Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:29:14 (939863): wrapper (7.7.26015): starting
04:29:14 (939863): wrapper: running run_atlas (--nthreads 3)
[2026-01-16 04:29:14] Arguments: --nthreads 3
[2026-01-16 04:29:14] Threads: 3
[2026-01-16 04:29:14] Checking for CVMFS
[2026-01-16 04:29:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-16 04:29:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-16 04:29:14] Running cvmfs_config stat atlas.cern.ch
[2026-01-16 04:29:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-16 04:29:15] 2.13.3.0 866440 238 51208 155181 2 188 15211598 15728640 0 130560 0 231311 99.991 5693 10 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-01-16 04:29:15] CVMFS is ok
[2026-01-16 04:29:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-16 04:29:15] Checking for apptainer binary...
[2026-01-16 04:29:15] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-16 04:29:15] Running /usr/bin/apptainer --version
[2026-01-16 04:29:15] apptainer version 1.4.5-2.el9
[2026-01-16 04:29:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-16 04:29:15] testio003
[2026-01-16 04:29:15] apptainer works
[2026-01-16 04:29:15] Set ATHENA_PROC_NUMBER=3
[2026-01-16 04:29:15] Set ATHENA_CORE_NUMBER=3
[2026-01-16 04:29:15] Starting ATLAS job with PandaID=6970569326
[2026-01-16 04:29:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-16 05:43:41]  *** The last 200 lines of the pilot log: ***
[2026-01-16 05:43:41] 2026-01-15 20:42:40,212 | INFO     | time since job start (4396s) is within the limit (349056.0s)
[2026-01-16 05:43:41] 2026-01-15 20:42:42,218 | INFO     | time since job start (4398s) is within the limit (349056.0s)
[2026-01-16 05:43:41] 2026-01-15 20:42:42,577 | INFO     | monitor loop #342: job 0:6970569326 is in state 'finished'
[2026-01-16 05:43:41] 2026-01-15 20:42:42,577 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 05:43:41] 2026-01-15 20:42:43,264 | INFO     | PID=943534 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-16 05:43:41] 2026-01-15 20:42:44,264 | INFO     | time since job start (4400s) is within the limit (349056.0s)
[2026-01-16 05:43:41] 2026-01-15 20:42:45,080 | INFO     | monitor loop #343: job 0:6970569326 is in state 'finished'
[2026-01-16 05:43:41] 2026-01-15 20:42:45,080 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 05:43:41] 2026-01-15 20:42:46,269 | INFO     | time since job start (4402s) is within the limit (349056.0s)
[2026-01-16 05:43:41] 2026-01-15 20:42:47,583 | INFO     | monitor loop #344: job 0:6970569326 is in state 'finished'
[2026-01-16 05:43:41] 2026-01-15 20:42:47,583 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 05:43:41] 2026-01-15 20:42:48,274 | INFO     | time since job start (4404s) is within the limit (349056.0s)
[2026-01-16 05:43:41] 2026-01-15 20:42:50,085 | INFO     | monitor loop #345: job 0:6970569326 is in state 'finished'
[2026-01-16 05:43:41] 2026-01-15 20:42:50,085 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 05:43:41] 2026-01-15 20:42:50,280 | INFO     | time since job start (4406s) is within the limit (349056.0s)
[2026-01-16 05:43:41] 2026-01-15 20:42:52,285 | INFO     | time since job start (4408s) is within the limit (349056.0s)
[2026-01-16 05:43:41] 2026-01-15 20:42:52,587 | INFO     | monitor loop #346: job 0:6970569326 is in state 'finished'
[2026-01-16 05:43:41] 2026-01-15 20:42:52,587 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 05:43:41] 2026-01-15 20:42:54,290 | INFO     | time since job start (4410s) is within the limit (349056.0s)
[2026-01-16 05:43:41] 2026-01-15 20:42:55,090 | INFO     | monitor loop #347: job 0:6970569326 is in state 'finished'
[2026-01-16 05:43:41] 2026-01-15 20:42:55,090 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 05:43:41] 2026-01-15 20:42:56,295 | INFO     | time since job start (4412s) is within the limit (349056.0s)
[2026-01-16 05:43:41] 2026-01-15 20:42:57,593 | INFO     | monitor loop #348: job 0:6970569326 is in state 'finished'
[2026-01-16 05:43:41] 2026-01-15 20:42:57,593 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 05:43:41] 2026-01-15 20:42:58,300 | INFO     | time since job start (4414s) is within the limit (349056.0s)
[2026-01-16 05:43:41] 2026-01-15 20:43:00,095 | INFO     | monitor loop #349: job 0:6970569326 is in state 'finished'
[2026-01-16 05:43:41] 2026-01-15 20:43:00,095 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 05:43:41] 2026-01-15 20:43:00,305 | INFO     | time since job start (4416s) is within the limit (349056.0s)
[2026-01-16 05:43:41] 2026-01-15 20:43:02,310 | INFO     | time since job start (4418s) is within the limit (349056.0s)
[2026-01-16 05:43:41] 2026-01-15 20:43:02,598 | INFO     | monitor loop #350: job 0:6970569326 is in state 'finished'
[2026-01-16 05:43:41] 2026-01-15 20:43:02,598 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 05:43:41] 2026-01-15 20:43:04,315 | INFO     | time since job start (4420s) is within the limit (349056.0s)
[2026-01-16 05:43:41] 2026-01-15 20:43:05,100 | INFO     | monitor loop #351: job 0:6970569326 is in state 'finished'
[2026-01-16 05:43:41] 2026-01-15 20:43:05,100 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 05:43:41] 2026-01-15 20:43:05,361 | INFO     | PID=943534 has CPU usage=0.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-16 05:43:41] 2026-01-15 20:43:06,361 | INFO     | time since job start (4422s) is within the limit (349056.0s)
[2026-01-16 05:43:41] 2026-01-15 20:43:07,603 | INFO     | monitor loop #352: job 0:6970569326 is in state 'finished'
[2026-01-16 05:43:41] 2026-01-15 20:43:07,603 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 05:43:41] 2026-01-15 20:43:08,366 | INFO     | time since job start (4424s) is within the limit (349056.0s)
[2026-01-16 05:43:41] 2026-01-15 20:43:09,386 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-16 05:43:41] 2026-01-15 20:43:09,387 | INFO     | found 4 cores (4 cores per socket, 1 socket) , CPU MHz: 3694.5387499999997
[2026-01-16 05:43:41] 2026-01-15 20:43:09,387 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6970569326/memory_monitor_summary.json (trf name=prmon)
[2026-01-16 05:43:41] 2026-01-15 20:43:09,387 | INFO     | extracted standard info from prmon json
[2026-01-16 05:43:41] 2026-01-15 20:43:09,388 | INFO     | extracted standard memory fields from prmon json
[2026-01-16 05:43:41] 2026-01-15 20:43:09,388 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-16 05:43:41] 2026-01-15 20:43:09,388 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-16 05:43:41] 2026-01-15 20:43:09,388 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-16 05:43:41] 2026-01-15 20:43:09,389 | INFO     | fitting pss+swap vs Time
[2026-01-16 05:43:41] 2026-01-15 20:43:09,389 | INFO     | sum of square deviations: 81269827.75
[2026-01-16 05:43:41] 2026-01-15 20:43:09,389 | INFO     | sum of deviations: -3857460200.625
[2026-01-16 05:43:41] 2026-01-15 20:43:09,389 | INFO     | mean x: 1768507613.5625
[2026-01-16 05:43:41] 2026-01-15 20:43:09,389 | INFO     | mean y: 2409627.90625
[2026-01-16 05:43:41] 2026-01-15 20:43:09,389 | INFO     | intersect: 83944358598.25633
[2026-01-16 05:43:41] 2026-01-15 20:43:09,389 | INFO     | chi2: 0.10273663879646745
[2026-01-16 05:43:41] 2026-01-15 20:43:09,389 | INFO     | current memory leak: -47.46 B/s (using 64 data points, chi2=0.10)
[2026-01-16 05:43:41] 2026-01-15 20:43:09,389 | INFO     | could have reported an average CPU frequency of 3628 MHz (6 samples)
[2026-01-16 05:43:41] 2026-01-15 20:43:09,389 | INFO     | ..............................
[2026-01-16 05:43:41] 2026-01-15 20:43:09,389 | INFO     | . Timing measurements:
[2026-01-16 05:43:41] 2026-01-15 20:43:09,389 | INFO     | . get job = 0 s
[2026-01-16 05:43:41] 2026-01-15 20:43:09,390 | INFO     | . initial setup = 4 s
[2026-01-16 05:43:41] 2026-01-15 20:43:09,390 | INFO     | . payload setup = 4 s
[2026-01-16 05:43:41] 2026-01-15 20:43:09,390 | INFO     | . stage-in = 0 s
[2026-01-16 05:43:41] 2026-01-15 20:43:09,390 | INFO     | . payload execution = 4319 s
[2026-01-16 05:43:41] 2026-01-15 20:43:09,390 | INFO     | . stage-out = 0 s
[2026-01-16 05:43:41] 2026-01-15 20:43:09,390 | INFO     | . log creation = 0 s
[2026-01-16 05:43:41] 2026-01-15 20:43:09,390 | INFO     | ..............................
[2026-01-16 05:43:41] 2026-01-15 20:43:09,448 | INFO     | 
[2026-01-16 05:43:41] 2026-01-15 20:43:09,449 | INFO     | job summary report
[2026-01-16 05:43:41] 2026-01-15 20:43:09,449 | INFO     | --------------------------------------------------
[2026-01-16 05:43:41] 2026-01-15 20:43:09,449 | INFO     | PanDA job id: 6970569326
[2026-01-16 05:43:41] 2026-01-15 20:43:09,449 | INFO     | task id: 48215263
[2026-01-16 05:43:41] 2026-01-15 20:43:09,449 | INFO     | errors: (none)
[2026-01-16 05:43:41] 2026-01-15 20:43:09,449 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-16 05:43:41] 2026-01-15 20:43:09,449 | INFO     | pilot state: finished 
[2026-01-16 05:43:41] 2026-01-15 20:43:09,449 | INFO     | transexitcode: 0
[2026-01-16 05:43:41] 2026-01-15 20:43:09,449 | INFO     | exeerrorcode: 0
[2026-01-16 05:43:41] 2026-01-15 20:43:09,449 | INFO     | exeerrordiag: 
[2026-01-16 05:43:41] 2026-01-15 20:43:09,449 | INFO     | exitcode: 0
[2026-01-16 05:43:41] 2026-01-15 20:43:09,449 | INFO     | exitmsg: OK
[2026-01-16 05:43:41] 2026-01-15 20:43:09,449 | INFO     | cpuconsumptiontime: 12118 s
[2026-01-16 05:43:41] 2026-01-15 20:43:09,449 | INFO     | nevents: 400
[2026-01-16 05:43:41] 2026-01-15 20:43:09,449 | INFO     | neventsw: 0
[2026-01-16 05:43:41] 2026-01-15 20:43:09,449 | INFO     | pid: 950079
[2026-01-16 05:43:41] 2026-01-15 20:43:09,449 | INFO     | pgrp: 950079
[2026-01-16 05:43:41] 2026-01-15 20:43:09,449 | INFO     | corecount: 3
[2026-01-16 05:43:41] 2026-01-15 20:43:09,449 | INFO     | event service: False
[2026-01-16 05:43:41] 2026-01-15 20:43:09,449 | INFO     | sizes: {0: 2283725, 1: 2283980, 4: 2284242, 11: 2284270, 4328: 2319379, 4411: 2319517}
[2026-01-16 05:43:41] 2026-01-15 20:43:09,449 | INFO     | --------------------------------------------------
[2026-01-16 05:43:41] 2026-01-15 20:43:09,449 | INFO     | 
[2026-01-16 05:43:41] 2026-01-15 20:43:09,449 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2026-01-16 05:43:41] 2026-01-15 20:43:09,459 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-16 05:43:41] 2026-01-15 20:43:09,459 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-16 05:43:41] 2026-01-15 20:43:09,459 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-16 05:43:41] 2026-01-15 20:43:09,459 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-16 05:43:41] 2026-01-15 20:43:09,459 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-16 05:43:41] 2026-01-15 20:43:09,459 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-16 05:43:41] 2026-01-15 20:43:09,459 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-16 05:43:41] 2026-01-15 20:43:09,460 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-16 05:43:41] 2026-01-15 20:43:09,460 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-16 05:43:41] 2026-01-15 20:43:09,460 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-16 05:43:41] 2026-01-15 20:43:09,460 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-16 05:43:41] 2026-01-15 20:43:09,460 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-16 05:43:41] 2026-01-15 20:43:09,460 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-16 05:43:41] 2026-01-15 20:43:09,460 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-16 05:43:41] 2026-01-15 20:43:09,460 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-16 05:43:41] 2026-01-15 20:43:09,460 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-16 05:43:41] 2026-01-15 20:43:09,460 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-16 05:43:41] 2026-01-15 20:43:09,460 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-16 05:43:41] 2026-01-15 20:43:09,460 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-16 05:43:41] 2026-01-15 20:43:09,460 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-16 05:43:41] 2026-01-15 20:43:09,460 | INFO     | job 6970569326 has completed (purged errors)
[2026-01-16 05:43:41] 2026-01-15 20:43:09,460 | INFO     | overall cleanup function is called
[2026-01-16 05:43:41] 2026-01-15 20:43:10,466 | INFO     | --- collectZombieJob: --- 10, [950079]
[2026-01-16 05:43:41] 2026-01-15 20:43:10,466 | INFO     | zombie collector waiting for pid 950079
[2026-01-16 05:43:41] 2026-01-15 20:43:10,466 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-16 05:43:41] 2026-01-15 20:43:10,466 | INFO     | collected zombie processes
[2026-01-16 05:43:41] 2026-01-15 20:43:10,467 | INFO     | will attempt to kill all subprocesses of pid=950079
[2026-01-16 05:43:41] 2026-01-15 20:43:10,499 | INFO     | process IDs to be killed: [950079] (in reverse order)
[2026-01-16 05:43:41] 2026-01-15 20:43:10,525 | WARNING  | found no corresponding commands to process id(s)
[2026-01-16 05:43:41] 2026-01-15 20:43:10,525 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-16 05:43:41] 2026-01-15 20:43:10,526 | INFO     | did not find any defunct processes belonging to 950079
[2026-01-16 05:43:41] 2026-01-15 20:43:10,527 | INFO     | did not find any defunct processes belonging to 950079
[2026-01-16 05:43:41] 2026-01-15 20:43:10,527 | INFO     | ready for new job
[2026-01-16 05:43:41] 2026-01-15 20:43:10,527 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-16 05:43:41] 2026-01-15 20:43:10,528 | INFO     | ***************************************
[2026-01-16 05:43:41] 2026-01-15 20:43:10,528 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-16 05:43:41] 2026-01-15 20:43:10,528 | INFO     | ***************************************
[2026-01-16 05:43:41] 2026-01-15 20:43:10,528 | INFO     | 
[2026-01-16 05:43:41] 2026-01-15 20:43:10,528 | INFO     | architecture information:
[2026-01-16 05:43:41] 2026-01-15 20:43:10,529 | INFO     | executing command: cat /etc/os-release
[2026-01-16 05:43:41] 2026-01-15 20:43:10,535 | INFO     | cat /etc/os-release:
[2026-01-16 05:43:41] NAME="CentOS Linux"
[2026-01-16 05:43:41] VERSION="7 (Core)"
[2026-01-16 05:43:41] ID="centos"
[2026-01-16 05:43:41] ID_LIKE="rhel fedora"
[2026-01-16 05:43:41] VERSION_ID="7"
[2026-01-16 05:43:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-16 05:43:41] ANSI_COLOR="0;31"
[2026-01-16 05:43:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-16 05:43:41] HOME_URL="https://www.centos.org/"
[2026-01-16 05:43:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-16 05:43:41] 
[2026-01-16 05:43:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-16 05:43:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-16 05:43:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-16 05:43:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-16 05:43:41] 
[2026-01-16 05:43:41] 2026-01-15 20:43:10,536 | INFO     | ***************************************
[2026-01-16 05:43:41] 2026-01-15 20:43:11,038 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2026-01-16 05:43:41] 2026-01-15 20:43:11,048 | INFO     | sufficient remaining disk space (47882174464 B)
[2026-01-16 05:43:41] 2026-01-15 20:43:11,048 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-16 05:43:41] 2026-01-15 20:43:11,048 | INFO     | current server update state: UPDATING_FINAL
[2026-01-16 05:43:41] 2026-01-15 20:43:11,048 | INFO     | update_server=False
[2026-01-16 05:43:41] 2026-01-15 20:43:11,048 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-16 05:43:41] 2026-01-15 20:43:11,049 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-16 05:43:41] 2026-01-15 20:43:11,049 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-16 05:43:41] 2026-01-15 20:43:11,110 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-16 05:43:41] 2026-01-15 20:43:11,110 | INFO     | aborting loop
[2026-01-16 05:43:41] 2026-01-15 20:43:11,343 | INFO     | all data control threads have been joined
[2026-01-16 05:43:41] 2026-01-15 20:43:11,536 | INFO     | all job control threads have been joined
[2026-01-16 05:43:41] 2026-01-15 20:43:12,053 | INFO     | [job] retrieve thread has finished
[2026-01-16 05:43:41] 2026-01-15 20:43:12,054 | INFO     | [job] queue monitor thread has finished
[2026-01-16 05:43:41] 2026-01-15 20:43:12,070 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-16 05:43:41] 2026-01-15 20:43:12,115 | INFO     | [job] job monitor thread has finished
[2026-01-16 05:43:41] 2026-01-15 20:43:12,142 | INFO     | [payload] validate_pre thread has finished
[2026-01-16 05:43:41] 2026-01-15 20:43:12,154 | INFO     | [job] create_data_payload thread has finished
[2026-01-16 05:43:41] 2026-01-15 20:43:12,209 | INFO     | [payload] failed_post thread has finished
[2026-01-16 05:43:41] 2026-01-15 20:43:12,309 | INFO     | all payload control threads have been joined
[2026-01-16 05:43:41] 2026-01-15 20:43:12,348 | INFO     | [data] control thread has finished
[2026-01-16 05:43:41] 2026-01-15 20:43:12,541 | INFO     | [job] control thread has finished
[2026-01-16 05:43:41] 2026-01-15 20:43:12,777 | INFO     | [payload] validate_post thread has finished
[2026-01-16 05:43:41] 2026-01-15 20:43:12,931 | INFO     | [data] copytool_in thread has finished
[2026-01-16 05:43:41] 2026-01-15 20:43:13,054 | INFO     | [data] copytool_out thread has finished
[2026-01-16 05:43:41] 2026-01-15 20:43:13,314 | INFO     | [payload] control thread has finished
[2026-01-16 05:43:41] 2026-01-15 20:43:13,376 | INFO     | [payload] execute_payloads thread has finished
[2026-01-16 05:43:41] 2026-01-15 20:43:13,511 | INFO     | [job] validate thread has finished
[2026-01-16 05:43:41] 2026-01-15 20:43:14,273 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-16 05:43:41] 2026-01-15 20:43:18,278 | INFO     | [data] queue_monitor thread has finished
[2026-01-16 05:43:41] 2026-01-15 20:43:30,931 | INFO     | [monitor] cgroup control has ended
[2026-01-16 05:43:41] 2026-01-15 20:43:32,821 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140465212352320)>', '<ExcThread(monitor, started 140464866969344)>']
[2026-01-16 05:43:41] 2026-01-15 20:43:37,827 | INFO     | all workflow threads have been joined
[2026-01-16 05:43:41] 2026-01-15 20:43:37,827 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-16 05:43:41] 2026-01-15 20:43:37,828 | INFO     | traces error code: 0
[2026-01-16 05:43:41] 2026-01-15 20:43:37,828 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-16 05:43:41] 2026-01-15 20:43:41,470 | INFO     | PID=943534 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-16 05:43:41] 2026-01-15 20:43:41,470 | INFO     | found 0 job(s) in 20 queues
[2026-01-16 05:43:41] 2026-01-15 20:43:41,470 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-16 05:43:41] 2026-01-15 20:43:41,470 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-16 05:43:41] 2026-01-15 20:43:41,470 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-16 05:43:41] 2026-01-15 20:43:41,470 | INFO     | [monitor] control thread has ended
[2026-01-16 05:43:41] 2026-01-15 20:43:41,531 [wrapper] ==== pilot stdout END ====
[2026-01-16 05:43:41] 2026-01-15 20:43:41,532 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-16 05:43:41] 2026-01-15 20:43:41,534 [wrapper] pilotpid: 943534
[2026-01-16 05:43:41] 2026-01-15 20:43:41,535 [wrapper] Pilot exit status: 0
[2026-01-16 05:43:41] 2026-01-15 20:43:41,541 [wrapper] pandaids: 6970569326
[2026-01-16 05:43:41] 2026-01-15 20:43:41,553 [wrapper] cleanup supervisor_pilot  959254 943535
[2026-01-16 05:43:41] 2026-01-15 20:43:41,555 [wrapper] Test setup, not cleaning
[2026-01-16 05:43:41] 2026-01-15 20:43:41,556 [wrapper] apfmon messages muted
[2026-01-16 05:43:41] 2026-01-15 20:43:41,558 [wrapper] ==== wrapper stdout END ====
[2026-01-16 05:43:41] 2026-01-15 20:43:41,559 [wrapper] ==== wrapper stderr END ====
[2026-01-16 05:43:41]  *** Error codes and diagnostics ***
[2026-01-16 05:43:41]     "exeErrorCode": 0,
[2026-01-16 05:43:41]     "exeErrorDiag": "",
[2026-01-16 05:43:41]     "pilotErrorCode": 0,
[2026-01-16 05:43:41]     "pilotErrorDiag": "",
[2026-01-16 05:43:41]  *** Listing of results directory ***
[2026-01-16 05:43:41] total 733300
[2026-01-16 05:43:41] -rw-r--r--. 1 boinc boinc    579449 Jan 15 17:34 pilot3.tar.gz
[2026-01-16 05:43:41] -rwx------. 1 boinc boinc     36322 Jan 15 17:39 runpilot2-wrapper.sh
[2026-01-16 05:43:41] -rw-r--r--. 1 boinc boinc      5112 Jan 15 17:44 queuedata.json
[2026-01-16 05:43:41] -rw-r--r--. 1 boinc boinc       100 Jan 16 04:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-16 05:43:41] -rwxr-xr-x. 1 boinc boinc      7986 Jan 16 04:29 run_atlas
[2026-01-16 05:43:41] -rw-r--r--. 1 boinc boinc       105 Jan 16 04:29 job.xml
[2026-01-16 05:43:41] -rw-r--r--. 1 boinc boinc      9407 Jan 16 04:29 init_data.xml
[2026-01-16 05:43:41] -rw-r--r--. 2 boinc boinc 596264525 Jan 16 04:29 EVNT.32794306._001999.pool.root.1
[2026-01-16 05:43:41] -rw-r--r--. 2 boinc boinc     15847 Jan 16 04:29 start_atlas.sh
[2026-01-16 05:43:41] drwxrwx--x. 2 boinc boinc        68 Jan 16 04:29 shared
[2026-01-16 05:43:41] -rw-r--r--. 2 boinc boinc    592401 Jan 16 04:29 input.tar.gz
[2026-01-16 05:43:41] -rw-r--r--. 1 boinc boinc         0 Jan 16 04:29 boinc_lockfile
[2026-01-16 05:43:41] -rw-r--r--. 1 boinc boinc      2509 Jan 16 04:29 pandaJob.out
[2026-01-16 05:43:41] -rw-------. 1 boinc boinc   1004083 Jan 16 04:29 agis_schedconf.cvmfs.json
[2026-01-16 05:43:41] -rw-------. 1 boinc boinc   1516246 Jan 16 04:29 agis_ddmendpoints.agis.ALL.json
[2026-01-16 05:43:41] drwx------. 5 boinc boinc      4096 Jan 16 04:29 pilot3
[2026-01-16 05:43:41] -rw-------. 1 boinc boinc 148938585 Jan 16 05:41 HITS.48215263._051441.pool.root.1
[2026-01-16 05:43:41] -rw-r--r--. 1 boinc boinc       530 Jan 16 05:41 boinc_task_state.xml
[2026-01-16 05:43:41] -rw-------. 1 boinc boinc      1014 Jan 16 05:41 memory_monitor_summary.json
[2026-01-16 05:43:41] -rw-------. 1 boinc boinc    243018 Jan 16 05:41 log.48215263._051441.job.log.tgz.1
[2026-01-16 05:43:41] -rw-------. 1 boinc boinc      7759 Jan 16 05:43 heartbeat.json
[2026-01-16 05:43:41] -rw-r--r--. 1 boinc boinc      8192 Jan 16 05:43 boinc_mmap_file
[2026-01-16 05:43:41] -rw-r--r--. 1 boinc boinc        27 Jan 16 05:43 wrapper_checkpoint.txt
[2026-01-16 05:43:41] -rw-------. 1 boinc boinc       746 Jan 16 05:43 pilotlog.txt
[2026-01-16 05:43:41] -rw-------. 1 boinc boinc        95 Jan 16 05:43 pilot_heartbeat.json
[2026-01-16 05:43:41] -rw-------. 1 boinc boinc    645240 Jan 16 05:43 log.48215263._051441.job.log.1
[2026-01-16 05:43:41] -rw-------. 1 boinc boinc       357 Jan 16 05:43 output.list
[2026-01-16 05:43:41] -rw-r--r--. 1 boinc boinc       620 Jan 16 05:43 runtime_log
[2026-01-16 05:43:41] -rw-------. 1 boinc boinc    911360 Jan 16 05:43 result.tar.gz
[2026-01-16 05:43:41] -rw-------. 1 boinc boinc       642 Jan 16 05:43 XKHODmn3X08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmGmoKDmGF5O1n.diag
[2026-01-16 05:43:41] -rw-r--r--. 1 boinc boinc      8775 Jan 16 05:43 runtime_log.err
[2026-01-16 05:43:41] -rw-r--r--. 1 boinc boinc     22147 Jan 16 05:43 stderr.txt
[2026-01-16 05:43:41] HITS file was successfully produced:
[2026-01-16 05:43:41] -rw-------. 1 boinc boinc 148938585 Jan 16 05:41 shared/HITS.pool.root.1
[2026-01-16 05:43:41]  *** Contents of shared directory: ***
[2026-01-16 05:43:41] total 729228
[2026-01-16 05:43:41] -rw-r--r--. 2 boinc boinc 596264525 Jan 16 04:29 ATLAS.root_0
[2026-01-16 05:43:41] -rw-r--r--. 2 boinc boinc     15847 Jan 16 04:29 start_atlas.sh
[2026-01-16 05:43:41] -rw-r--r--. 2 boinc boinc    592401 Jan 16 04:29 input.tar.gz
[2026-01-16 05:43:41] -rw-------. 1 boinc boinc 148938585 Jan 16 05:41 HITS.pool.root.1
[2026-01-16 05:43:41] -rw-------. 1 boinc boinc    911360 Jan 16 05:43 result.tar.gz
05:43:42 (939863): run_atlas exited; CPU time 12124.648121
05:43:42 (939863): called boinc_finish(0)

</stderr_txt>
]]>

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