Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:28:59 (596345): wrapper (7.7.26015): starting
11:28:59 (596345): wrapper: running run_atlas (--nthreads 10)
[2026-01-15 11:28:59] Arguments: --nthreads 10
[2026-01-15 11:28:59] Threads: 10
[2026-01-15 11:28:59] Checking for CVMFS
[2026-01-15 11:28:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 11:29:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 11:29:00] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 11:29:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 11:29:00] 2.13.3.0 12348 102292 396716 155179 0 353 25561865 32935936 28516 16776704 0 367350297 99.491 483892785 34618 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-15 11:29:00] CVMFS is ok
[2026-01-15 11:29:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 11:29:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 11:29:00] Further information can be found at the LHC@home message board.
[2026-01-15 11:29:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 11:29:00] Checking for apptainer binary...
[2026-01-15 11:29:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 11:29:00] Running /usr/bin/apptainer --version
[2026-01-15 11:29:00] apptainer version 1.4.5-2.el9
[2026-01-15 11:29:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 11:29:01] c6-12-27-2.aglt2.org
[2026-01-15 11:29:01] apptainer works
[2026-01-15 11:29:01] Set ATHENA_PROC_NUMBER=10
[2026-01-15 11:29:01] Set ATHENA_CORE_NUMBER=10
[2026-01-15 11:29:01] Starting ATLAS job with PandaID=6970459557
[2026-01-15 11:29:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 12:44:35]  *** The last 200 lines of the pilot log: ***
[2026-01-15 12:44:35] 2026-01-15 17:43:30,265 | INFO     | this job has now completed (state=finished)
[2026-01-15 12:44:35] 2026-01-15 17:43:30,265 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-15 12:44:35] 2026-01-15 17:43:30,265 | INFO     | log transfer has been attempted: DONE
[2026-01-15 12:44:35] 2026-01-15 17:43:30,265 | INFO     | job 6970459557 has finished - writing final server update
[2026-01-15 12:44:35] 2026-01-15 17:43:30,265 | INFO     | total number of processed events: 400 (read)
[2026-01-15 12:44:35] 2026-01-15 17:43:30,279 | INFO     | executing command: lscpu
[2026-01-15 12:44:35] 2026-01-15 17:43:30,419 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-15 12:44:35] 2026-01-15 17:43:31,500 | INFO     | time since job start (4449s) is within the limit (349056.0s)
[2026-01-15 12:44:35] 2026-01-15 17:43:31,738 | INFO     | monitor loop #295: job 0:6970459557 is in state 'finished'
[2026-01-15 12:44:35] 2026-01-15 17:43:31,738 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:44:35] 2026-01-15 17:43:33,509 | INFO     | time since job start (4451s) is within the limit (349056.0s)
[2026-01-15 12:44:35] 2026-01-15 17:43:34,243 | INFO     | monitor loop #296: job 0:6970459557 is in state 'finished'
[2026-01-15 12:44:35] 2026-01-15 17:43:34,243 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:44:35] 2026-01-15 17:43:35,520 | INFO     | time since job start (4453s) is within the limit (349056.0s)
[2026-01-15 12:44:35] 2026-01-15 17:43:36,749 | INFO     | monitor loop #297: job 0:6970459557 is in state 'finished'
[2026-01-15 12:44:35] 2026-01-15 17:43:36,749 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:44:35] 2026-01-15 17:43:37,527 | INFO     | time since job start (4455s) is within the limit (349056.0s)
[2026-01-15 12:44:35] 2026-01-15 17:43:39,254 | INFO     | monitor loop #298: job 0:6970459557 is in state 'finished'
[2026-01-15 12:44:35] 2026-01-15 17:43:39,254 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:44:35] 2026-01-15 17:43:39,550 | INFO     | time since job start (4457s) is within the limit (349056.0s)
[2026-01-15 12:44:35] 2026-01-15 17:43:41,556 | INFO     | time since job start (4459s) is within the limit (349056.0s)
[2026-01-15 12:44:35] 2026-01-15 17:43:41,759 | INFO     | monitor loop #299: job 0:6970459557 is in state 'finished'
[2026-01-15 12:44:35] 2026-01-15 17:43:41,759 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:44:35] 2026-01-15 17:43:43,683 | INFO     | PID=601289 has CPU usage=11.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 12:44:35] 2026-01-15 17:43:43,683 | INFO     | .. there are 24 such processes running
[2026-01-15 12:44:35] 2026-01-15 17:43:44,308 | INFO     | monitor loop #300: job 0:6970459557 is in state 'finished'
[2026-01-15 12:44:35] 2026-01-15 17:43:44,308 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:44:35] 2026-01-15 17:43:44,685 | INFO     | time since job start (4462s) is within the limit (349056.0s)
[2026-01-15 12:44:35] 2026-01-15 17:43:46,692 | INFO     | time since job start (4464s) is within the limit (349056.0s)
[2026-01-15 12:44:35] 2026-01-15 17:43:46,825 | INFO     | monitor loop #301: job 0:6970459557 is in state 'finished'
[2026-01-15 12:44:35] 2026-01-15 17:43:46,825 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:44:35] 2026-01-15 17:43:48,699 | INFO     | time since job start (4466s) is within the limit (349056.0s)
[2026-01-15 12:44:35] 2026-01-15 17:43:49,356 | INFO     | monitor loop #302: job 0:6970459557 is in state 'finished'
[2026-01-15 12:44:35] 2026-01-15 17:43:49,356 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:44:35] 2026-01-15 17:43:50,706 | INFO     | time since job start (4468s) is within the limit (349056.0s)
[2026-01-15 12:44:35] 2026-01-15 17:43:51,208 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-15 12:44:35] 2026-01-15 17:43:51,219 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2690.459802083333
[2026-01-15 12:44:35] 2026-01-15 17:43:51,253 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6970459557/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 12:44:35] 2026-01-15 17:43:51,254 | INFO     | extracted standard info from prmon json
[2026-01-15 12:44:35] 2026-01-15 17:43:51,254 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 12:44:35] 2026-01-15 17:43:51,254 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 12:44:35] 2026-01-15 17:43:51,255 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 12:44:35] 2026-01-15 17:43:51,255 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 12:44:35] 2026-01-15 17:43:51,257 | INFO     | fitting pss+swap vs Time
[2026-01-15 12:44:35] 2026-01-15 17:43:51,257 | INFO     | sum of square deviations: 89179821.4545454
[2026-01-15 12:44:35] 2026-01-15 17:43:51,257 | INFO     | sum of deviations: -6376913072.81818
[2026-01-15 12:44:35] 2026-01-15 17:43:51,257 | INFO     | mean x: 1768496891.090909
[2026-01-15 12:44:35] 2026-01-15 17:43:51,258 | INFO     | mean y: 2757118.803030303
[2026-01-15 12:44:35] 2026-01-15 17:43:51,258 | INFO     | intersect: 126461307495.96486
[2026-01-15 12:44:35] 2026-01-15 17:43:51,258 | INFO     | chi2: 0.04035860039024895
[2026-01-15 12:44:35] 2026-01-15 17:43:51,258 | INFO     | current memory leak: -71.51 B/s (using 66 data points, chi2=0.04)
[2026-01-15 12:44:35] 2026-01-15 17:43:51,258 | INFO     | could have reported an average CPU frequency of 2680 MHz (6 samples)
[2026-01-15 12:44:35] 2026-01-15 17:43:51,259 | INFO     | ..............................
[2026-01-15 12:44:35] 2026-01-15 17:43:51,259 | INFO     | . Timing measurements:
[2026-01-15 12:44:35] 2026-01-15 17:43:51,259 | INFO     | . get job = 0 s
[2026-01-15 12:44:35] 2026-01-15 17:43:51,259 | INFO     | . initial setup = 3 s
[2026-01-15 12:44:35] 2026-01-15 17:43:51,259 | INFO     | . payload setup = 11 s
[2026-01-15 12:44:35] 2026-01-15 17:43:51,259 | INFO     | . stage-in = 0 s
[2026-01-15 12:44:35] 2026-01-15 17:43:51,259 | INFO     | . payload execution = 4403 s
[2026-01-15 12:44:35] 2026-01-15 17:43:51,259 | INFO     | . stage-out = 1 s
[2026-01-15 12:44:35] 2026-01-15 17:43:51,259 | INFO     | . log creation = 0 s
[2026-01-15 12:44:35] 2026-01-15 17:43:51,259 | INFO     | ..............................
[2026-01-15 12:44:35] 2026-01-15 17:43:51,459 | INFO     | 
[2026-01-15 12:44:35] 2026-01-15 17:43:51,459 | INFO     | job summary report
[2026-01-15 12:44:35] 2026-01-15 17:43:51,459 | INFO     | --------------------------------------------------
[2026-01-15 12:44:35] 2026-01-15 17:43:51,459 | INFO     | PanDA job id: 6970459557
[2026-01-15 12:44:35] 2026-01-15 17:43:51,459 | INFO     | task id: 48215263
[2026-01-15 12:44:35] 2026-01-15 17:43:51,459 | INFO     | errors: (none)
[2026-01-15 12:44:35] 2026-01-15 17:43:51,459 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-15 12:44:35] 2026-01-15 17:43:51,459 | INFO     | pilot state: finished 
[2026-01-15 12:44:35] 2026-01-15 17:43:51,460 | INFO     | transexitcode: 0
[2026-01-15 12:44:35] 2026-01-15 17:43:51,460 | INFO     | exeerrorcode: 0
[2026-01-15 12:44:35] 2026-01-15 17:43:51,460 | INFO     | exeerrordiag: 
[2026-01-15 12:44:35] 2026-01-15 17:43:51,460 | INFO     | exitcode: 0
[2026-01-15 12:44:35] 2026-01-15 17:43:51,460 | INFO     | exitmsg: OK
[2026-01-15 12:44:35] 2026-01-15 17:43:51,460 | INFO     | cpuconsumptiontime: 27830 s
[2026-01-15 12:44:35] 2026-01-15 17:43:51,460 | INFO     | nevents: 400
[2026-01-15 12:44:35] 2026-01-15 17:43:51,460 | INFO     | neventsw: 0
[2026-01-15 12:44:35] 2026-01-15 17:43:51,460 | INFO     | pid: 608489
[2026-01-15 12:44:35] 2026-01-15 17:43:51,460 | INFO     | pgrp: 608489
[2026-01-15 12:44:35] 2026-01-15 17:43:51,460 | INFO     | corecount: 10
[2026-01-15 12:44:35] 2026-01-15 17:43:51,460 | INFO     | event service: False
[2026-01-15 12:44:35] 2026-01-15 17:43:51,460 | INFO     | sizes: {0: 2283781, 1: 2283980, 11: 2284242, 12: 2284270, 4418: 2310375, 4419: 2310374, 4421: 2319556, 4424: 2319612, 4448: 2319806}
[2026-01-15 12:44:35] 2026-01-15 17:43:51,460 | INFO     | --------------------------------------------------
[2026-01-15 12:44:35] 2026-01-15 17:43:51,460 | INFO     | 
[2026-01-15 12:44:35] 2026-01-15 17:43:51,461 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-15 12:44:35] 2026-01-15 17:43:51,648 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 12:44:35] 2026-01-15 17:43:51,648 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 12:44:35] 2026-01-15 17:43:51,648 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 12:44:35] 2026-01-15 17:43:51,649 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 12:44:35] 2026-01-15 17:43:51,649 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 12:44:35] 2026-01-15 17:43:51,649 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 12:44:35] 2026-01-15 17:43:51,649 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 12:44:35] 2026-01-15 17:43:51,649 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 12:44:35] 2026-01-15 17:43:51,649 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 12:44:35] 2026-01-15 17:43:51,649 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 12:44:35] 2026-01-15 17:43:51,649 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 12:44:35] 2026-01-15 17:43:51,649 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 12:44:35] 2026-01-15 17:43:51,649 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 12:44:35] 2026-01-15 17:43:51,649 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 12:44:35] 2026-01-15 17:43:51,650 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 12:44:35] 2026-01-15 17:43:51,650 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 12:44:35] 2026-01-15 17:43:51,650 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 12:44:35] 2026-01-15 17:43:51,650 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 12:44:35] 2026-01-15 17:43:51,650 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 12:44:35] 2026-01-15 17:43:51,650 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 12:44:35] 2026-01-15 17:43:51,650 | INFO     | job 6970459557 has completed (purged errors)
[2026-01-15 12:44:35] 2026-01-15 17:43:51,650 | INFO     | overall cleanup function is called
[2026-01-15 12:44:35] 2026-01-15 17:43:52,658 | INFO     | --- collectZombieJob: --- 10, [608489]
[2026-01-15 12:44:35] 2026-01-15 17:43:52,658 | INFO     | zombie collector waiting for pid 608489
[2026-01-15 12:44:35] 2026-01-15 17:43:52,658 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 12:44:35] 2026-01-15 17:43:52,659 | INFO     | collected zombie processes
[2026-01-15 12:44:35] 2026-01-15 17:43:52,659 | INFO     | will attempt to kill all subprocesses of pid=608489
[2026-01-15 12:44:35] 2026-01-15 17:43:53,162 | INFO     | process IDs to be killed: [608489] (in reverse order)
[2026-01-15 12:44:35] 2026-01-15 17:43:53,295 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 12:44:35] 2026-01-15 17:43:53,296 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 12:44:35] 2026-01-15 17:43:53,314 | INFO     | did not find any defunct processes belonging to 608489
[2026-01-15 12:44:35] 2026-01-15 17:43:53,332 | INFO     | did not find any defunct processes belonging to 608489
[2026-01-15 12:44:35] 2026-01-15 17:43:53,332 | INFO     | ready for new job
[2026-01-15 12:44:35] 2026-01-15 17:43:53,332 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 12:44:35] 2026-01-15 17:43:53,334 | INFO     | ***************************************
[2026-01-15 12:44:35] 2026-01-15 17:43:53,334 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 12:44:35] 2026-01-15 17:43:53,334 | INFO     | ***************************************
[2026-01-15 12:44:35] 2026-01-15 17:43:53,334 | INFO     | 
[2026-01-15 12:44:35] 2026-01-15 17:43:53,340 | INFO     | architecture information:
[2026-01-15 12:44:35] 2026-01-15 17:43:53,341 | INFO     | executing command: cat /etc/os-release
[2026-01-15 12:44:35] 2026-01-15 17:43:53,358 | INFO     | cat /etc/os-release:
[2026-01-15 12:44:35] NAME="CentOS Linux"
[2026-01-15 12:44:35] VERSION="7 (Core)"
[2026-01-15 12:44:35] ID="centos"
[2026-01-15 12:44:35] ID_LIKE="rhel fedora"
[2026-01-15 12:44:35] VERSION_ID="7"
[2026-01-15 12:44:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 12:44:35] ANSI_COLOR="0;31"
[2026-01-15 12:44:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 12:44:35] HOME_URL="https://www.centos.org/"
[2026-01-15 12:44:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 12:44:35] 
[2026-01-15 12:44:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 12:44:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 12:44:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 12:44:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 12:44:35] 
[2026-01-15 12:44:35] 2026-01-15 17:43:53,358 | INFO     | ***************************************
[2026-01-15 12:44:35] 2026-01-15 17:43:53,862 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-15 12:44:35] 2026-01-15 17:43:53,903 | INFO     | sufficient remaining disk space (91890909184 B)
[2026-01-15 12:44:35] 2026-01-15 17:43:53,905 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 12:44:35] 2026-01-15 17:43:53,905 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 12:44:35] 2026-01-15 17:43:53,905 | INFO     | update_server=False
[2026-01-15 12:44:35] 2026-01-15 17:43:53,905 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 12:44:35] 2026-01-15 17:43:54,121 | INFO     | all payload control threads have been joined
[2026-01-15 12:44:35] 2026-01-15 17:43:54,397 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-15 12:44:35] 2026-01-15 17:43:54,397 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-15 12:44:35] 2026-01-15 17:43:54,397 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 12:44:35] 2026-01-15 17:43:54,397 | INFO     | will abort loop
[2026-01-15 12:44:35] 2026-01-15 17:43:54,630 | INFO     | all data control threads have been joined
[2026-01-15 12:44:35] 2026-01-15 17:43:54,915 | INFO     | [job] retrieve thread has finished
[2026-01-15 12:44:35] 2026-01-15 17:43:55,004 | INFO     | [payload] validate_post thread has finished
[2026-01-15 12:44:35] 2026-01-15 17:43:55,091 | INFO     | [data] copytool_in thread has finished
[2026-01-15 12:44:35] 2026-01-15 17:43:55,096 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 12:44:35] 2026-01-15 17:43:55,097 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 12:44:35] 2026-01-15 17:43:55,126 | INFO     | [payload] control thread has finished
[2026-01-15 12:44:35] 2026-01-15 17:43:55,340 | INFO     | all job control threads have been joined
[2026-01-15 12:44:35] 2026-01-15 17:43:55,403 | INFO     | [job] job monitor thread has finished
[2026-01-15 12:44:35] 2026-01-15 17:43:55,459 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 12:44:35] 2026-01-15 17:43:55,636 | INFO     | [data] control thread has finished
[2026-01-15 12:44:35] 2026-01-15 17:43:55,814 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 12:44:35] 2026-01-15 17:43:55,840 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 12:44:35] 2026-01-15 17:43:55,948 | INFO     | [job] validate thread has finished
[2026-01-15 12:44:35] 2026-01-15 17:43:56,081 | INFO     | [payload] failed_post thread has finished
[2026-01-15 12:44:35] 2026-01-15 17:43:56,111 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 12:44:35] 2026-01-15 17:43:56,346 | INFO     | [job] control thread has finished
[2026-01-15 12:44:35] 2026-01-15 17:43:56,394 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 12:44:35] 2026-01-15 17:43:57,104 | INFO     | [data] copytool_out thread has finished
[2026-01-15 12:44:35] 2026-01-15 17:43:57,399 | INFO     | [job] queue monitor thread has finished
[2026-01-15 12:44:35] 2026-01-15 17:44:00,120 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 12:44:35] 2026-01-15 17:44:18,529 [wrapper] supervise_pilot (15 min periods counter: 6)
[2026-01-15 12:44:35] 2026-01-15 17:44:24,344 | INFO     | PID=601289 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-15 12:44:35] 2026-01-15 17:44:24,344 | INFO     | .. there are 24 such processes running
[2026-01-15 12:44:35] 2026-01-15 17:44:24,345 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 12:44:35] 2026-01-15 17:44:24,345 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 12:44:35] 2026-01-15 17:44:24,345 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 12:44:35] 2026-01-15 17:44:30,068 | INFO     | [monitor] cgroup control has ended
[2026-01-15 12:44:35] 2026-01-15 17:44:30,118 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140264013637440)>', '<ExcThread(monitor, started 140263297120000)>']
[2026-01-15 12:44:35] 2026-01-15 17:44:30,383 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 12:44:35] 2026-01-15 17:44:30,383 | INFO     | [monitor] control thread has ended
[2026-01-15 12:44:35] 2026-01-15 17:44:35,144 | INFO     | all workflow threads have been joined
[2026-01-15 12:44:35] 2026-01-15 17:44:35,144 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 12:44:35] 2026-01-15 17:44:35,144 | INFO     | traces error code: 0
[2026-01-15 12:44:35] 2026-01-15 17:44:35,145 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 12:44:35] 2026-01-15 17:44:35,408 [wrapper] ==== pilot stdout END ====
[2026-01-15 12:44:35] 2026-01-15 17:44:35,410 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 12:44:35] 2026-01-15 17:44:35,413 [wrapper] pilotpid: 601289
[2026-01-15 12:44:35] 2026-01-15 17:44:35,415 [wrapper] Pilot exit status: 0
[2026-01-15 12:44:35] 2026-01-15 17:44:35,452 [wrapper] pandaids: 6970459557
[2026-01-15 12:44:35] 2026-01-15 17:44:35,636 [wrapper] cleanup supervisor_pilot  795464 601290
[2026-01-15 12:44:35] 2026-01-15 17:44:35,640 [wrapper] Test setup, not cleaning
[2026-01-15 12:44:35] 2026-01-15 17:44:35,642 [wrapper] apfmon messages muted
[2026-01-15 12:44:35] 2026-01-15 17:44:35,645 [wrapper] ==== wrapper stdout END ====
[2026-01-15 12:44:35] 2026-01-15 17:44:35,648 [wrapper] ==== wrapper stderr END ====
[2026-01-15 12:44:35]  *** Error codes and diagnostics ***
[2026-01-15 12:44:36]     "exeErrorCode": 0,
[2026-01-15 12:44:36]     "exeErrorDiag": "",
[2026-01-15 12:44:36]     "pilotErrorCode": 0,
[2026-01-15 12:44:36]     "pilotErrorDiag": "",
[2026-01-15 12:44:36]  *** Listing of results directory ***
[2026-01-15 12:44:36] total 735768
[2026-01-15 12:44:36] -rw-r--r--. 1 boincer umatlas    579449 Jan 15 03:34 pilot3.tar.gz
[2026-01-15 12:44:36] -rwx------. 1 boincer umatlas     36322 Jan 15 03:38 runpilot2-wrapper.sh
[2026-01-15 12:44:36] -rw-r--r--. 1 boincer umatlas      5112 Jan 15 03:44 queuedata.json
[2026-01-15 12:44:36] -rw-r--r--. 1 boincer umatlas       100 Jan 15 11:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 12:44:36] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 15 11:28 run_atlas
[2026-01-15 12:44:36] -rw-r--r--. 1 boincer umatlas       105 Jan 15 11:28 job.xml
[2026-01-15 12:44:36] -rw-r--r--. 2 boincer umatlas 595013947 Jan 15 11:28 EVNT.32794306._001942.pool.root.1
[2026-01-15 12:44:36] -rw-r--r--. 2 boincer umatlas    592402 Jan 15 11:28 input.tar.gz
[2026-01-15 12:44:36] -rw-r--r--. 2 boincer umatlas     15847 Jan 15 11:28 start_atlas.sh
[2026-01-15 12:44:36] drwxrwx--x. 2 boincer umatlas      4096 Jan 15 11:28 shared
[2026-01-15 12:44:36] -rw-r--r--. 1 boincer umatlas         0 Jan 15 11:28 boinc_lockfile
[2026-01-15 12:44:36] -rw-r--r--. 1 boincer umatlas      2509 Jan 15 11:29 pandaJob.out
[2026-01-15 12:44:36] -rw-------. 1 boincer umatlas        57 Jan 15 11:29 setup.sh.local
[2026-01-15 12:44:36] -rw-------. 1 boincer umatlas   1004091 Jan 15 11:29 agis_schedconf.cvmfs.json
[2026-01-15 12:44:36] -rw-------. 1 boincer umatlas   1516246 Jan 15 11:29 agis_ddmendpoints.agis.ALL.json
[2026-01-15 12:44:36] drwx------. 5 boincer umatlas      4096 Jan 15 11:29 pilot3
[2026-01-15 12:44:36] -rw-r--r--. 1 boincer umatlas      6877 Jan 15 12:39 init_data.xml
[2026-01-15 12:44:36] -rw-------. 1 boincer umatlas 152489719 Jan 15 12:42 HITS.48215263._050014.pool.root.1
[2026-01-15 12:44:36] -rw-r--r--. 1 boincer umatlas       530 Jan 15 12:42 boinc_task_state.xml
[2026-01-15 12:44:36] -rw-------. 1 boincer umatlas      1037 Jan 15 12:43 memory_monitor_summary.json
[2026-01-15 12:44:36] -rw-------. 1 boincer umatlas    358540 Jan 15 12:43 log.48215263._050014.job.log.tgz.1
[2026-01-15 12:44:36] -rw-------. 1 boincer umatlas        95 Jan 15 12:43 pilot_heartbeat.json
[2026-01-15 12:44:36] -rw-------. 1 boincer umatlas      7825 Jan 15 12:43 heartbeat.json
[2026-01-15 12:44:36] -rw-r--r--. 1 boincer umatlas      8192 Jan 15 12:44 boinc_mmap_file
[2026-01-15 12:44:36] -rw-r--r--. 1 boincer umatlas        27 Jan 15 12:44 wrapper_checkpoint.txt
[2026-01-15 12:44:36] -rw-------. 1 boincer umatlas      5009 Jan 15 12:44 pilotlog.txt
[2026-01-15 12:44:36] -rw-------. 1 boincer umatlas    633065 Jan 15 12:44 log.48215263._050014.job.log.1
[2026-01-15 12:44:36] -rw-------. 1 boincer umatlas       357 Jan 15 12:44 output.list
[2026-01-15 12:44:36] -rw-r--r--. 1 boincer umatlas       620 Jan 15 12:44 runtime_log
[2026-01-15 12:44:36] -rw-------. 1 boincer umatlas   1013760 Jan 15 12:44 result.tar.gz
[2026-01-15 12:44:36] -rw-r--r--. 1 boincer umatlas      9354 Jan 15 12:44 runtime_log.err
[2026-01-15 12:44:36] -rw-------. 1 boincer umatlas       654 Jan 15 12:44 oTKMDmw2X08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmStuKDmkOf6kn.diag
[2026-01-15 12:44:36] -rw-r--r--. 1 boincer umatlas     22346 Jan 15 12:44 stderr.txt
[2026-01-15 12:44:36] HITS file was successfully produced:
[2026-01-15 12:44:36] -rw-------. 1 boincer umatlas 152489719 Jan 15 12:42 shared/HITS.pool.root.1
[2026-01-15 12:44:36]  *** Contents of shared directory: ***
[2026-01-15 12:44:36] total 731584
[2026-01-15 12:44:36] -rw-r--r--. 2 boincer umatlas 595013947 Jan 15 11:28 ATLAS.root_0
[2026-01-15 12:44:36] -rw-r--r--. 2 boincer umatlas    592402 Jan 15 11:28 input.tar.gz
[2026-01-15 12:44:36] -rw-r--r--. 2 boincer umatlas     15847 Jan 15 11:28 start_atlas.sh
[2026-01-15 12:44:36] -rw-------. 1 boincer umatlas 152489719 Jan 15 12:42 HITS.pool.root.1
[2026-01-15 12:44:36] -rw-------. 1 boincer umatlas   1013760 Jan 15 12:44 result.tar.gz
12:44:37 (596345): run_atlas exited; CPU time 28004.982485
12:44:37 (596345): called boinc_finish(0)

</stderr_txt>
]]>

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