Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
16:10:42 (1062599): wrapper (7.7.26015): starting
16:10:42 (1062599): wrapper: running run_atlas (--nthreads 4)
[2026-01-15 16:10:42] Arguments: --nthreads 4
[2026-01-15 16:10:42] Threads: 4
[2026-01-15 16:10:42] Checking for CVMFS
[2026-01-15 16:10:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 16:10:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 16:10:42] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 16:10:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 16:10:43] 2.13.3.0 3426809 2205 52776 155185 1 188 3631200 6144000 6454 130560 0 14392260 99.998 85515 936 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://192.168.1.30:3128 1
[2026-01-15 16:10:43] CVMFS is ok
[2026-01-15 16:10:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 16:10:43] Checking for apptainer binary...
[2026-01-15 16:10:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 16:10:43] Running /usr/bin/apptainer --version
[2026-01-15 16:10:43] apptainer version 1.4.5
[2026-01-15 16:10:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 16:10:43] Starfish-Cruncher
[2026-01-15 16:10:43] apptainer works
[2026-01-15 16:10:43] Set ATHENA_PROC_NUMBER=4
[2026-01-15 16:10:43] Set ATHENA_CORE_NUMBER=4
[2026-01-15 16:10:43] Starting ATLAS job with PandaID=6970539250
[2026-01-15 16:10:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 17:04:03]  *** The last 200 lines of the pilot log: ***
[2026-01-15 17:04:03]  lfn=log.48215263._050860.job.log.tgz.1
[2026-01-15 17:04:03]  mtime=0
[2026-01-15 17:04:03]  protocol_id=None
[2026-01-15 17:04:03]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-15 17:04:03]  replicas=None
[2026-01-15 17:04:03]  scope=mc23_13p6TeV
[2026-01-15 17:04:03]  status=None
[2026-01-15 17:04:03]  status_code=0
[2026-01-15 17:04:03]  storage_token=
[2026-01-15 17:04:03]  surl=/var/lib/boinc-client/slots/7/PanDA_Pilot-6970539250/log.48215263._050860.job.log.tgz.1
[2026-01-15 17:04:03]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3e/e9/log.48215263._050860.job.log.tgz.1
[2026-01-15 17:04:03]  workdir=None
[2026-01-15 17:04:03] ]
[2026-01-15 17:04:03] 2026-01-15 23:02:49,684 | INFO     | transferring file log.48215263._050860.job.log.tgz.1 from /var/lib/boinc-client/slots/7/PanDA_Pilot-6970539250/log.48215263._050860.job.log.tgz.1 to /var/lib/boinc
[2026-01-15 17:04:03] 2026-01-15 23:02:49,684 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/7/PanDA_Pilot-6970539250/log.48215263._050860.job.log.tgz.1 /var/lib/boinc-client/slots/7/log.482152
[2026-01-15 17:04:03] 2026-01-15 23:02:49,698 | INFO     | adding to output.list: log.48215263._050860.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3e/e9/log.48215263._050860.job.log.tg
[2026-01-15 17:04:03] 2026-01-15 23:02:49,698 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-15 17:04:03] 2026-01-15 23:02:49,698 | INFO     | summary of transferred files:
[2026-01-15 17:04:03] 2026-01-15 23:02:49,699 | INFO     |  -- lfn=log.48215263._050860.job.log.tgz.1, status_code=0, status=transferred
[2026-01-15 17:04:03] 2026-01-15 23:02:49,699 | INFO     | stage-out finished correctly
[2026-01-15 17:04:03] 2026-01-15 23:02:50,125 | INFO     | time since job start (3118s) is within the limit (349056.0s)
[2026-01-15 17:04:03] 2026-01-15 23:02:50,584 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-15 17:04:03] 2026-01-15 23:02:51,137 | INFO     | job 6970539250 has state=finished
[2026-01-15 17:04:03] 2026-01-15 23:02:51,137 | INFO     | preparing for final server update for job 6970539250 in state='finished'
[2026-01-15 17:04:03] 2026-01-15 23:02:51,138 | INFO     | this job has now completed (state=finished)
[2026-01-15 17:04:03] 2026-01-15 23:02:51,138 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-15 17:04:03] 2026-01-15 23:02:51,138 | INFO     | log transfer has been attempted: DONE
[2026-01-15 17:04:03] 2026-01-15 23:02:51,138 | INFO     | job 6970539250 has finished - writing final server update
[2026-01-15 17:04:03] 2026-01-15 23:02:51,138 | INFO     | total number of processed events: 400 (read)
[2026-01-15 17:04:03] 2026-01-15 23:02:51,139 | INFO     | executing command: lscpu
[2026-01-15 17:04:03] 2026-01-15 23:02:51,167 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-15 17:04:03] 2026-01-15 23:02:52,131 | INFO     | time since job start (3120s) is within the limit (349056.0s)
[2026-01-15 17:04:03] 2026-01-15 23:02:54,136 | INFO     | time since job start (3122s) is within the limit (349056.0s)
[2026-01-15 17:04:03] 2026-01-15 23:02:54,819 | WARNING  | process 1073313 can no longer be monitored (due to stat problems) - aborting
[2026-01-15 17:04:03] 2026-01-15 23:02:54,819 | INFO     | using path: /var/lib/boinc-client/slots/7/PanDA_Pilot-6970539250/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 17:04:03] 2026-01-15 23:02:54,914 | INFO     | number of running child processes to parent process 1073313: 1
[2026-01-15 17:04:03] 2026-01-15 23:02:54,914 | INFO     | maximum number of monitored processes: 6
[2026-01-15 17:04:03] 2026-01-15 23:02:56,138 | INFO     | time since job start (3124s) is within the limit (349056.0s)
[2026-01-15 17:04:03] 2026-01-15 23:02:56,318 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-15 17:04:03] 2026-01-15 23:02:56,321 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 2699.61075
[2026-01-15 17:04:03] 2026-01-15 23:02:56,324 | INFO     | using path: /var/lib/boinc-client/slots/7/PanDA_Pilot-6970539250/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 17:04:03] 2026-01-15 23:02:56,324 | INFO     | extracted standard info from prmon json
[2026-01-15 17:04:03] 2026-01-15 23:02:56,324 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 17:04:03] 2026-01-15 23:02:56,324 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 17:04:03] 2026-01-15 23:02:56,325 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 17:04:03] 2026-01-15 23:02:56,325 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 17:04:03] 2026-01-15 23:02:56,325 | INFO     | fitting pss+swap vs Time
[2026-01-15 17:04:03] 2026-01-15 23:02:56,325 | INFO     | sum of square deviations: 26400495.0
[2026-01-15 17:04:03] 2026-01-15 23:02:56,326 | INFO     | sum of deviations: 758686432.4999999
[2026-01-15 17:04:03] 2026-01-15 23:02:56,326 | INFO     | mean x: 1768516692.5
[2026-01-15 17:04:03] 2026-01-15 23:02:56,326 | INFO     | mean y: 2344042.5681818184
[2026-01-15 17:04:03] 2026-01-15 23:02:56,326 | INFO     | intersect: -50820552280.001686
[2026-01-15 17:04:03] 2026-01-15 23:02:56,326 | INFO     | chi2: 0.001007199406233243
[2026-01-15 17:04:03] 2026-01-15 23:02:56,326 | INFO     | current memory leak: 28.74 B/s (using 44 data points, chi2=0.00)
[2026-01-15 17:04:03] 2026-01-15 23:02:56,326 | INFO     | could have reported an average CPU frequency of 3385 MHz (5 samples)
[2026-01-15 17:04:03] 2026-01-15 23:02:56,326 | INFO     | ..............................
[2026-01-15 17:04:03] 2026-01-15 23:02:56,326 | INFO     | . Timing measurements:
[2026-01-15 17:04:03] 2026-01-15 23:02:56,326 | INFO     | . get job = 0 s
[2026-01-15 17:04:03] 2026-01-15 23:02:56,326 | INFO     | . initial setup = 2 s
[2026-01-15 17:04:03] 2026-01-15 23:02:56,326 | INFO     | . payload setup = 4 s
[2026-01-15 17:04:03] 2026-01-15 23:02:56,326 | INFO     | . stage-in = 0 s
[2026-01-15 17:04:03] 2026-01-15 23:02:56,326 | INFO     | . payload execution = 3093 s
[2026-01-15 17:04:03] 2026-01-15 23:02:56,326 | INFO     | . stage-out = 0 s
[2026-01-15 17:04:03] 2026-01-15 23:02:56,326 | INFO     | . log creation = 0 s
[2026-01-15 17:04:03] 2026-01-15 23:02:56,326 | INFO     | ..............................
[2026-01-15 17:04:03] 2026-01-15 23:02:56,504 | INFO     | 
[2026-01-15 17:04:03] 2026-01-15 23:02:56,504 | INFO     | job summary report
[2026-01-15 17:04:03] 2026-01-15 23:02:56,504 | INFO     | --------------------------------------------------
[2026-01-15 17:04:03] 2026-01-15 23:02:56,504 | INFO     | PanDA job id: 6970539250
[2026-01-15 17:04:03] 2026-01-15 23:02:56,504 | INFO     | task id: 48215263
[2026-01-15 17:04:03] 2026-01-15 23:02:56,504 | INFO     | errors: (none)
[2026-01-15 17:04:03] 2026-01-15 23:02:56,504 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-15 17:04:03] 2026-01-15 23:02:56,504 | INFO     | pilot state: finished 
[2026-01-15 17:04:03] 2026-01-15 23:02:56,504 | INFO     | transexitcode: 0
[2026-01-15 17:04:03] 2026-01-15 23:02:56,504 | INFO     | exeerrorcode: 0
[2026-01-15 17:04:03] 2026-01-15 23:02:56,504 | INFO     | exeerrordiag: 
[2026-01-15 17:04:03] 2026-01-15 23:02:56,504 | INFO     | exitcode: 0
[2026-01-15 17:04:03] 2026-01-15 23:02:56,504 | INFO     | exitmsg: OK
[2026-01-15 17:04:03] 2026-01-15 23:02:56,504 | INFO     | cpuconsumptiontime: 11642 s
[2026-01-15 17:04:03] 2026-01-15 23:02:56,504 | INFO     | nevents: 400
[2026-01-15 17:04:03] 2026-01-15 23:02:56,504 | INFO     | neventsw: 0
[2026-01-15 17:04:03] 2026-01-15 23:02:56,504 | INFO     | pid: 1073313
[2026-01-15 17:04:03] 2026-01-15 23:02:56,504 | INFO     | pgrp: 1073313
[2026-01-15 17:04:03] 2026-01-15 23:02:56,504 | INFO     | corecount: 4
[2026-01-15 17:04:03] 2026-01-15 23:02:56,505 | INFO     | event service: False
[2026-01-15 17:04:03] 2026-01-15 23:02:56,505 | INFO     | sizes: {0: 2283124, 1: 2283987, 4: 2284249, 12: 2284277, 3101: 2309801, 3102: 2318813, 3103: 2318997, 3109: 2319223}
[2026-01-15 17:04:03] 2026-01-15 23:02:56,505 | INFO     | --------------------------------------------------
[2026-01-15 17:04:03] 2026-01-15 23:02:56,505 | INFO     | 
[2026-01-15 17:04:03] 2026-01-15 23:02:56,505 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/7
[2026-01-15 17:04:03] 2026-01-15 23:02:56,519 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 17:04:03] 2026-01-15 23:02:56,519 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 17:04:03] 2026-01-15 23:02:56,519 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 17:04:03] 2026-01-15 23:02:56,519 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 17:04:03] 2026-01-15 23:02:56,519 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 17:04:03] 2026-01-15 23:02:56,519 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 17:04:03] 2026-01-15 23:02:56,519 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 17:04:03] 2026-01-15 23:02:56,519 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 17:04:03] 2026-01-15 23:02:56,519 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 17:04:03] 2026-01-15 23:02:56,519 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 17:04:03] 2026-01-15 23:02:56,519 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 17:04:03] 2026-01-15 23:02:56,519 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 17:04:03] 2026-01-15 23:02:56,519 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 17:04:03] 2026-01-15 23:02:56,519 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 17:04:03] 2026-01-15 23:02:56,520 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 17:04:03] 2026-01-15 23:02:56,520 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 17:04:03] 2026-01-15 23:02:56,520 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 17:04:03] 2026-01-15 23:02:56,520 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 17:04:03] 2026-01-15 23:02:56,520 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 17:04:03] 2026-01-15 23:02:56,520 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 17:04:03] 2026-01-15 23:02:56,520 | INFO     | job 6970539250 has completed (purged errors)
[2026-01-15 17:04:03] 2026-01-15 23:02:56,520 | INFO     | overall cleanup function is called
[2026-01-15 17:04:03] 2026-01-15 23:02:57,527 | INFO     | --- collectZombieJob: --- 10, [1073313]
[2026-01-15 17:04:03] 2026-01-15 23:02:57,527 | INFO     | zombie collector waiting for pid 1073313
[2026-01-15 17:04:03] 2026-01-15 23:02:57,527 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 17:04:03] 2026-01-15 23:02:57,527 | INFO     | collected zombie processes
[2026-01-15 17:04:03] 2026-01-15 23:02:57,527 | INFO     | will attempt to kill all subprocesses of pid=1073313
[2026-01-15 17:04:03] 2026-01-15 23:02:57,625 | INFO     | process IDs to be killed: [1073313] (in reverse order)
[2026-01-15 17:04:03] 2026-01-15 23:02:57,670 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 17:04:03] 2026-01-15 23:02:57,670 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 17:04:03] 2026-01-15 23:02:57,673 | INFO     | did not find any defunct processes belonging to 1073313
[2026-01-15 17:04:03] 2026-01-15 23:02:57,675 | INFO     | did not find any defunct processes belonging to 1073313
[2026-01-15 17:04:03] 2026-01-15 23:02:57,675 | INFO     | ready for new job
[2026-01-15 17:04:03] 2026-01-15 23:02:57,675 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 17:04:03] 2026-01-15 23:02:57,676 | INFO     | ***************************************
[2026-01-15 17:04:03] 2026-01-15 23:02:57,676 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 17:04:03] 2026-01-15 23:02:57,677 | INFO     | ***************************************
[2026-01-15 17:04:03] 2026-01-15 23:02:57,677 | INFO     | 
[2026-01-15 17:04:03] 2026-01-15 23:02:57,678 | INFO     | architecture information:
[2026-01-15 17:04:03] 2026-01-15 23:02:57,678 | INFO     | executing command: cat /etc/os-release
[2026-01-15 17:04:03] 2026-01-15 23:02:57,689 | INFO     | cat /etc/os-release:
[2026-01-15 17:04:03] NAME="CentOS Linux"
[2026-01-15 17:04:03] VERSION="7 (Core)"
[2026-01-15 17:04:03] ID="centos"
[2026-01-15 17:04:03] ID_LIKE="rhel fedora"
[2026-01-15 17:04:03] VERSION_ID="7"
[2026-01-15 17:04:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 17:04:03] ANSI_COLOR="0;31"
[2026-01-15 17:04:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 17:04:03] HOME_URL="https://www.centos.org/"
[2026-01-15 17:04:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 17:04:03] 
[2026-01-15 17:04:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 17:04:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 17:04:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 17:04:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 17:04:03] 
[2026-01-15 17:04:03] 2026-01-15 23:02:57,689 | INFO     | ***************************************
[2026-01-15 17:04:03] 2026-01-15 23:02:58,192 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/7
[2026-01-15 17:04:03] 2026-01-15 23:02:58,204 | INFO     | sufficient remaining disk space (1820126609408 B)
[2026-01-15 17:04:03] 2026-01-15 23:02:58,205 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 17:04:03] 2026-01-15 23:02:58,205 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 17:04:03] 2026-01-15 23:02:58,205 | INFO     | update_server=False
[2026-01-15 17:04:03] 2026-01-15 23:02:58,205 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 17:04:03] 2026-01-15 23:02:58,205 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 17:04:03] 2026-01-15 23:02:58,205 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 17:04:03] 2026-01-15 23:02:58,350 | INFO     | all data control threads have been joined
[2026-01-15 17:04:03] 2026-01-15 23:02:58,423 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 17:04:03] 2026-01-15 23:02:58,423 | INFO     | aborting loop
[2026-01-15 17:04:03] 2026-01-15 23:02:58,793 | INFO     | all job control threads have been joined
[2026-01-15 17:04:03] 2026-01-15 23:02:59,164 | INFO     | all payload control threads have been joined
[2026-01-15 17:04:03] 2026-01-15 23:02:59,210 | INFO     | [job] retrieve thread has finished
[2026-01-15 17:04:03] 2026-01-15 23:02:59,210 | INFO     | [job] queue monitor thread has finished
[2026-01-15 17:04:03] 2026-01-15 23:02:59,252 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 17:04:03] 2026-01-15 23:02:59,355 | INFO     | [data] control thread has finished
[2026-01-15 17:04:03] 2026-01-15 23:02:59,414 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 17:04:03] 2026-01-15 23:02:59,428 | INFO     | [job] job monitor thread has finished
[2026-01-15 17:04:03] 2026-01-15 23:02:59,739 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 17:04:03] 2026-01-15 23:02:59,799 | INFO     | [job] control thread has finished
[2026-01-15 17:04:03] 2026-01-15 23:02:59,830 | INFO     | [data] copytool_in thread has finished
[2026-01-15 17:04:03] 2026-01-15 23:03:00,170 | INFO     | [payload] control thread has finished
[2026-01-15 17:04:03] 2026-01-15 23:03:00,211 | INFO     | [data] copytool_out thread has finished
[2026-01-15 17:04:03] 2026-01-15 23:03:00,490 | INFO     | [payload] validate_post thread has finished
[2026-01-15 17:04:03] 2026-01-15 23:03:00,617 | INFO     | [job] validate thread has finished
[2026-01-15 17:04:03] 2026-01-15 23:03:00,703 | INFO     | [payload] failed_post thread has finished
[2026-01-15 17:04:03] 2026-01-15 23:03:01,146 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 17:04:03] 2026-01-15 23:03:05,153 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 17:04:03] 2026-01-15 23:03:08,577 | INFO     | job.realtimelogging is not enabled
[2026-01-15 17:04:03] 2026-01-15 23:03:09,583 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 17:04:03] 2026-01-15 23:03:29,303 | INFO     | PID=1066498 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 17:04:03] 2026-01-15 23:03:29,304 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 17:04:03] 2026-01-15 23:03:29,304 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 17:04:03] 2026-01-15 23:03:29,304 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 17:04:03] 2026-01-15 23:03:56,368 | INFO     | [monitor] cgroup control has ended
[2026-01-15 17:04:03] 2026-01-15 23:03:58,333 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 127645039654720)>', '<ExcThread(monitor, started 127644389590784)>']
[2026-01-15 17:04:03] 2026-01-15 23:03:58,458 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 17:04:03] 2026-01-15 23:03:58,459 | INFO     | [monitor] control thread has ended
[2026-01-15 17:04:03] 2026-01-15 23:04:03,359 | INFO     | all workflow threads have been joined
[2026-01-15 17:04:03] 2026-01-15 23:04:03,359 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 17:04:03] 2026-01-15 23:04:03,359 | INFO     | traces error code: 0
[2026-01-15 17:04:03] 2026-01-15 23:04:03,359 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 17:04:03] 2026-01-15 23:04:03,426 [wrapper] ==== pilot stdout END ====
[2026-01-15 17:04:03] 2026-01-15 23:04:03,428 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 17:04:03] 2026-01-15 23:04:03,431 [wrapper] pilotpid: 1066498
[2026-01-15 17:04:03] 2026-01-15 23:04:03,433 [wrapper] Pilot exit status: 0
[2026-01-15 17:04:03] 2026-01-15 23:04:03,439 [wrapper] pandaids: 6970539250
[2026-01-15 17:04:03] 2026-01-15 23:04:03,470 [wrapper] cleanup supervisor_pilot 1127250 1066499
[2026-01-15 17:04:03] 2026-01-15 23:04:03,473 [wrapper] Test setup, not cleaning
[2026-01-15 17:04:03] 2026-01-15 23:04:03,475 [wrapper] apfmon messages muted
[2026-01-15 17:04:03] 2026-01-15 23:04:03,477 [wrapper] ==== wrapper stdout END ====
[2026-01-15 17:04:03] 2026-01-15 23:04:03,479 [wrapper] ==== wrapper stderr END ====
[2026-01-15 17:04:03]  *** Error codes and diagnostics ***
[2026-01-15 17:04:03]     "exeErrorCode": 0,
[2026-01-15 17:04:03]     "exeErrorDiag": "",
[2026-01-15 17:04:03]     "pilotErrorCode": 0,
[2026-01-15 17:04:03]     "pilotErrorDiag": "",
[2026-01-15 17:04:03]  *** Listing of results directory ***
[2026-01-15 17:04:03] total 741824
[2026-01-15 17:04:03] -rw-r--r-- 1 boinc boinc    579449 Jan 15 02:34 pilot3.tar.gz
[2026-01-15 17:04:03] -rwx------ 1 boinc boinc     36322 Jan 15 02:36 runpilot2-wrapper.sh
[2026-01-15 17:04:03] -rw-r--r-- 1 boinc boinc      5112 Jan 15 02:38 queuedata.json
[2026-01-15 17:04:03] -rw-r--r-- 1 boinc boinc       100 Jan 15 16:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 17:04:03] -rwxr-xr-x 1 boinc boinc      7986 Jan 15 16:10 run_atlas
[2026-01-15 17:04:03] -rw-r--r-- 1 boinc boinc       105 Jan 15 16:10 job.xml
[2026-01-15 17:04:03] -rw-r--r-- 1 boinc boinc      9664 Jan 15 16:10 init_data.xml
[2026-01-15 17:04:03] -rw-r--r-- 2 boinc boinc 599483505 Jan 15 16:10 EVNT.32794306._001976.pool.root.1
[2026-01-15 17:04:03] -rw-r--r-- 2 boinc boinc     15847 Jan 15 16:10 start_atlas.sh
[2026-01-15 17:04:03] drwxrwx--x 2 boinc boinc      4096 Jan 15 16:10 shared
[2026-01-15 17:04:03] -rw-r--r-- 2 boinc boinc    592406 Jan 15 16:10 input.tar.gz
[2026-01-15 17:04:03] -rw-r--r-- 1 boinc boinc         0 Jan 15 16:10 boinc_lockfile
[2026-01-15 17:04:03] -rw-r--r-- 1 boinc boinc      2509 Jan 15 16:10 pandaJob.out
[2026-01-15 17:04:03] -rw------- 1 boinc boinc   1004083 Jan 15 16:10 agis_schedconf.cvmfs.json
[2026-01-15 17:04:03] -rw------- 1 boinc boinc   1516246 Jan 15 16:10 agis_ddmendpoints.agis.ALL.json
[2026-01-15 17:04:03] drwx------ 5 boinc boinc      4096 Jan 15 16:10 pilot3
[2026-01-15 17:04:03] -rw------- 1 boinc boinc 154754444 Jan 15 17:02 HITS.48215263._050860.pool.root.1
[2026-01-15 17:04:03] -rw------- 1 boinc boinc      1021 Jan 15 17:02 memory_monitor_summary.json
[2026-01-15 17:04:03] -rw------- 1 boinc boinc    238590 Jan 15 17:02 log.48215263._050860.job.log.tgz.1
[2026-01-15 17:04:03] -rw-r--r-- 1 boinc boinc       530 Jan 15 17:02 boinc_task_state.xml
[2026-01-15 17:04:03] -rw------- 1 boinc boinc      7748 Jan 15 17:02 heartbeat.json
[2026-01-15 17:04:03] -rw------- 1 boinc boinc        95 Jan 15 17:03 pilot_heartbeat.json
[2026-01-15 17:04:03] -rw-r--r-- 1 boinc boinc      8192 Jan 15 17:03 boinc_mmap_file
[2026-01-15 17:04:03] -rw-r--r-- 1 boinc boinc        27 Jan 15 17:03 wrapper_checkpoint.txt
[2026-01-15 17:04:03] -rw------- 1 boinc boinc      4829 Jan 15 17:04 pilotlog.txt
[2026-01-15 17:04:03] -rw------- 1 boinc boinc    485575 Jan 15 17:04 log.48215263._050860.job.log.1
[2026-01-15 17:04:03] -rw------- 1 boinc boinc       357 Jan 15 17:04 output.list
[2026-01-15 17:04:03] -rw-r--r-- 1 boinc boinc       620 Jan 15 17:04 runtime_log
[2026-01-15 17:04:03] -rw------- 1 boinc boinc    747520 Jan 15 17:04 result.tar.gz
[2026-01-15 17:04:03] -rw-r--r-- 1 boinc boinc      8933 Jan 15 17:04 runtime_log.err
[2026-01-15 17:04:03] -rw------- 1 boinc boinc       650 Jan 15 17:04 HwOMDmA1X08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmsjuKDmeNk4Hn.diag
[2026-01-15 17:04:03] -rw-r--r-- 1 boinc boinc     21432 Jan 15 17:04 stderr.txt
[2026-01-15 17:04:03] HITS file was successfully produced:
[2026-01-15 17:04:03] -rw------- 1 boinc boinc 154754444 Jan 15 17:02 shared/HITS.pool.root.1
[2026-01-15 17:04:03]  *** Contents of shared directory: ***
[2026-01-15 17:04:03] total 737900
[2026-01-15 17:04:03] -rw-r--r-- 2 boinc boinc 599483505 Jan 15 16:10 ATLAS.root_0
[2026-01-15 17:04:03] -rw-r--r-- 2 boinc boinc     15847 Jan 15 16:10 start_atlas.sh
[2026-01-15 17:04:03] -rw-r--r-- 2 boinc boinc    592406 Jan 15 16:10 input.tar.gz
[2026-01-15 17:04:03] -rw------- 1 boinc boinc 154754444 Jan 15 17:02 HITS.pool.root.1
[2026-01-15 17:04:03] -rw------- 1 boinc boinc    747520 Jan 15 17:04 result.tar.gz
17:04:05 (1062599): run_atlas exited; CPU time 11669.319230
17:04:05 (1062599): called boinc_finish(0)

</stderr_txt>
]]>

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