Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
23:17:41 (1604216): wrapper (7.7.26015): starting
23:17:41 (1604216): wrapper: running run_atlas (--nthreads 12)
[2026-01-15 23:17:41] Arguments: --nthreads 12
[2026-01-15 23:17:41] Threads: 12
[2026-01-15 23:17:41] Checking for CVMFS
[2026-01-15 23:17:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 23:17:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 23:17:41] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 23:17:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 23:17:41] 2.12.7.0 5110 1206 69380 155196 3 57 4003680 4194305 917 130560 0 3593321 99.997 45920 1339 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2026-01-15 23:17:41] CVMFS is ok
[2026-01-15 23:17:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 23:17:41] Checking for apptainer binary...
[2026-01-15 23:17:41] apptainer is not installed, using version from CVMFS
[2026-01-15 23:17:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 23:17:42] Trebeth
[2026-01-15 23:17:42] apptainer works
[2026-01-15 23:17:42] Set ATHENA_PROC_NUMBER=12
[2026-01-15 23:17:42] Set ATHENA_CORE_NUMBER=12
[2026-01-15 23:17:42] Starting ATLAS job with PandaID=6962317319
[2026-01-15 23:17:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-16 00:49:22]  *** The last 200 lines of the pilot log: ***
[2026-01-16 00:49:22]  is_tar=False
[2026-01-16 00:49:22]  lfn=log.47898826._012558.job.log.tgz.1
[2026-01-16 00:49:22]  mtime=0
[2026-01-16 00:49:22]  protocol_id=None
[2026-01-16 00:49:22]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-16 00:49:22]  replicas=None
[2026-01-16 00:49:22]  scope=mc23_13p6TeV
[2026-01-16 00:49:22]  status=None
[2026-01-16 00:49:22]  status_code=0
[2026-01-16 00:49:22]  storage_token=
[2026-01-16 00:49:22]  surl=/var/lib/boinc-client/slots/1/PanDA_Pilot-6962317319/log.47898826._012558.job.log.tgz.1
[2026-01-16 00:49:22]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/51/58/log.47898826._012558.job.log.tgz.1
[2026-01-16 00:49:22]  workdir=None
[2026-01-16 00:49:22] ]
[2026-01-16 00:49:22] 2026-01-16 05:48:43,539 | INFO     | transferring file log.47898826._012558.job.log.tgz.1 from /var/lib/boinc-client/slots/1/PanDA_Pilot-6962317319/log.47898826._012558.job.log.tgz.1 to /var/lib/boinc
[2026-01-16 00:49:22] 2026-01-16 05:48:43,539 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-6962317319/log.47898826._012558.job.log.tgz.1 /var/lib/boinc-client/slots/1/log.478988
[2026-01-16 00:49:22] 2026-01-16 05:48:43,550 | INFO     | adding to output.list: log.47898826._012558.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/51/58/log.47898826._012558.job.log.tg
[2026-01-16 00:49:22] 2026-01-16 05:48:43,551 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-16 00:49:22] 2026-01-16 05:48:43,551 | INFO     | summary of transferred files:
[2026-01-16 00:49:22] 2026-01-16 05:48:43,551 | INFO     |  -- lfn=log.47898826._012558.job.log.tgz.1, status_code=0, status=transferred
[2026-01-16 00:49:22] 2026-01-16 05:48:43,552 | INFO     | stage-out finished correctly
[2026-01-16 00:49:22] 2026-01-16 05:48:43,606 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-16 00:49:22] 2026-01-16 05:48:44,099 | INFO     | time since job start (5438s) is within the limit (174528.0s)
[2026-01-16 00:49:22] 2026-01-16 05:48:45,415 | INFO     | monitor loop #407: job 0:6962317319 is in state 'finished'
[2026-01-16 00:49:22] 2026-01-16 05:48:45,415 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 00:49:22] 2026-01-16 05:48:46,103 | INFO     | time since job start (5440s) is within the limit (174528.0s)
[2026-01-16 00:49:22] 2026-01-16 05:48:46,567 | INFO     | job 6962317319 has state=finished
[2026-01-16 00:49:22] 2026-01-16 05:48:46,567 | INFO     | preparing for final server update for job 6962317319 in state='finished'
[2026-01-16 00:49:22] 2026-01-16 05:48:46,567 | INFO     | this job has now completed (state=finished)
[2026-01-16 00:49:22] 2026-01-16 05:48:46,567 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-16 00:49:22] 2026-01-16 05:48:46,568 | INFO     | log transfer has been attempted: DONE
[2026-01-16 00:49:22] 2026-01-16 05:48:46,568 | INFO     | job 6962317319 has finished - writing final server update
[2026-01-16 00:49:22] 2026-01-16 05:48:46,568 | INFO     | total number of processed events: 400 (read)
[2026-01-16 00:49:22] 2026-01-16 05:48:46,569 | INFO     | executing command: lscpu
[2026-01-16 00:49:22] 2026-01-16 05:48:46,624 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-16 00:49:22] 2026-01-16 05:48:47,918 | INFO     | monitor loop #408: job 0:6962317319 is in state 'finished'
[2026-01-16 00:49:22] 2026-01-16 05:48:47,919 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 00:49:22] 2026-01-16 05:48:48,107 | INFO     | time since job start (5442s) is within the limit (174528.0s)
[2026-01-16 00:49:22] 2026-01-16 05:48:49,518 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-16 00:49:22] 2026-01-16 05:48:49,526 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3026.920589285713
[2026-01-16 00:49:22] 2026-01-16 05:48:49,535 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6962317319/memory_monitor_summary.json (trf name=prmon)
[2026-01-16 00:49:22] 2026-01-16 05:48:49,536 | INFO     | extracted standard info from prmon json
[2026-01-16 00:49:22] 2026-01-16 05:48:49,536 | INFO     | extracted standard memory fields from prmon json
[2026-01-16 00:49:22] 2026-01-16 05:48:49,536 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-16 00:49:22] 2026-01-16 05:48:49,536 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-16 00:49:22] 2026-01-16 05:48:49,536 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-16 00:49:22] 2026-01-16 05:48:49,538 | INFO     | fitting pss+swap vs Time
[2026-01-16 00:49:22] 2026-01-16 05:48:49,538 | INFO     | sum of square deviations: 170944600.5
[2026-01-16 00:49:22] 2026-01-16 05:48:49,539 | INFO     | sum of deviations: -13345313765.5
[2026-01-16 00:49:22] 2026-01-16 05:48:49,539 | INFO     | mean x: 1768539883.5
[2026-01-16 00:49:22] 2026-01-16 05:48:49,539 | INFO     | mean y: 2859345.1829268294
[2026-01-16 00:49:22] 2026-01-16 05:48:49,539 | INFO     | intersect: 138069341603.61682
[2026-01-16 00:49:22] 2026-01-16 05:48:49,539 | INFO     | chi2: 0.15312673085013062
[2026-01-16 00:49:22] 2026-01-16 05:48:49,539 | INFO     | current memory leak: -78.07 B/s (using 82 data points, chi2=0.15)
[2026-01-16 00:49:22] 2026-01-16 05:48:49,540 | INFO     | could have reported an average CPU frequency of 3043 MHz (7 samples)
[2026-01-16 00:49:22] 2026-01-16 05:48:49,540 | INFO     | ..............................
[2026-01-16 00:49:22] 2026-01-16 05:48:49,540 | INFO     | . Timing measurements:
[2026-01-16 00:49:22] 2026-01-16 05:48:49,540 | INFO     | . get job = 0 s
[2026-01-16 00:49:22] 2026-01-16 05:48:49,540 | INFO     | . initial setup = 18 s
[2026-01-16 00:49:22] 2026-01-16 05:48:49,540 | INFO     | . payload setup = 4 s
[2026-01-16 00:49:22] 2026-01-16 05:48:49,540 | INFO     | . stage-in = 0 s
[2026-01-16 00:49:22] 2026-01-16 05:48:49,540 | INFO     | . payload execution = 5414 s
[2026-01-16 00:49:22] 2026-01-16 05:48:49,540 | INFO     | . stage-out = 0 s
[2026-01-16 00:49:22] 2026-01-16 05:48:49,541 | INFO     | . log creation = 0 s
[2026-01-16 00:49:22] 2026-01-16 05:48:49,541 | INFO     | ..............................
[2026-01-16 00:49:22] 2026-01-16 05:48:49,622 | INFO     | 
[2026-01-16 00:49:22] 2026-01-16 05:48:49,622 | INFO     | job summary report
[2026-01-16 00:49:22] 2026-01-16 05:48:49,622 | INFO     | --------------------------------------------------
[2026-01-16 00:49:22] 2026-01-16 05:48:49,622 | INFO     | PanDA job id: 6962317319
[2026-01-16 00:49:22] 2026-01-16 05:48:49,622 | INFO     | task id: 47898826
[2026-01-16 00:49:22] 2026-01-16 05:48:49,622 | INFO     | errors: (none)
[2026-01-16 00:49:22] 2026-01-16 05:48:49,622 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-16 00:49:22] 2026-01-16 05:48:49,622 | INFO     | pilot state: finished 
[2026-01-16 00:49:22] 2026-01-16 05:48:49,622 | INFO     | transexitcode: 0
[2026-01-16 00:49:22] 2026-01-16 05:48:49,622 | INFO     | exeerrorcode: 0
[2026-01-16 00:49:22] 2026-01-16 05:48:49,622 | INFO     | exeerrordiag: 
[2026-01-16 00:49:22] 2026-01-16 05:48:49,622 | INFO     | exitcode: 0
[2026-01-16 00:49:22] 2026-01-16 05:48:49,622 | INFO     | exitmsg: OK
[2026-01-16 00:49:22] 2026-01-16 05:48:49,623 | INFO     | cpuconsumptiontime: 57440 s
[2026-01-16 00:49:22] 2026-01-16 05:48:49,623 | INFO     | nevents: 400
[2026-01-16 00:49:22] 2026-01-16 05:48:49,623 | INFO     | neventsw: 0
[2026-01-16 00:49:22] 2026-01-16 05:48:49,623 | INFO     | pid: 1615242
[2026-01-16 00:49:22] 2026-01-16 05:48:49,623 | INFO     | pgrp: 1615242
[2026-01-16 00:49:22] 2026-01-16 05:48:49,623 | INFO     | corecount: 12
[2026-01-16 00:49:22] 2026-01-16 05:48:49,623 | INFO     | event service: False
[2026-01-16 00:49:22] 2026-01-16 05:48:49,623 | INFO     | sizes: {0: 2283804, 1: 2284003, 4: 2284265, 11: 2284293, 5422: 2310888, 5423: 2320278, 5429: 2320246}
[2026-01-16 00:49:22] 2026-01-16 05:48:49,623 | INFO     | --------------------------------------------------
[2026-01-16 00:49:22] 2026-01-16 05:48:49,623 | INFO     | 
[2026-01-16 00:49:22] 2026-01-16 05:48:49,623 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2026-01-16 00:49:22] 2026-01-16 05:48:49,638 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-16 00:49:22] 2026-01-16 05:48:49,639 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-16 00:49:22] 2026-01-16 05:48:49,639 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-16 00:49:22] 2026-01-16 05:48:49,639 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-16 00:49:22] 2026-01-16 05:48:49,639 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-16 00:49:22] 2026-01-16 05:48:49,639 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-16 00:49:22] 2026-01-16 05:48:49,639 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-16 00:49:22] 2026-01-16 05:48:49,639 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-16 00:49:22] 2026-01-16 05:48:49,639 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-16 00:49:22] 2026-01-16 05:48:49,640 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-16 00:49:22] 2026-01-16 05:48:49,640 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-16 00:49:22] 2026-01-16 05:48:49,640 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-16 00:49:22] 2026-01-16 05:48:49,640 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-16 00:49:22] 2026-01-16 05:48:49,640 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-16 00:49:22] 2026-01-16 05:48:49,640 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-16 00:49:22] 2026-01-16 05:48:49,640 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-16 00:49:22] 2026-01-16 05:48:49,640 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-16 00:49:22] 2026-01-16 05:48:49,640 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-16 00:49:22] 2026-01-16 05:48:49,640 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-16 00:49:22] 2026-01-16 05:48:49,640 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-16 00:49:22] 2026-01-16 05:48:49,641 | INFO     | job 6962317319 has completed (purged errors)
[2026-01-16 00:49:22] 2026-01-16 05:48:49,641 | INFO     | overall cleanup function is called
[2026-01-16 00:49:22] 2026-01-16 05:48:50,646 | INFO     | --- collectZombieJob: --- 10, [1615242]
[2026-01-16 00:49:22] 2026-01-16 05:48:50,647 | INFO     | zombie collector waiting for pid 1615242
[2026-01-16 00:49:22] 2026-01-16 05:48:50,647 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-16 00:49:22] 2026-01-16 05:48:50,647 | INFO     | collected zombie processes
[2026-01-16 00:49:22] 2026-01-16 05:48:50,647 | INFO     | will attempt to kill all subprocesses of pid=1615242
[2026-01-16 00:49:22] 2026-01-16 05:48:50,853 | INFO     | process IDs to be killed: [1615242] (in reverse order)
[2026-01-16 00:49:22] 2026-01-16 05:48:50,924 | WARNING  | found no corresponding commands to process id(s)
[2026-01-16 00:49:22] 2026-01-16 05:48:50,924 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-16 00:49:22] 2026-01-16 05:48:50,930 | INFO     | did not find any defunct processes belonging to 1615242
[2026-01-16 00:49:22] 2026-01-16 05:48:50,935 | INFO     | did not find any defunct processes belonging to 1615242
[2026-01-16 00:49:22] 2026-01-16 05:48:50,935 | INFO     | ready for new job
[2026-01-16 00:49:22] 2026-01-16 05:48:50,935 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-16 00:49:22] 2026-01-16 05:48:50,936 | INFO     | ***************************************
[2026-01-16 00:49:22] 2026-01-16 05:48:50,937 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-16 00:49:22] 2026-01-16 05:48:50,937 | INFO     | ***************************************
[2026-01-16 00:49:22] 2026-01-16 05:48:50,937 | INFO     | 
[2026-01-16 00:49:22] 2026-01-16 05:48:50,957 | INFO     | architecture information:
[2026-01-16 00:49:22] 2026-01-16 05:48:50,958 | INFO     | executing command: cat /etc/os-release
[2026-01-16 00:49:22] 2026-01-16 05:48:50,970 | INFO     | cat /etc/os-release:
[2026-01-16 00:49:22] NAME="CentOS Linux"
[2026-01-16 00:49:22] VERSION="7 (Core)"
[2026-01-16 00:49:22] ID="centos"
[2026-01-16 00:49:22] ID_LIKE="rhel fedora"
[2026-01-16 00:49:22] VERSION_ID="7"
[2026-01-16 00:49:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-16 00:49:22] ANSI_COLOR="0;31"
[2026-01-16 00:49:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-16 00:49:22] HOME_URL="https://www.centos.org/"
[2026-01-16 00:49:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-16 00:49:22] 
[2026-01-16 00:49:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-16 00:49:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-16 00:49:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-16 00:49:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-16 00:49:22] 
[2026-01-16 00:49:22] 2026-01-16 05:48:50,971 | INFO     | ***************************************
[2026-01-16 00:49:22] 2026-01-16 05:48:51,474 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2026-01-16 00:49:22] 2026-01-16 05:48:51,490 | INFO     | sufficient remaining disk space (393780133888 B)
[2026-01-16 00:49:22] 2026-01-16 05:48:51,490 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-16 00:49:22] 2026-01-16 05:48:51,490 | INFO     | current server update state: UPDATING_FINAL
[2026-01-16 00:49:22] 2026-01-16 05:48:51,491 | INFO     | update_server=False
[2026-01-16 00:49:22] 2026-01-16 05:48:51,491 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-16 00:49:22] 2026-01-16 05:48:51,491 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-16 00:49:22] 2026-01-16 05:48:51,491 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-16 00:49:22] 2026-01-16 05:48:51,491 | INFO     | aborting loop
[2026-01-16 00:49:22] 2026-01-16 05:48:51,613 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-16 00:49:22] 2026-01-16 05:48:51,666 | INFO     | all data control threads have been joined
[2026-01-16 00:49:22] 2026-01-16 05:48:52,117 | INFO     | all job control threads have been joined
[2026-01-16 00:49:22] 2026-01-16 05:48:52,230 | INFO     | all payload control threads have been joined
[2026-01-16 00:49:22] 2026-01-16 05:48:52,495 | INFO     | [job] job monitor thread has finished
[2026-01-16 00:49:22] 2026-01-16 05:48:52,495 | INFO     | [job] retrieve thread has finished
[2026-01-16 00:49:22] 2026-01-16 05:48:52,497 | INFO     | [job] queue monitor thread has finished
[2026-01-16 00:49:22] 2026-01-16 05:48:52,670 | INFO     | [data] control thread has finished
[2026-01-16 00:49:22] 2026-01-16 05:48:52,870 | INFO     | [payload] execute_payloads thread has finished
[2026-01-16 00:49:22] 2026-01-16 05:48:52,918 | INFO     | [job] validate thread has finished
[2026-01-16 00:49:22] 2026-01-16 05:48:53,118 | INFO     | [job] control thread has finished
[2026-01-16 00:49:22] 2026-01-16 05:48:53,154 | INFO     | [job] create_data_payload thread has finished
[2026-01-16 00:49:22] 2026-01-16 05:48:53,198 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-16 00:49:22] 2026-01-16 05:48:53,234 | INFO     | [payload] control thread has finished
[2026-01-16 00:49:22] 2026-01-16 05:48:53,258 | INFO     | [payload] validate_pre thread has finished
[2026-01-16 00:49:22] 2026-01-16 05:48:53,415 | INFO     | [data] copytool_in thread has finished
[2026-01-16 00:49:22] 2026-01-16 05:48:53,514 | INFO     | [payload] validate_post thread has finished
[2026-01-16 00:49:22] 2026-01-16 05:48:53,618 | INFO     | [data] copytool_out thread has finished
[2026-01-16 00:49:22] 2026-01-16 05:48:53,619 | INFO     | [payload] failed_post thread has finished
[2026-01-16 00:49:22] 2026-01-16 05:48:54,193 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-16 00:49:22] 2026-01-16 05:48:58,198 | INFO     | [data] queue_monitor thread has finished
[2026-01-16 00:49:22] 2026-01-16 05:49:15,262 | INFO     | [monitor] cgroup control has ended
[2026-01-16 00:49:22] 2026-01-16 05:49:17,034 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140356769642304)>', '<ExcThread(monitor, started 140356469368576)>']
[2026-01-16 00:49:22] 2026-01-16 05:49:21,380 | INFO     | PID=1608220 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-16 00:49:22] 2026-01-16 05:49:21,380 | INFO     | .. there are 2 such processes running
[2026-01-16 00:49:22] 2026-01-16 05:49:21,381 | INFO     | found 0 job(s) in 20 queues
[2026-01-16 00:49:22] 2026-01-16 05:49:21,381 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-16 00:49:22] 2026-01-16 05:49:21,381 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-16 00:49:22] 2026-01-16 05:49:21,381 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-16 00:49:22] 2026-01-16 05:49:21,381 | INFO     | [monitor] control thread has ended
[2026-01-16 00:49:22] 2026-01-16 05:49:22,058 | INFO     | all workflow threads have been joined
[2026-01-16 00:49:22] 2026-01-16 05:49:22,059 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-16 00:49:22] 2026-01-16 05:49:22,059 | INFO     | traces error code: 0
[2026-01-16 00:49:22] 2026-01-16 05:49:22,059 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-16 00:49:22] 2026-01-16 05:49:22,166 [wrapper] ==== pilot stdout END ====
[2026-01-16 00:49:22] 2026-01-16 05:49:22,168 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-16 00:49:22] 2026-01-16 05:49:22,170 [wrapper] pilotpid: 1608220
[2026-01-16 00:49:22] 2026-01-16 05:49:22,172 [wrapper] Pilot exit status: 0
[2026-01-16 00:49:22] 2026-01-16 05:49:22,179 [wrapper] pandaids: 6962317319
[2026-01-16 00:49:22] 2026-01-16 05:49:22,217 [wrapper] cleanup supervisor_pilot 1669080 1608221
[2026-01-16 00:49:22] 2026-01-16 05:49:22,219 [wrapper] Test setup, not cleaning
[2026-01-16 00:49:22] 2026-01-16 05:49:22,220 [wrapper] apfmon messages muted
[2026-01-16 00:49:22] 2026-01-16 05:49:22,222 [wrapper] ==== wrapper stdout END ====
[2026-01-16 00:49:22] 2026-01-16 05:49:22,223 [wrapper] ==== wrapper stderr END ====
[2026-01-16 00:49:22]  *** Error codes and diagnostics ***
[2026-01-16 00:49:22]     "exeErrorCode": 0,
[2026-01-16 00:49:22]     "exeErrorDiag": "",
[2026-01-16 00:49:22]     "pilotErrorCode": 0,
[2026-01-16 00:49:22]     "pilotErrorDiag": "",
[2026-01-16 00:49:22]  *** Listing of results directory ***
[2026-01-16 00:49:22] total 443672
[2026-01-16 00:49:22] -rwx------ 1 boinc boinc     36322 Jan  7 15:56 runpilot2-wrapper.sh
[2026-01-16 00:49:22] -rw-r--r-- 1 boinc boinc      5112 Jan  7 15:59 queuedata.json
[2026-01-16 00:49:22] -rw-r--r-- 1 boinc boinc    579449 Jan  7 16:00 pilot3.tar.gz
[2026-01-16 00:49:22] -rw-r--r-- 1 boinc boinc       100 Jan 15 23:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-16 00:49:22] -rwxr-xr-x 1 boinc boinc      7986 Jan 15 23:17 run_atlas
[2026-01-16 00:49:22] -rw-r--r-- 1 boinc boinc       105 Jan 15 23:17 job.xml
[2026-01-16 00:49:22] -rw-r--r-- 1 boinc boinc      7579 Jan 15 23:17 init_data.xml
[2026-01-16 00:49:22] -rw-r--r-- 2 boinc boinc 226124073 Jan 15 23:17 EVNT.47898824._000532.pool.root.1
[2026-01-16 00:49:22] -rw-r--r-- 2 boinc boinc     15847 Jan 15 23:17 start_atlas.sh
[2026-01-16 00:49:22] drwxrwx--x 2 boinc boinc      4096 Jan 15 23:17 shared
[2026-01-16 00:49:22] -rw-r--r-- 2 boinc boinc    592394 Jan 15 23:17 input.tar.gz
[2026-01-16 00:49:22] -rw-r--r-- 1 boinc boinc         0 Jan 15 23:17 boinc_lockfile
[2026-01-16 00:49:22] -rw-r--r-- 1 boinc boinc      2518 Jan 15 23:17 pandaJob.out
[2026-01-16 00:49:22] -rw------- 1 boinc boinc        50 Jan 15 23:17 setup.sh.local
[2026-01-16 00:49:22] -rw------- 1 boinc boinc   1004075 Jan 15 23:17 agis_schedconf.cvmfs.json
[2026-01-16 00:49:22] -rw------- 1 boinc boinc   1516246 Jan 15 23:18 agis_ddmendpoints.agis.ALL.json
[2026-01-16 00:49:22] drwx------ 5 boinc boinc      4096 Jan 15 23:18 pilot3
[2026-01-16 00:49:22] -rw------- 1 boinc boinc 221837203 Jan 16 00:48 HITS.47898826._012558.pool.root.1
[2026-01-16 00:49:22] -rw------- 1 boinc boinc      1024 Jan 16 00:48 memory_monitor_summary.json
[2026-01-16 00:49:22] -rw-r--r-- 1 boinc boinc       529 Jan 16 00:48 boinc_task_state.xml
[2026-01-16 00:49:22] -rw------- 1 boinc boinc    403178 Jan 16 00:48 log.47898826._012558.job.log.tgz.1
[2026-01-16 00:49:22] -rw------- 1 boinc boinc      7782 Jan 16 00:48 heartbeat.json
[2026-01-16 00:49:22] -rw-r--r-- 1 boinc boinc        27 Jan 16 00:49 wrapper_checkpoint.txt
[2026-01-16 00:49:22] -rw-r--r-- 1 boinc boinc      8192 Jan 16 00:49 boinc_mmap_file
[2026-01-16 00:49:22] -rw------- 1 boinc boinc        95 Jan 16 00:49 pilot_heartbeat.json
[2026-01-16 00:49:22] -rw------- 1 boinc boinc      4831 Jan 16 00:49 pilotlog.txt
[2026-01-16 00:49:22] -rw------- 1 boinc boinc    807795 Jan 16 00:49 log.47898826._012558.job.log.1
[2026-01-16 00:49:22] -rw------- 1 boinc boinc       357 Jan 16 00:49 output.list
[2026-01-16 00:49:22] -rw-r--r-- 1 boinc boinc       620 Jan 16 00:49 runtime_log
[2026-01-16 00:49:22] -rw------- 1 boinc boinc   1228800 Jan 16 00:49 result.tar.gz
[2026-01-16 00:49:22] -rw-r--r-- 1 boinc boinc      9404 Jan 16 00:49 runtime_log.err
[2026-01-16 00:49:22] -rw------- 1 boinc boinc       651 Jan 16 00:49 r9ELDmBlpx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmvedKDmATqqTo.diag
[2026-01-16 00:49:22] -rw-r--r-- 1 boinc boinc     21338 Jan 16 00:49 stderr.txt
[2026-01-16 00:49:22] HITS file was successfully produced:
[2026-01-16 00:49:22] -rw------- 1 boinc boinc 221837203 Jan 16 00:48 shared/HITS.pool.root.1
[2026-01-16 00:49:22]  *** Contents of shared directory: ***
[2026-01-16 00:49:22] total 439272
[2026-01-16 00:49:22] -rw-r--r-- 2 boinc boinc 226124073 Jan 15 23:17 ATLAS.root_0
[2026-01-16 00:49:22] -rw-r--r-- 2 boinc boinc     15847 Jan 15 23:17 start_atlas.sh
[2026-01-16 00:49:22] -rw-r--r-- 2 boinc boinc    592394 Jan 15 23:17 input.tar.gz
[2026-01-16 00:49:22] -rw------- 1 boinc boinc 221837203 Jan 16 00:48 HITS.pool.root.1
[2026-01-16 00:49:22] -rw------- 1 boinc boinc   1228800 Jan 16 00:49 result.tar.gz
00:49:24 (1604216): run_atlas exited; CPU time 57539.918419
00:49:24 (1604216): called boinc_finish(0)

</stderr_txt>
]]>

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