Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:54:27 (2616214): wrapper (7.7.26015): starting
22:54:27 (2616214): wrapper: running run_atlas (--nthreads 12)
[2026-01-15 22:54:27] Arguments: --nthreads 12
[2026-01-15 22:54:27] Threads: 12
[2026-01-15 22:54:27] Checking for CVMFS
[2026-01-15 22:54:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 22:54:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 22:54:28] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 22:54:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 22:54:28] 2.13.3.0 1705791 11817 212684 155185 1 137 26914770 46080000 16734 130560 0 63616054 99.853 26681226 28797 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2026-01-15 22:54:28] CVMFS is ok
[2026-01-15 22:54:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 22:54:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 22:54:28] Further information can be found at the LHC@home message board.
[2026-01-15 22:54:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 22:54:28] Checking for apptainer binary...
[2026-01-15 22:54:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 22:54:28] Running /usr/bin/apptainer --version
[2026-01-15 22:54:29] apptainer version 1.4.5-2.el9
[2026-01-15 22:54:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 22:54:29] mff2101.farm.particle.cz
[2026-01-15 22:54:29] apptainer works
[2026-01-15 22:54:29] Set ATHENA_PROC_NUMBER=12
[2026-01-15 22:54:29] Set ATHENA_CORE_NUMBER=12
[2026-01-15 22:54:29] Starting ATLAS job with PandaID=6970568846
[2026-01-15 22:54:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-16 00:05:38]  *** The last 200 lines of the pilot log: ***
[2026-01-16 00:05:38] 2026-01-15 23:00:17,051 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-16 00:05:38] 2026-01-15 23:00:17,168 | INFO     | time since job start (3893s) is within the limit (349056.0s)
[2026-01-16 00:05:38] 2026-01-15 23:00:17,460 | INFO     | job 6970568846 has state=finished
[2026-01-16 00:05:38] 2026-01-15 23:00:17,460 | INFO     | preparing for final server update for job 6970568846 in state='finished'
[2026-01-16 00:05:38] 2026-01-15 23:00:17,461 | INFO     | this job has now completed (state=finished)
[2026-01-16 00:05:38] 2026-01-15 23:00:17,461 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-16 00:05:38] 2026-01-15 23:00:17,461 | INFO     | log transfer has been attempted: DONE
[2026-01-16 00:05:38] 2026-01-15 23:00:17,461 | INFO     | job 6970568846 has finished - writing final server update
[2026-01-16 00:05:38] 2026-01-15 23:00:17,461 | INFO     | total number of processed events: 400 (read)
[2026-01-16 00:05:38] 2026-01-15 23:00:17,490 | INFO     | executing command: lscpu
[2026-01-16 00:05:38] 2026-01-15 23:00:17,571 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-16 00:05:38] 2026-01-15 23:00:19,053 | WARNING  | process 2696846 can no longer be monitored (due to stat problems) - aborting
[2026-01-16 00:05:38] 2026-01-15 23:00:19,054 | INFO     | using path: /scratch/.boinc/slots/7/PanDA_Pilot-6970568846/memory_monitor_summary.json (trf name=prmon)
[2026-01-16 00:05:38] 2026-01-15 23:00:19,175 | INFO     | time since job start (3895s) is within the limit (349056.0s)
[2026-01-16 00:05:38] 2026-01-15 23:00:19,488 | INFO     | number of running child processes to parent process 2696846: 1
[2026-01-16 00:05:38] 2026-01-15 23:00:19,488 | INFO     | maximum number of monitored processes: 6
[2026-01-16 00:05:38] 2026-01-15 23:00:21,186 | INFO     | time since job start (3897s) is within the limit (349056.0s)
[2026-01-16 00:05:38] 2026-01-15 23:00:21,991 | INFO     | monitor loop #275: job 0:6970568846 is in state 'finished'
[2026-01-16 00:05:38] 2026-01-15 23:00:21,991 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 00:05:38] 2026-01-15 23:00:23,193 | INFO     | time since job start (3899s) is within the limit (349056.0s)
[2026-01-16 00:05:38] 2026-01-15 23:00:24,496 | INFO     | monitor loop #276: job 0:6970568846 is in state 'finished'
[2026-01-16 00:05:38] 2026-01-15 23:00:24,496 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 00:05:38] 2026-01-15 23:00:25,199 | INFO     | time since job start (3901s) is within the limit (349056.0s)
[2026-01-16 00:05:38] 2026-01-15 23:00:26,876 | INFO     | PID=2640744 has CPU usage=13.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-16 00:05:38] 2026-01-15 23:00:26,876 | INFO     | .. there are 19 such processes running
[2026-01-16 00:05:38] 2026-01-15 23:00:27,009 | INFO     | monitor loop #277: job 0:6970568846 is in state 'finished'
[2026-01-16 00:05:38] 2026-01-15 23:00:27,009 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 00:05:38] 2026-01-15 23:00:27,878 | INFO     | time since job start (3903s) is within the limit (349056.0s)
[2026-01-16 00:05:38] 2026-01-15 23:00:29,512 | INFO     | monitor loop #278: job 0:6970568846 is in state 'finished'
[2026-01-16 00:05:38] 2026-01-15 23:00:29,512 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 00:05:38] 2026-01-15 23:00:29,886 | INFO     | time since job start (3905s) is within the limit (349056.0s)
[2026-01-16 00:05:38] 2026-01-15 23:00:29,886 | INFO     | 3908s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-16 00:05:38] 2026-01-15 23:00:31,893 | INFO     | time since job start (3907s) is within the limit (349056.0s)
[2026-01-16 00:05:38] 2026-01-15 23:00:32,016 | INFO     | monitor loop #279: job 0:6970568846 is in state 'finished'
[2026-01-16 00:05:38] 2026-01-15 23:00:32,016 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 00:05:38] 2026-01-15 23:00:33,792 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-16 00:05:38] 2026-01-15 23:00:33,804 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2769.104072916667
[2026-01-16 00:05:38] 2026-01-15 23:00:33,821 | INFO     | using path: /scratch/.boinc/slots/7/PanDA_Pilot-6970568846/memory_monitor_summary.json (trf name=prmon)
[2026-01-16 00:05:38] 2026-01-15 23:00:33,821 | INFO     | extracted standard info from prmon json
[2026-01-16 00:05:38] 2026-01-15 23:00:33,822 | INFO     | extracted standard memory fields from prmon json
[2026-01-16 00:05:38] 2026-01-15 23:00:33,822 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-16 00:05:38] 2026-01-15 23:00:33,822 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-16 00:05:38] 2026-01-15 23:00:33,822 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-16 00:05:38] 2026-01-15 23:00:33,823 | INFO     | fitting pss+swap vs Time
[2026-01-16 00:05:38] 2026-01-15 23:00:33,823 | INFO     | sum of square deviations: 54437925.98214283
[2026-01-16 00:05:38] 2026-01-15 23:00:33,824 | INFO     | sum of deviations: 34743490.16071429
[2026-01-16 00:05:38] 2026-01-15 23:00:33,824 | INFO     | mean x: 1768516191.517857
[2026-01-16 00:05:38] 2026-01-15 23:00:33,824 | INFO     | mean y: 2744656.339285714
[2026-01-16 00:05:38] 2026-01-15 23:00:33,824 | INFO     | intersect: -1125961549.6837006
[2026-01-16 00:05:38] 2026-01-15 23:00:33,824 | INFO     | chi2: 0.0020465610558630335
[2026-01-16 00:05:38] 2026-01-15 23:00:33,824 | INFO     | current memory leak: 0.64 B/s (using 56 data points, chi2=0.00)
[2026-01-16 00:05:38] 2026-01-15 23:00:33,824 | INFO     | could have reported an average CPU frequency of 2746 MHz (6 samples)
[2026-01-16 00:05:38] 2026-01-15 23:00:33,824 | INFO     | ..............................
[2026-01-16 00:05:38] 2026-01-15 23:00:33,825 | INFO     | . Timing measurements:
[2026-01-16 00:05:38] 2026-01-15 23:00:33,825 | INFO     | . get job = 0 s
[2026-01-16 00:05:38] 2026-01-15 23:00:33,825 | INFO     | . initial setup = 2 s
[2026-01-16 00:05:38] 2026-01-15 23:00:33,825 | INFO     | . payload setup = 17 s
[2026-01-16 00:05:38] 2026-01-15 23:00:33,825 | INFO     | . stage-in = 0 s
[2026-01-16 00:05:38] 2026-01-15 23:00:33,825 | INFO     | . payload execution = 3814 s
[2026-01-16 00:05:38] 2026-01-15 23:00:33,825 | INFO     | . stage-out = 1 s
[2026-01-16 00:05:38] 2026-01-15 23:00:33,825 | INFO     | . log creation = 0 s
[2026-01-16 00:05:38] 2026-01-15 23:00:33,825 | INFO     | ..............................
[2026-01-16 00:05:38] 2026-01-15 23:00:33,904 | INFO     | time since job start (3909s) is within the limit (349056.0s)
[2026-01-16 00:05:38] 2026-01-15 23:00:34,222 | INFO     | 
[2026-01-16 00:05:38] 2026-01-15 23:00:34,222 | INFO     | job summary report
[2026-01-16 00:05:38] 2026-01-15 23:00:34,222 | INFO     | --------------------------------------------------
[2026-01-16 00:05:38] 2026-01-15 23:00:34,222 | INFO     | PanDA job id: 6970568846
[2026-01-16 00:05:38] 2026-01-15 23:00:34,222 | INFO     | task id: 48215263
[2026-01-16 00:05:38] 2026-01-15 23:00:34,222 | INFO     | errors: (none)
[2026-01-16 00:05:38] 2026-01-15 23:00:34,222 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-16 00:05:38] 2026-01-15 23:00:34,222 | INFO     | pilot state: finished 
[2026-01-16 00:05:38] 2026-01-15 23:00:34,222 | INFO     | transexitcode: 0
[2026-01-16 00:05:38] 2026-01-15 23:00:34,223 | INFO     | exeerrorcode: 0
[2026-01-16 00:05:38] 2026-01-15 23:00:34,223 | INFO     | exeerrordiag: 
[2026-01-16 00:05:38] 2026-01-15 23:00:34,223 | INFO     | exitcode: 0
[2026-01-16 00:05:38] 2026-01-15 23:00:34,223 | INFO     | exitmsg: OK
[2026-01-16 00:05:38] 2026-01-15 23:00:34,223 | INFO     | cpuconsumptiontime: 26399 s
[2026-01-16 00:05:38] 2026-01-15 23:00:34,223 | INFO     | nevents: 400
[2026-01-16 00:05:38] 2026-01-15 23:00:34,223 | INFO     | neventsw: 0
[2026-01-16 00:05:38] 2026-01-15 23:00:34,223 | INFO     | pid: 2696846
[2026-01-16 00:05:38] 2026-01-15 23:00:34,223 | INFO     | pgrp: 2696846
[2026-01-16 00:05:38] 2026-01-15 23:00:34,223 | INFO     | corecount: 12
[2026-01-16 00:05:38] 2026-01-15 23:00:34,223 | INFO     | event service: False
[2026-01-16 00:05:38] 2026-01-15 23:00:34,223 | INFO     | sizes: {0: 2283782, 1: 2283981, 12: 2283981, 23: 2284009, 26: 2284299, 33: 2284327, 3836: 2310387, 3838: 2319443, 3855: 2319581}
[2026-01-16 00:05:38] 2026-01-15 23:00:34,223 | INFO     | --------------------------------------------------
[2026-01-16 00:05:38] 2026-01-15 23:00:34,223 | INFO     | 
[2026-01-16 00:05:38] 2026-01-15 23:00:34,224 | INFO     | executing command: ls -lF /scratch/.boinc/slots/7
[2026-01-16 00:05:38] 2026-01-15 23:00:34,333 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-16 00:05:38] 2026-01-15 23:00:34,333 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-16 00:05:38] 2026-01-15 23:00:34,333 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-16 00:05:38] 2026-01-15 23:00:34,334 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-16 00:05:38] 2026-01-15 23:00:34,334 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-16 00:05:38] 2026-01-15 23:00:34,334 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-16 00:05:38] 2026-01-15 23:00:34,334 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-16 00:05:38] 2026-01-15 23:00:34,334 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-16 00:05:38] 2026-01-15 23:00:34,334 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-16 00:05:38] 2026-01-15 23:00:34,334 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-16 00:05:38] 2026-01-15 23:00:34,334 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-16 00:05:38] 2026-01-15 23:00:34,334 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-16 00:05:38] 2026-01-15 23:00:34,334 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-16 00:05:38] 2026-01-15 23:00:34,334 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-16 00:05:38] 2026-01-15 23:00:34,335 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-16 00:05:38] 2026-01-15 23:00:34,335 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-16 00:05:38] 2026-01-15 23:00:34,335 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-16 00:05:38] 2026-01-15 23:00:34,335 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-16 00:05:38] 2026-01-15 23:00:34,335 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-16 00:05:38] 2026-01-15 23:00:34,335 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-16 00:05:38] 2026-01-15 23:00:34,335 | INFO     | job 6970568846 has completed (purged errors)
[2026-01-16 00:05:38] 2026-01-15 23:00:34,335 | INFO     | overall cleanup function is called
[2026-01-16 00:05:38] 2026-01-15 23:00:35,346 | INFO     | --- collectZombieJob: --- 10, [2696846]
[2026-01-16 00:05:38] 2026-01-15 23:00:35,346 | INFO     | zombie collector waiting for pid 2696846
[2026-01-16 00:05:38] 2026-01-15 23:00:35,346 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-16 00:05:38] 2026-01-15 23:00:35,346 | INFO     | collected zombie processes
[2026-01-16 00:05:38] 2026-01-15 23:00:35,346 | INFO     | will attempt to kill all subprocesses of pid=2696846
[2026-01-16 00:05:38] 2026-01-15 23:00:35,847 | INFO     | process IDs to be killed: [2696846] (in reverse order)
[2026-01-16 00:05:38] 2026-01-15 23:00:36,094 | WARNING  | found no corresponding commands to process id(s)
[2026-01-16 00:05:38] 2026-01-15 23:00:36,094 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-16 00:05:38] 2026-01-15 23:00:36,110 | INFO     | did not find any defunct processes belonging to 2696846
[2026-01-16 00:05:38] 2026-01-15 23:00:36,125 | INFO     | did not find any defunct processes belonging to 2696846
[2026-01-16 00:05:38] 2026-01-15 23:00:36,126 | INFO     | ready for new job
[2026-01-16 00:05:38] 2026-01-15 23:00:36,126 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-16 00:05:38] 2026-01-15 23:00:36,128 | INFO     | ***************************************
[2026-01-16 00:05:38] 2026-01-15 23:00:36,128 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-16 00:05:38] 2026-01-15 23:00:36,128 | INFO     | ***************************************
[2026-01-16 00:05:38] 2026-01-15 23:00:36,128 | INFO     | 
[2026-01-16 00:05:38] 2026-01-15 23:00:36,135 | INFO     | architecture information:
[2026-01-16 00:05:38] 2026-01-15 23:00:36,135 | INFO     | executing command: cat /etc/os-release
[2026-01-16 00:05:38] 2026-01-15 23:00:36,206 | INFO     | cat /etc/os-release:
[2026-01-16 00:05:38] NAME="CentOS Linux"
[2026-01-16 00:05:38] VERSION="7 (Core)"
[2026-01-16 00:05:38] ID="centos"
[2026-01-16 00:05:38] ID_LIKE="rhel fedora"
[2026-01-16 00:05:38] VERSION_ID="7"
[2026-01-16 00:05:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-16 00:05:38] ANSI_COLOR="0;31"
[2026-01-16 00:05:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-16 00:05:38] HOME_URL="https://www.centos.org/"
[2026-01-16 00:05:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-16 00:05:38] 
[2026-01-16 00:05:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-16 00:05:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-16 00:05:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-16 00:05:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-16 00:05:38] 
[2026-01-16 00:05:38] 2026-01-15 23:00:36,206 | INFO     | ***************************************
[2026-01-16 00:05:38] 2026-01-15 23:00:36,710 | INFO     | executing command: df -mP /scratch/.boinc/slots/7
[2026-01-16 00:05:38] 2026-01-15 23:00:36,873 | INFO     | sufficient remaining disk space (1520412131328 B)
[2026-01-16 00:05:38] 2026-01-15 23:00:36,873 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-16 00:05:38] 2026-01-15 23:00:36,873 | INFO     | current server update state: UPDATING_FINAL
[2026-01-16 00:05:38] 2026-01-15 23:00:36,873 | INFO     | update_server=False
[2026-01-16 00:05:38] 2026-01-15 23:00:36,873 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-16 00:05:38] 2026-01-15 23:00:36,874 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-16 00:05:38] 2026-01-15 23:00:36,945 | INFO     | all data control threads have been joined
[2026-01-16 00:05:38] 2026-01-15 23:00:36,987 | INFO     | all job control threads have been joined
[2026-01-16 00:05:38] 2026-01-15 23:00:37,029 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-16 00:05:38] 2026-01-15 23:00:37,029 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-16 00:05:38] 2026-01-15 23:00:37,029 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-16 00:05:38] 2026-01-15 23:00:37,029 | INFO     | will abort loop
[2026-01-16 00:05:38] 2026-01-15 23:00:37,301 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-16 00:05:38] 2026-01-15 23:00:37,802 | INFO     | all payload control threads have been joined
[2026-01-16 00:05:38] 2026-01-15 23:00:37,879 | INFO     | [job] retrieve thread has finished
[2026-01-16 00:05:38] 2026-01-15 23:00:37,951 | INFO     | [data] control thread has finished
[2026-01-16 00:05:38] 2026-01-15 23:00:37,993 | INFO     | [job] control thread has finished
[2026-01-16 00:05:38] 2026-01-15 23:00:38,035 | INFO     | [job] job monitor thread has finished
[2026-01-16 00:05:38] 2026-01-15 23:00:38,058 | INFO     | [job] validate thread has finished
[2026-01-16 00:05:38] 2026-01-15 23:00:38,221 | INFO     | [payload] execute_payloads thread has finished
[2026-01-16 00:05:38] 2026-01-15 23:00:38,398 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-16 00:05:38] 2026-01-15 23:00:38,504 | INFO     | [job] create_data_payload thread has finished
[2026-01-16 00:05:38] 2026-01-15 23:00:38,703 | INFO     | [payload] validate_post thread has finished
[2026-01-16 00:05:38] 2026-01-15 23:00:38,778 | INFO     | [data] copytool_in thread has finished
[2026-01-16 00:05:38] 2026-01-15 23:00:38,808 | INFO     | [payload] control thread has finished
[2026-01-16 00:05:38] 2026-01-15 23:00:38,930 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-16 00:05:38] 2026-01-15 23:00:39,022 | INFO     | [payload] failed_post thread has finished
[2026-01-16 00:05:38] 2026-01-15 23:00:39,045 | INFO     | [payload] validate_pre thread has finished
[2026-01-16 00:05:38] 2026-01-15 23:00:39,308 | INFO     | [data] copytool_out thread has finished
[2026-01-16 00:05:38] 2026-01-15 23:00:39,935 | INFO     | [job] queue monitor thread has finished
[2026-01-16 00:05:38] 2026-01-15 23:00:40,882 | INFO     | [data] queue_monitor thread has finished
[2026-01-16 00:05:38] 2026-01-15 23:01:07,514 | INFO     | PID=2640744 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-16 00:05:38] 2026-01-15 23:01:07,514 | INFO     | .. there are 19 such processes running
[2026-01-16 00:05:38] 2026-01-15 23:01:07,515 | INFO     | found 0 job(s) in 20 queues
[2026-01-16 00:05:38] 2026-01-15 23:01:07,515 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-16 00:05:38] 2026-01-15 23:01:07,515 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-16 00:05:38] 2026-01-15 23:01:30,861 | INFO     | [monitor] cgroup control has ended
[2026-01-16 00:05:38] 2026-01-15 23:01:31,695 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139913814841152)>', '<ExcThread(monitor, started 139913542473472)>']
[2026-01-16 00:05:38] 2026-01-15 23:01:32,651 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-16 00:05:38] 2026-01-15 23:01:32,651 | INFO     | [monitor] control thread has ended
[2026-01-16 00:05:38] 2026-01-15 23:01:36,721 | INFO     | all workflow threads have been joined
[2026-01-16 00:05:38] 2026-01-15 23:01:36,723 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-16 00:05:38] 2026-01-15 23:01:36,723 | INFO     | traces error code: 0
[2026-01-16 00:05:38] 2026-01-15 23:01:36,724 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-16 00:05:38] 2026-01-15 23:01:36,884 [wrapper] ==== pilot stdout END ====
[2026-01-16 00:05:38] 2026-01-15 23:01:36,891 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-16 00:05:38] 2026-01-15 23:01:36,898 [wrapper] pilotpid: 2640744
[2026-01-16 00:05:38] 2026-01-15 23:01:36,904 [wrapper] Pilot exit status: 0
[2026-01-16 00:05:38] 2026-01-15 23:01:36,941 [wrapper] pandaids: 6970568846
[2026-01-16 00:05:38] 2026-01-15 23:01:37,051 [wrapper] cleanup supervisor_pilot 2789086 2640745
[2026-01-16 00:05:38] 2026-01-15 23:01:37,056 [wrapper] Test setup, not cleaning
[2026-01-16 00:05:38] 2026-01-15 23:01:37,061 [wrapper] apfmon messages muted
[2026-01-16 00:05:38] 2026-01-15 23:01:37,070 [wrapper] ==== wrapper stdout END ====
[2026-01-16 00:05:38] 2026-01-15 23:01:37,075 [wrapper] ==== wrapper stderr END ====
[2026-01-16 00:05:38]  *** Error codes and diagnostics ***
[2026-01-16 00:05:38]     "exeErrorCode": 0,
[2026-01-16 00:05:38]     "exeErrorDiag": "",
[2026-01-16 00:05:38]     "pilotErrorCode": 0,
[2026-01-16 00:05:38]     "pilotErrorDiag": "",
[2026-01-16 00:05:38]  *** Listing of results directory ***
[2026-01-16 00:05:38] total 739860
[2026-01-16 00:05:38] -rw-r--r-- 1 boinc boinc    579449 Jan 15 09:34 pilot3.tar.gz
[2026-01-16 00:05:38] -rwx------ 1 boinc boinc     36322 Jan 15 09:36 runpilot2-wrapper.sh
[2026-01-16 00:05:38] -rw-r--r-- 1 boinc boinc      5112 Jan 15 09:40 queuedata.json
[2026-01-16 00:05:38] -rw-r--r-- 1 boinc boinc       100 Jan 15 22:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-16 00:05:38] -rwxr-xr-x 1 boinc boinc      7986 Jan 15 22:54 run_atlas
[2026-01-16 00:05:38] -rw-r--r-- 1 boinc boinc       105 Jan 15 22:54 job.xml
[2026-01-16 00:05:38] -rw-r--r-- 2 boinc boinc 595471143 Jan 15 22:54 EVNT.32794306._001981.pool.root.1
[2026-01-16 00:05:38] -rw-r--r-- 1 boinc boinc      6675 Jan 15 22:54 init_data.xml
[2026-01-16 00:05:38] drwxrwx--x 2 boinc boinc      4096 Jan 15 22:54 shared
[2026-01-16 00:05:38] -rw-r--r-- 2 boinc boinc    592406 Jan 15 22:54 input.tar.gz
[2026-01-16 00:05:38] -rw-r--r-- 2 boinc boinc     15847 Jan 15 22:54 start_atlas.sh
[2026-01-16 00:05:38] -rw-r--r-- 1 boinc boinc         0 Jan 15 22:54 boinc_lockfile
[2026-01-16 00:05:38] -rw-r--r-- 1 boinc boinc      2509 Jan 15 22:54 pandaJob.out
[2026-01-16 00:05:38] -rw------- 1 boinc boinc   1004083 Jan 15 22:55 agis_schedconf.cvmfs.json
[2026-01-16 00:05:38] -rw------- 1 boinc boinc   1516246 Jan 15 22:55 agis_ddmendpoints.agis.ALL.json
[2026-01-16 00:05:38] drwx------ 5 boinc boinc      4096 Jan 15 22:55 pilot3
[2026-01-16 00:05:38] -rw------- 1 boinc boinc 156301881 Jan 15 23:59 HITS.48215263._050999.pool.root.1
[2026-01-16 00:05:38] -rw-r--r-- 1 boinc boinc       529 Jan 15 23:59 boinc_task_state.xml
[2026-01-16 00:05:38] -rw------- 1 boinc boinc      1026 Jan 16 00:00 memory_monitor_summary.json
[2026-01-16 00:05:38] -rw------- 1 boinc boinc    386654 Jan 16 00:00 log.48215263._050999.job.log.tgz.1
[2026-01-16 00:05:38] -rw------- 1 boinc boinc        95 Jan 16 00:00 pilot_heartbeat.json
[2026-01-16 00:05:38] -rw------- 1 boinc boinc      7778 Jan 16 00:00 heartbeat.json
[2026-01-16 00:05:38] -rw------- 1 boinc boinc      5013 Jan 16 00:01 pilotlog.txt
[2026-01-16 00:05:38] -rw------- 1 boinc boinc    569929 Jan 16 00:01 log.48215263._050999.job.log.1
[2026-01-16 00:05:38] -rw------- 1 boinc boinc       357 Jan 16 00:01 output.list
[2026-01-16 00:05:38] -rw-r--r-- 1 boinc boinc       620 Jan 16 00:01 runtime_log
[2026-01-16 00:05:38] -rw------- 1 boinc boinc    972800 Jan 16 00:01 result.tar.gz
[2026-01-16 00:05:38] -rw-r--r-- 1 boinc boinc      8880 Jan 16 00:01 runtime_log.err
[2026-01-16 00:05:38] -rw------- 1 boinc boinc       663 Jan 16 00:01 InjMDmC1X08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmWYoKDmt5rVqn.diag
[2026-01-16 00:05:38] -rw-r--r-- 1 boinc boinc        26 Jan 16 00:05 wrapper_checkpoint.txt
[2026-01-16 00:05:38] -rw-r--r-- 1 boinc boinc      8192 Jan 16 00:05 boinc_mmap_file
[2026-01-16 00:05:38] -rw-r--r-- 1 boinc boinc     22395 Jan 16 00:05 stderr.txt
[2026-01-16 00:05:38] HITS file was successfully produced:
[2026-01-16 00:05:38] -rw------- 1 boinc boinc 156301881 Jan 15 23:59 shared/HITS.pool.root.1
[2026-01-16 00:05:38]  *** Contents of shared directory: ***
[2026-01-16 00:05:38] total 735712
[2026-01-16 00:05:38] -rw-r--r-- 2 boinc boinc 595471143 Jan 15 22:54 ATLAS.root_0
[2026-01-16 00:05:38] -rw-r--r-- 2 boinc boinc    592406 Jan 15 22:54 input.tar.gz
[2026-01-16 00:05:38] -rw-r--r-- 2 boinc boinc     15847 Jan 15 22:54 start_atlas.sh
[2026-01-16 00:05:38] -rw------- 1 boinc boinc 156301881 Jan 15 23:59 HITS.pool.root.1
[2026-01-16 00:05:38] -rw------- 1 boinc boinc    972800 Jan 16 00:01 result.tar.gz
00:05:40 (2616214): run_atlas exited; CPU time 26481.553236
00:05:40 (2616214): called boinc_finish(0)

</stderr_txt>
]]>

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