatlas    816866 Jan 15 22:49 log.47898826._013188.job.log.1
[2026-01-15 22:49:56] -rw------- 1 boincer umatlas       357 Jan 15 22:49 output.list
[2026-01-15 22:49:56] -rw-r--r-- 1 boincer umatlas       620 Jan 15 22:49 runtime_log
[2026-01-15 22:49:56] -rw------- 1 boincer umatlas   1249280 Jan 15 22:49 result.tar.gz
[2026-01-15 22:49:56] -rw-r--r-- 1 boincer umatlas      9344 Jan 15 22:49 runtime_log.err
[2026-01-15 22:49:56] -rw------- 1 boincer umatlas       660 Jan 15 22:49 QGGNDmrnpx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmfidKDmyO5ltn.diag
[2026-01-15 22:49:56] -rw-r--r-- 1 boincer umatlas     21811 Jan 15 22:49 stderr.txt
[2026-01-15 22:49:56] HITS file was successfully produced:
[2026-01-15 22:49:56] -rw------- 1 boincer umatlas 219897225 Jan 15 22:48 shared/HITS.pool.root.1
[2026-01-15 22:49:56]  *** Contents of shared directory: ***
[2026-01-15 22:49:56] total 435332
[2026-01-15 22:49:56] -rw-r--r-- 2 boincer umatlas 224020387 Jan 15 21:13 ATLAS.root_0
[2026-01-15 22:49:56] -rw-r--r-- 2 boincer umatlas     15847 Jan 15 21:13 start_atlas.sh
[2026-01-15 22:49:56] -rw-r--r-- 2 boincer umatlas    592404 Jan 15 21:13 input.tar.gz
[2026-01-15 22:49:56] -rw------- 1 boincer umatlas 219897225 Jan 15 22:48 HITS.pool.root.1
[2026-01-15 22:49:56] -rw------- 1 boincer umatlas   1249280 Jan 15 22:49 result.tar.gz
22:49:58 (5588): run_atlas exited; CPU time 61220.787655
22:49:58 (5588): called boinc_finish(0)

</stderr_txt>
]]>

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