Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:31:11 (989808): wrapper (7.7.26015): starting
11:31:11 (989808): wrapper: running run_atlas (--nthreads 10)
[2026-01-15 11:31:11] Arguments: --nthreads 10
[2026-01-15 11:31:11] Threads: 10
[2026-01-15 11:31:11] Checking for CVMFS
[2026-01-15 11:31:11] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 11:31:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 11:31:11] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 11:31:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 11:31:12] 2.13.3.0 7385 102229 180572 155179 3 475 22921442 32503808 28372 16776704 0 1198063354 99.605 1254689434 49203 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-15 11:31:12] CVMFS is ok
[2026-01-15 11:31:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 11:31:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 11:31:12] Further information can be found at the LHC@home message board.
[2026-01-15 11:31:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 11:31:12] Checking for apptainer binary...
[2026-01-15 11:31:12] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 11:31:12] Running /usr/bin/apptainer --version
[2026-01-15 11:31:12] apptainer version 1.4.5-2.el9
[2026-01-15 11:31:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 11:31:13] c8-7-1.aglt2.org
[2026-01-15 11:31:13] apptainer works
[2026-01-15 11:31:13] Set ATHENA_PROC_NUMBER=10
[2026-01-15 11:31:13] Set ATHENA_CORE_NUMBER=10
[2026-01-15 11:31:13] Starting ATLAS job with PandaID=6969523706
[2026-01-15 11:31:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 12:24:14]  *** The last 200 lines of the pilot log: ***
[2026-01-15 12:24:14]  scope=mc23_13p6TeV
[2026-01-15 12:24:14]  status=None
[2026-01-15 12:24:14]  status_code=0
[2026-01-15 12:24:14]  storage_token=
[2026-01-15 12:24:14]  surl=/tmp/boinchome/slots/4/PanDA_Pilot-6969523706/log.48215263._028051.job.log.tgz.1
[2026-01-15 12:24:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f8/36/log.48215263._028051.job.log.tgz.1
[2026-01-15 12:24:14]  workdir=None
[2026-01-15 12:24:14] ]
[2026-01-15 12:24:14] 2026-01-15 17:23:29,802 | INFO     | transferring file log.48215263._028051.job.log.tgz.1 from /tmp/boinchome/slots/4/PanDA_Pilot-6969523706/log.48215263._028051.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-15 12:24:14] 2026-01-15 17:23:29,803 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/4/PanDA_Pilot-6969523706/log.48215263._028051.job.log.tgz.1 /tmp/boinchome/slots/4/log.48215263._028051.job
[2026-01-15 12:24:14] 2026-01-15 17:23:29,817 | INFO     | adding to output.list: log.48215263._028051.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f8/36/log.48215263._028051.job.log.tg
[2026-01-15 12:24:14] 2026-01-15 17:23:29,818 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-15 12:24:14] 2026-01-15 17:23:29,818 | INFO     | summary of transferred files:
[2026-01-15 12:24:14] 2026-01-15 17:23:29,818 | INFO     |  -- lfn=log.48215263._028051.job.log.tgz.1, status_code=0, status=transferred
[2026-01-15 12:24:14] 2026-01-15 17:23:29,818 | INFO     | stage-out finished correctly
[2026-01-15 12:24:14] 2026-01-15 17:23:30,409 | INFO     | time since job start (3088s) is within the limit (349056.0s)
[2026-01-15 12:24:14] 2026-01-15 17:23:31,471 | INFO     | monitor loop #224: job 0:6969523706 is in state 'finished'
[2026-01-15 12:24:14] 2026-01-15 17:23:31,471 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:24:14] 2026-01-15 17:23:32,414 | INFO     | time since job start (3090s) is within the limit (349056.0s)
[2026-01-15 12:24:14] 2026-01-15 17:23:32,471 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-15 12:24:14] 2026-01-15 17:23:32,519 | INFO     | job 6969523706 has state=finished
[2026-01-15 12:24:14] 2026-01-15 17:23:32,519 | INFO     | preparing for final server update for job 6969523706 in state='finished'
[2026-01-15 12:24:14] 2026-01-15 17:23:32,519 | INFO     | this job has now completed (state=finished)
[2026-01-15 12:24:14] 2026-01-15 17:23:32,519 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-15 12:24:14] 2026-01-15 17:23:32,519 | INFO     | log transfer has been attempted: DONE
[2026-01-15 12:24:14] 2026-01-15 17:23:32,519 | INFO     | job 6969523706 has finished - writing final server update
[2026-01-15 12:24:14] 2026-01-15 17:23:32,520 | INFO     | total number of processed events: 400 (read)
[2026-01-15 12:24:14] 2026-01-15 17:23:32,520 | INFO     | executing command: lscpu
[2026-01-15 12:24:14] 2026-01-15 17:23:32,592 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-15 12:24:14] 2026-01-15 17:23:33,975 | INFO     | monitor loop #225: job 0:6969523706 is in state 'finished'
[2026-01-15 12:24:14] 2026-01-15 17:23:33,975 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:24:14] 2026-01-15 17:23:34,419 | INFO     | time since job start (3092s) is within the limit (349056.0s)
[2026-01-15 12:24:14] 2026-01-15 17:23:36,425 | INFO     | time since job start (3094s) is within the limit (349056.0s)
[2026-01-15 12:24:14] 2026-01-15 17:23:36,478 | INFO     | monitor loop #226: job 0:6969523706 is in state 'finished'
[2026-01-15 12:24:14] 2026-01-15 17:23:36,478 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:24:14] 2026-01-15 17:23:37,207 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-15 12:24:14] 2026-01-15 17:23:37,212 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3416.5487890625
[2026-01-15 12:24:14] 2026-01-15 17:23:37,225 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6969523706/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 12:24:14] 2026-01-15 17:23:37,226 | INFO     | extracted standard info from prmon json
[2026-01-15 12:24:14] 2026-01-15 17:23:37,226 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 12:24:14] 2026-01-15 17:23:37,226 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 12:24:14] 2026-01-15 17:23:37,226 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 12:24:14] 2026-01-15 17:23:37,226 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 12:24:14] 2026-01-15 17:23:37,227 | INFO     | fitting pss+swap vs Time
[2026-01-15 12:24:14] 2026-01-15 17:23:37,227 | INFO     | sum of square deviations: 22959882.47619046
[2026-01-15 12:24:14] 2026-01-15 17:23:37,227 | INFO     | sum of deviations: 2745843628.7619047
[2026-01-15 12:24:14] 2026-01-15 17:23:37,227 | INFO     | mean x: 1768496383.5238094
[2026-01-15 12:24:14] 2026-01-15 17:23:37,227 | INFO     | mean y: 2843456.238095238
[2026-01-15 12:24:14] 2026-01-15 17:23:37,227 | INFO     | intersect: -211497129691.40494
[2026-01-15 12:24:14] 2026-01-15 17:23:37,227 | INFO     | chi2: 0.058747244394027495
[2026-01-15 12:24:14] 2026-01-15 17:23:37,228 | INFO     | current memory leak: 119.59 B/s (using 42 data points, chi2=0.06)
[2026-01-15 12:24:14] 2026-01-15 17:23:37,228 | INFO     | could have reported an average CPU frequency of 3537 MHz (5 samples)
[2026-01-15 12:24:14] 2026-01-15 17:23:37,228 | INFO     | ..............................
[2026-01-15 12:24:14] 2026-01-15 17:23:37,228 | INFO     | . Timing measurements:
[2026-01-15 12:24:14] 2026-01-15 17:23:37,228 | INFO     | . get job = 0 s
[2026-01-15 12:24:14] 2026-01-15 17:23:37,228 | INFO     | . initial setup = 4 s
[2026-01-15 12:24:14] 2026-01-15 17:23:37,228 | INFO     | . payload setup = 26 s
[2026-01-15 12:24:14] 2026-01-15 17:23:37,228 | INFO     | . stage-in = 0 s
[2026-01-15 12:24:14] 2026-01-15 17:23:37,228 | INFO     | . payload execution = 3001 s
[2026-01-15 12:24:14] 2026-01-15 17:23:37,228 | INFO     | . stage-out = 0 s
[2026-01-15 12:24:14] 2026-01-15 17:23:37,228 | INFO     | . log creation = 0 s
[2026-01-15 12:24:14] 2026-01-15 17:23:37,228 | INFO     | ..............................
[2026-01-15 12:24:14] 2026-01-15 17:23:37,283 | INFO     | 
[2026-01-15 12:24:14] 2026-01-15 17:23:37,283 | INFO     | job summary report
[2026-01-15 12:24:14] 2026-01-15 17:23:37,283 | INFO     | --------------------------------------------------
[2026-01-15 12:24:14] 2026-01-15 17:23:37,283 | INFO     | PanDA job id: 6969523706
[2026-01-15 12:24:14] 2026-01-15 17:23:37,283 | INFO     | task id: 48215263
[2026-01-15 12:24:14] 2026-01-15 17:23:37,283 | INFO     | errors: (none)
[2026-01-15 12:24:14] 2026-01-15 17:23:37,284 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-15 12:24:14] 2026-01-15 17:23:37,284 | INFO     | pilot state: finished 
[2026-01-15 12:24:14] 2026-01-15 17:23:37,284 | INFO     | transexitcode: 0
[2026-01-15 12:24:14] 2026-01-15 17:23:37,284 | INFO     | exeerrorcode: 0
[2026-01-15 12:24:14] 2026-01-15 17:23:37,284 | INFO     | exeerrordiag: 
[2026-01-15 12:24:14] 2026-01-15 17:23:37,284 | INFO     | exitcode: 0
[2026-01-15 12:24:14] 2026-01-15 17:23:37,284 | INFO     | exitmsg: OK
[2026-01-15 12:24:14] 2026-01-15 17:23:37,284 | INFO     | cpuconsumptiontime: 18115 s
[2026-01-15 12:24:14] 2026-01-15 17:23:37,284 | INFO     | nevents: 400
[2026-01-15 12:24:14] 2026-01-15 17:23:37,284 | INFO     | neventsw: 0
[2026-01-15 12:24:14] 2026-01-15 17:23:37,284 | INFO     | pid: 1032793
[2026-01-15 12:24:14] 2026-01-15 17:23:37,284 | INFO     | pgrp: 1032793
[2026-01-15 12:24:14] 2026-01-15 17:23:37,284 | INFO     | corecount: 10
[2026-01-15 12:24:14] 2026-01-15 17:23:37,284 | INFO     | event service: False
[2026-01-15 12:24:14] 2026-01-15 17:23:37,284 | INFO     | sizes: {0: 2283780, 1: 2283979, 11: 2283979, 22: 2284007, 24: 2284297, 33: 2284325, 3031: 2309889, 3032: 2318887, 3035: 2318943, 3039: 2319169}
[2026-01-15 12:24:14] 2026-01-15 17:23:37,284 | INFO     | --------------------------------------------------
[2026-01-15 12:24:14] 2026-01-15 17:23:37,284 | INFO     | 
[2026-01-15 12:24:14] 2026-01-15 17:23:37,284 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2026-01-15 12:24:14] 2026-01-15 17:23:37,302 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 12:24:14] 2026-01-15 17:23:37,303 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 12:24:14] 2026-01-15 17:23:37,303 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 12:24:14] 2026-01-15 17:23:37,303 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 12:24:14] 2026-01-15 17:23:37,303 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 12:24:14] 2026-01-15 17:23:37,303 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 12:24:14] 2026-01-15 17:23:37,303 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 12:24:14] 2026-01-15 17:23:37,303 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 12:24:14] 2026-01-15 17:23:37,303 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 12:24:14] 2026-01-15 17:23:37,303 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 12:24:14] 2026-01-15 17:23:37,303 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 12:24:14] 2026-01-15 17:23:37,303 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 12:24:14] 2026-01-15 17:23:37,303 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 12:24:14] 2026-01-15 17:23:37,303 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 12:24:14] 2026-01-15 17:23:37,303 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 12:24:14] 2026-01-15 17:23:37,303 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 12:24:14] 2026-01-15 17:23:37,303 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 12:24:14] 2026-01-15 17:23:37,303 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 12:24:14] 2026-01-15 17:23:37,303 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 12:24:14] 2026-01-15 17:23:37,303 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 12:24:14] 2026-01-15 17:23:37,304 | INFO     | job 6969523706 has completed (purged errors)
[2026-01-15 12:24:14] 2026-01-15 17:23:37,304 | INFO     | overall cleanup function is called
[2026-01-15 12:24:14] 2026-01-15 17:23:37,968 | INFO     | PID=1003192 has CPU usage=9.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 12:24:14] 2026-01-15 17:23:37,969 | INFO     | .. there are 23 such processes running
[2026-01-15 12:24:14] 2026-01-15 17:23:38,312 | INFO     | --- collectZombieJob: --- 10, [1032793]
[2026-01-15 12:24:14] 2026-01-15 17:23:38,312 | INFO     | zombie collector waiting for pid 1032793
[2026-01-15 12:24:14] 2026-01-15 17:23:38,312 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 12:24:14] 2026-01-15 17:23:38,312 | INFO     | collected zombie processes
[2026-01-15 12:24:14] 2026-01-15 17:23:38,312 | INFO     | will attempt to kill all subprocesses of pid=1032793
[2026-01-15 12:24:14] 2026-01-15 17:23:38,741 | INFO     | process IDs to be killed: [1032793] (in reverse order)
[2026-01-15 12:24:14] 2026-01-15 17:23:38,895 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 12:24:14] 2026-01-15 17:23:38,895 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 12:24:14] 2026-01-15 17:23:38,919 | INFO     | did not find any defunct processes belonging to 1032793
[2026-01-15 12:24:14] 2026-01-15 17:23:38,941 | INFO     | did not find any defunct processes belonging to 1032793
[2026-01-15 12:24:14] 2026-01-15 17:23:38,941 | INFO     | ready for new job
[2026-01-15 12:24:14] 2026-01-15 17:23:38,941 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 12:24:14] 2026-01-15 17:23:38,942 | INFO     | ***************************************
[2026-01-15 12:24:14] 2026-01-15 17:23:38,942 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 12:24:14] 2026-01-15 17:23:38,942 | INFO     | ***************************************
[2026-01-15 12:24:14] 2026-01-15 17:23:38,942 | INFO     | 
[2026-01-15 12:24:14] 2026-01-15 17:23:38,947 | INFO     | architecture information:
[2026-01-15 12:24:14] 2026-01-15 17:23:38,947 | INFO     | executing command: cat /etc/os-release
[2026-01-15 12:24:14] 2026-01-15 17:23:38,962 | INFO     | cat /etc/os-release:
[2026-01-15 12:24:14] NAME="CentOS Linux"
[2026-01-15 12:24:14] VERSION="7 (Core)"
[2026-01-15 12:24:14] ID="centos"
[2026-01-15 12:24:14] ID_LIKE="rhel fedora"
[2026-01-15 12:24:14] VERSION_ID="7"
[2026-01-15 12:24:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 12:24:14] ANSI_COLOR="0;31"
[2026-01-15 12:24:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 12:24:14] HOME_URL="https://www.centos.org/"
[2026-01-15 12:24:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 12:24:14] 
[2026-01-15 12:24:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 12:24:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 12:24:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 12:24:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 12:24:14] 
[2026-01-15 12:24:14] 2026-01-15 17:23:38,963 | INFO     | ***************************************
[2026-01-15 12:24:14] 2026-01-15 17:23:39,465 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2026-01-15 12:24:14] 2026-01-15 17:23:39,480 | INFO     | sufficient remaining disk space (95000985600 B)
[2026-01-15 12:24:14] 2026-01-15 17:23:39,481 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 12:24:14] 2026-01-15 17:23:39,481 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 12:24:14] 2026-01-15 17:23:39,481 | INFO     | update_server=False
[2026-01-15 12:24:14] 2026-01-15 17:23:39,481 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 12:24:14] 2026-01-15 17:23:39,481 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 12:24:14] 2026-01-15 17:23:39,844 | INFO     | all data control threads have been joined
[2026-01-15 12:24:14] 2026-01-15 17:23:39,865 | INFO     | all payload control threads have been joined
[2026-01-15 12:24:14] 2026-01-15 17:23:39,986 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 12:24:14] 2026-01-15 17:23:39,987 | INFO     | aborting loop
[2026-01-15 12:24:14] 2026-01-15 17:23:40,050 | INFO     | all job control threads have been joined
[2026-01-15 12:24:14] 2026-01-15 17:23:40,386 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 12:24:14] 2026-01-15 17:23:40,486 | INFO     | [job] retrieve thread has finished
[2026-01-15 12:24:14] 2026-01-15 17:23:40,611 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 12:24:14] 2026-01-15 17:23:40,850 | INFO     | [data] control thread has finished
[2026-01-15 12:24:14] 2026-01-15 17:23:40,870 | INFO     | [payload] control thread has finished
[2026-01-15 12:24:14] 2026-01-15 17:23:40,881 | INFO     | [job] validate thread has finished
[2026-01-15 12:24:14] 2026-01-15 17:23:40,895 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 12:24:14] 2026-01-15 17:23:40,922 | INFO     | [payload] failed_post thread has finished
[2026-01-15 12:24:14] 2026-01-15 17:23:40,994 | INFO     | [job] job monitor thread has finished
[2026-01-15 12:24:14] 2026-01-15 17:23:41,056 | INFO     | [job] control thread has finished
[2026-01-15 12:24:14] 2026-01-15 17:23:41,520 | INFO     | [payload] validate_post thread has finished
[2026-01-15 12:24:14] 2026-01-15 17:23:41,789 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 12:24:14] 2026-01-15 17:23:41,813 | INFO     | [data] copytool_in thread has finished
[2026-01-15 12:24:14] 2026-01-15 17:23:42,293 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 12:24:14] 2026-01-15 17:23:42,391 | INFO     | [data] copytool_out thread has finished
[2026-01-15 12:24:14] 2026-01-15 17:23:43,298 | INFO     | [job] queue monitor thread has finished
[2026-01-15 12:24:14] 2026-01-15 17:23:43,487 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 12:24:14] 2026-01-15 17:23:49,552 | INFO     | job.realtimelogging is not enabled
[2026-01-15 12:24:14] 2026-01-15 17:23:50,557 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 12:24:14] 2026-01-15 17:24:07,324 | INFO     | [monitor] cgroup control has ended
[2026-01-15 12:24:14] 2026-01-15 17:24:09,170 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140569760769856)>', '<ExcThread(monitor, started 140569414186752)>']
[2026-01-15 12:24:14] 2026-01-15 17:24:10,604 | INFO     | PID=1003192 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 12:24:14] 2026-01-15 17:24:10,604 | INFO     | .. there are 23 such processes running
[2026-01-15 12:24:14] 2026-01-15 17:24:10,605 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 12:24:14] 2026-01-15 17:24:10,605 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 12:24:14] 2026-01-15 17:24:10,605 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 12:24:14] 2026-01-15 17:24:10,605 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 12:24:14] 2026-01-15 17:24:10,605 | INFO     | [monitor] control thread has ended
[2026-01-15 12:24:14] 2026-01-15 17:24:14,195 | INFO     | all workflow threads have been joined
[2026-01-15 12:24:14] 2026-01-15 17:24:14,195 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 12:24:14] 2026-01-15 17:24:14,195 | INFO     | traces error code: 0
[2026-01-15 12:24:14] 2026-01-15 17:24:14,196 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 12:24:14] 2026-01-15 17:24:14,364 [wrapper] ==== pilot stdout END ====
[2026-01-15 12:24:14] 2026-01-15 17:24:14,368 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 12:24:14] 2026-01-15 17:24:14,370 [wrapper] pilotpid: 1003192
[2026-01-15 12:24:14] 2026-01-15 17:24:14,373 [wrapper] Pilot exit status: 0
[2026-01-15 12:24:14] 2026-01-15 17:24:14,389 [wrapper] pandaids: 6969523706
[2026-01-15 12:24:14] 2026-01-15 17:24:14,477 [wrapper] cleanup supervisor_pilot 1250385 1003193
[2026-01-15 12:24:14] 2026-01-15 17:24:14,480 [wrapper] Test setup, not cleaning
[2026-01-15 12:24:14] 2026-01-15 17:24:14,482 [wrapper] apfmon messages muted
[2026-01-15 12:24:14] 2026-01-15 17:24:14,485 [wrapper] ==== wrapper stdout END ====
[2026-01-15 12:24:14] 2026-01-15 17:24:14,490 [wrapper] ==== wrapper stderr END ====
[2026-01-15 12:24:14]  *** Error codes and diagnostics ***
[2026-01-15 12:24:14]     "exeErrorCode": 0,
[2026-01-15 12:24:14]     "exeErrorDiag": "",
[2026-01-15 12:24:14]     "pilotErrorCode": 0,
[2026-01-15 12:24:14]     "pilotErrorDiag": "",
[2026-01-15 12:24:14]  *** Listing of results directory ***
[2026-01-15 12:24:14] total 742720
[2026-01-15 12:24:14] -rw-r--r--. 1 boincer umatlas    579449 Jan 14 11:41 pilot3.tar.gz
[2026-01-15 12:24:14] -rwx------. 1 boincer umatlas     36322 Jan 14 11:44 runpilot2-wrapper.sh
[2026-01-15 12:24:14] -rw-r--r--. 1 boincer umatlas      5112 Jan 14 11:44 queuedata.json
[2026-01-15 12:24:14] -rw-r--r--. 1 boincer umatlas       100 Jan 15 11:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 12:24:14] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 15 11:31 run_atlas
[2026-01-15 12:24:14] -rw-r--r--. 1 boincer umatlas       105 Jan 15 11:31 job.xml
[2026-01-15 12:24:14] -rw-r--r--. 2 boincer umatlas 598512632 Jan 15 11:31 EVNT.32794306._001123.pool.root.1
[2026-01-15 12:24:14] drwxrwx--x. 2 boincer umatlas      4096 Jan 15 11:31 shared
[2026-01-15 12:24:14] -rw-r--r--. 2 boincer umatlas    592398 Jan 15 11:31 input.tar.gz
[2026-01-15 12:24:14] -rw-r--r--. 2 boincer umatlas     15847 Jan 15 11:31 start_atlas.sh
[2026-01-15 12:24:14] -rw-r--r--. 1 boincer umatlas         0 Jan 15 11:31 boinc_lockfile
[2026-01-15 12:24:14] -rw-r--r--. 1 boincer umatlas      2508 Jan 15 11:31 pandaJob.out
[2026-01-15 12:24:14] -rw-------. 1 boincer umatlas        57 Jan 15 11:31 setup.sh.local
[2026-01-15 12:24:14] -rw-------. 1 boincer umatlas   1004091 Jan 15 11:31 agis_schedconf.cvmfs.json
[2026-01-15 12:24:14] -rw-------. 1 boincer umatlas   1516246 Jan 15 11:31 agis_ddmendpoints.agis.ALL.json
[2026-01-15 12:24:14] drwx------. 5 boincer umatlas      4096 Jan 15 11:32 pilot3
[2026-01-15 12:24:14] -rw-r--r--. 1 boincer umatlas      7171 Jan 15 12:20 init_data.xml
[2026-01-15 12:24:14] -rw-------. 1 boincer umatlas 156514706 Jan 15 12:23 HITS.48215263._028051.pool.root.1
[2026-01-15 12:24:14] -rw-r--r--. 1 boincer umatlas       530 Jan 15 12:23 boinc_task_state.xml
[2026-01-15 12:24:14] -rw-------. 1 boincer umatlas      1034 Jan 15 12:23 memory_monitor_summary.json
[2026-01-15 12:24:14] -rw-------. 1 boincer umatlas    329409 Jan 15 12:23 log.48215263._028051.job.log.tgz.1
[2026-01-15 12:24:14] -rw-------. 1 boincer umatlas      7778 Jan 15 12:23 heartbeat.json
[2026-01-15 12:24:14] -rw-------. 1 boincer umatlas        95 Jan 15 12:24 pilot_heartbeat.json
[2026-01-15 12:24:14] -rw-r--r--. 1 boincer umatlas      8192 Jan 15 12:24 boinc_mmap_file
[2026-01-15 12:24:14] -rw-r--r--. 1 boincer umatlas        27 Jan 15 12:24 wrapper_checkpoint.txt
[2026-01-15 12:24:14] -rw-------. 1 boincer umatlas      4896 Jan 15 12:24 pilotlog.txt
[2026-01-15 12:24:14] -rw-------. 1 boincer umatlas    462400 Jan 15 12:24 log.48215263._028051.job.log.1
[2026-01-15 12:24:14] -rw-------. 1 boincer umatlas       357 Jan 15 12:24 output.list
[2026-01-15 12:24:14] -rw-r--r--. 1 boincer umatlas       620 Jan 15 12:24 runtime_log
[2026-01-15 12:24:14] -rw-------. 1 boincer umatlas    808960 Jan 15 12:24 result.tar.gz
[2026-01-15 12:24:14] -rw-r--r--. 1 boincer umatlas      9334 Jan 15 12:24 runtime_log.err
[2026-01-15 12:24:14] -rw-------. 1 boincer umatlas       650 Jan 15 12:24 hoTLDm39I08n9Rq4apOajLDm4fhM0noT9bVo0NGKDm1llKDm7phIOn.diag
[2026-01-15 12:24:14] -rw-r--r--. 1 boincer umatlas     22107 Jan 15 12:24 stderr.txt
[2026-01-15 12:24:14] HITS file was successfully produced:
[2026-01-15 12:24:14] -rw-------. 1 boincer umatlas 156514706 Jan 15 12:23 shared/HITS.pool.root.1
[2026-01-15 12:24:14]  *** Contents of shared directory: ***
[2026-01-15 12:24:14] total 738732
[2026-01-15 12:24:14] -rw-r--r--. 2 boincer umatlas 598512632 Jan 15 11:31 ATLAS.root_0
[2026-01-15 12:24:14] -rw-r--r--. 2 boincer umatlas    592398 Jan 15 11:31 input.tar.gz
[2026-01-15 12:24:14] -rw-r--r--. 2 boincer umatlas     15847 Jan 15 11:31 start_atlas.sh
[2026-01-15 12:24:14] -rw-------. 1 boincer umatlas 156514706 Jan 15 12:23 HITS.pool.root.1
[2026-01-15 12:24:14] -rw-------. 1 boincer umatlas    808960 Jan 15 12:24 result.tar.gz
12:24:16 (989808): run_atlas exited; CPU time 18173.257701
12:24:16 (989808): called boinc_finish(0)

</stderr_txt>
]]>

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