Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:43:45 (964213): wrapper (7.7.26015): starting
05:43:45 (964213): wrapper: running run_atlas (--nthreads 3)
[2026-01-16 05:43:45] Arguments: --nthreads 3
[2026-01-16 05:43:45] Threads: 3
[2026-01-16 05:43:45] Checking for CVMFS
[2026-01-16 05:43:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-16 05:43:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-16 05:43:45] Running cvmfs_config stat atlas.cern.ch
[2026-01-16 05:43:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-16 05:43:46] 2.13.3.0 866440 312 53336 155184 3 57 15218022 15728640 0 130560 0 308346 99.993 8377 11 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-01-16 05:43:46] CVMFS is ok
[2026-01-16 05:43:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-16 05:43:46] Checking for apptainer binary...
[2026-01-16 05:43:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-16 05:43:46] Running /usr/bin/apptainer --version
[2026-01-16 05:43:46] apptainer version 1.4.5-2.el9
[2026-01-16 05:43:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-16 05:43:46] testio003
[2026-01-16 05:43:46] apptainer works
[2026-01-16 05:43:46] Set ATHENA_PROC_NUMBER=3
[2026-01-16 05:43:46] Set ATHENA_CORE_NUMBER=3
[2026-01-16 05:43:46] Starting ATLAS job with PandaID=6971045337
[2026-01-16 05:43:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-16 07:01:12]  *** The last 200 lines of the pilot log: ***
[2026-01-16 07:01:12] 2026-01-15 21:59:17,844 | INFO     | time since job start (4520s) is within the limit (349056.0s)
[2026-01-16 07:01:12] 2026-01-15 21:59:19,849 | INFO     | time since job start (4522s) is within the limit (349056.0s)
[2026-01-16 07:01:12] 2026-01-15 21:59:21,854 | INFO     | time since job start (4524s) is within the limit (349056.0s)
[2026-01-16 07:01:12] 2026-01-15 21:59:23,859 | INFO     | time since job start (4526s) is within the limit (349056.0s)
[2026-01-16 07:01:12] 2026-01-15 21:59:25,864 | INFO     | time since job start (4528s) is within the limit (349056.0s)
[2026-01-16 07:01:12] 2026-01-15 21:59:27,869 | INFO     | time since job start (4530s) is within the limit (349056.0s)
[2026-01-16 07:01:12] 2026-01-15 21:59:29,875 | INFO     | time since job start (4532s) is within the limit (349056.0s)
[2026-01-16 07:01:12] 2026-01-15 21:59:30,920 | INFO     | PID=967886 has CPU usage=0.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-16 07:01:12] 2026-01-15 21:59:31,921 | INFO     | time since job start (4534s) is within the limit (349056.0s)
[2026-01-16 07:01:12] 2026-01-15 21:59:33,926 | INFO     | time since job start (4536s) is within the limit (349056.0s)
[2026-01-16 07:01:12] 2026-01-15 21:59:35,931 | INFO     | time since job start (4538s) is within the limit (349056.0s)
[2026-01-16 07:01:12] 2026-01-15 21:59:37,936 | INFO     | time since job start (4540s) is within the limit (349056.0s)
[2026-01-16 07:01:12] 2026-01-15 21:59:39,941 | INFO     | time since job start (4542s) is within the limit (349056.0s)
[2026-01-16 07:01:12] 2026-01-15 21:59:41,946 | INFO     | time since job start (4544s) is within the limit (349056.0s)
[2026-01-16 07:01:12] 2026-01-15 21:59:43,951 | INFO     | time since job start (4546s) is within the limit (349056.0s)
[2026-01-16 07:01:12] 2026-01-15 21:59:45,956 | INFO     | time since job start (4548s) is within the limit (349056.0s)
[2026-01-16 07:01:12] 2026-01-15 21:59:47,959 | INFO     | time since job start (4550s) is within the limit (349056.0s)
[2026-01-16 07:01:12] 2026-01-15 21:59:49,964 | INFO     | time since job start (4552s) is within the limit (349056.0s)
[2026-01-16 07:01:12] 2026-01-15 21:59:51,969 | INFO     | time since job start (4554s) is within the limit (349056.0s)
[2026-01-16 07:01:12] 2026-01-15 21:59:53,014 | INFO     | PID=967886 has CPU usage=0.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-16 07:01:12] 2026-01-15 21:59:54,014 | INFO     | time since job start (4557s) is within the limit (349056.0s)
[2026-01-16 07:01:12] 2026-01-15 21:59:56,019 | INFO     | time since job start (4559s) is within the limit (349056.0s)
[2026-01-16 07:01:12] 2026-01-15 21:59:58,024 | INFO     | time since job start (4561s) is within the limit (349056.0s)
[2026-01-16 07:01:12] 2026-01-15 22:00:00,029 | INFO     | time since job start (4563s) is within the limit (349056.0s)
[2026-01-16 07:01:12] 2026-01-15 22:00:02,034 | INFO     | time since job start (4565s) is within the limit (349056.0s)
[2026-01-16 07:01:12] 2026-01-15 22:00:04,039 | INFO     | time since job start (4567s) is within the limit (349056.0s)
[2026-01-16 07:01:12] 2026-01-15 22:00:06,044 | INFO     | time since job start (4569s) is within the limit (349056.0s)
[2026-01-16 07:01:12] 2026-01-15 22:00:08,048 | INFO     | time since job start (4571s) is within the limit (349056.0s)
[2026-01-16 07:01:12] 2026-01-15 22:00:10,050 | INFO     | time since job start (4573s) is within the limit (349056.0s)
[2026-01-16 07:01:12] 2026-01-15 22:00:10,551 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-16 07:01:12] 2026-01-15 22:00:10,554 | INFO     | found 4 cores (4 cores per socket, 1 socket) , CPU MHz: 3663.90125
[2026-01-16 07:01:12] 2026-01-15 22:00:10,556 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6971045337/memory_monitor_summary.json (trf name=prmon)
[2026-01-16 07:01:12] 2026-01-15 22:00:10,556 | INFO     | extracted standard info from prmon json
[2026-01-16 07:01:12] 2026-01-15 22:00:10,556 | INFO     | extracted standard memory fields from prmon json
[2026-01-16 07:01:12] 2026-01-15 22:00:10,556 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-16 07:01:12] 2026-01-15 22:00:10,556 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-16 07:01:12] 2026-01-15 22:00:10,557 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-16 07:01:12] 2026-01-15 22:00:10,557 | INFO     | fitting pss+swap vs Time
[2026-01-16 07:01:12] 2026-01-15 22:00:10,558 | INFO     | sum of square deviations: 93240818.0
[2026-01-16 07:01:12] 2026-01-15 22:00:10,558 | INFO     | sum of deviations: -13027989905.000002
[2026-01-16 07:01:12] 2026-01-15 22:00:10,558 | INFO     | mean x: 1768512178.0
[2026-01-16 07:01:12] 2026-01-15 22:00:10,558 | INFO     | mean y: 2532585.686567164
[2026-01-16 07:01:12] 2026-01-15 22:00:10,558 | INFO     | intersect: 247106314985.51028
[2026-01-16 07:01:12] 2026-01-15 22:00:10,558 | INFO     | chi2: 0.129814884946483
[2026-01-16 07:01:12] 2026-01-15 22:00:10,558 | INFO     | current memory leak: -139.72 B/s (using 67 data points, chi2=0.13)
[2026-01-16 07:01:12] 2026-01-15 22:00:10,559 | INFO     | could have reported an average CPU frequency of 3634 MHz (6 samples)
[2026-01-16 07:01:12] 2026-01-15 22:00:10,559 | INFO     | ..............................
[2026-01-16 07:01:12] 2026-01-15 22:00:10,559 | INFO     | . Timing measurements:
[2026-01-16 07:01:12] 2026-01-15 22:00:10,559 | INFO     | . get job = 0 s
[2026-01-16 07:01:12] 2026-01-15 22:00:10,559 | INFO     | . initial setup = 6 s
[2026-01-16 07:01:12] 2026-01-15 22:00:10,559 | INFO     | . payload setup = 4 s
[2026-01-16 07:01:12] 2026-01-15 22:00:10,559 | INFO     | . stage-in = 0 s
[2026-01-16 07:01:12] 2026-01-15 22:00:10,559 | INFO     | . payload execution = 4466 s
[2026-01-16 07:01:12] 2026-01-15 22:00:10,559 | INFO     | . stage-out = 0 s
[2026-01-16 07:01:12] 2026-01-15 22:00:10,559 | INFO     | . log creation = 0 s
[2026-01-16 07:01:12] 2026-01-15 22:00:10,559 | INFO     | ..............................
[2026-01-16 07:01:12] 2026-01-15 22:00:10,597 | INFO     | 
[2026-01-16 07:01:12] 2026-01-15 22:00:10,597 | INFO     | job summary report
[2026-01-16 07:01:12] 2026-01-15 22:00:10,597 | INFO     | --------------------------------------------------
[2026-01-16 07:01:12] 2026-01-15 22:00:10,597 | INFO     | PanDA job id: 6971045337
[2026-01-16 07:01:12] 2026-01-15 22:00:10,597 | INFO     | task id: 48215263
[2026-01-16 07:01:12] 2026-01-15 22:00:10,597 | INFO     | errors: (none)
[2026-01-16 07:01:12] 2026-01-15 22:00:10,597 | INFO     | sufficient remaining disk space (48458891264 B)
[2026-01-16 07:01:12] 2026-01-15 22:00:10,598 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-16 07:01:12] 2026-01-15 22:00:10,598 | INFO     | work directory size check will use 4404019200 B as a max limit (20% grace limit added, divider=1)
[2026-01-16 07:01:12] 2026-01-15 22:00:10,598 | INFO     | pilot state: finished 
[2026-01-16 07:01:12] 2026-01-15 22:00:10,598 | INFO     | transexitcode: 0
[2026-01-16 07:01:12] 2026-01-15 22:00:10,598 | INFO     | exeerrorcode: 0
[2026-01-16 07:01:12] 2026-01-15 22:00:10,598 | INFO     | exeerrordiag: 
[2026-01-16 07:01:12] 2026-01-15 22:00:10,599 | INFO     | exitcode: 0
[2026-01-16 07:01:12] 2026-01-15 22:00:10,599 | INFO     | exitmsg: OK
[2026-01-16 07:01:12] 2026-01-15 22:00:10,599 | INFO     | cpuconsumptiontime: 12580 s
[2026-01-16 07:01:12] 2026-01-15 22:00:10,599 | INFO     | nevents: 400
[2026-01-16 07:01:12] 2026-01-15 22:00:10,599 | INFO     | neventsw: 0
[2026-01-16 07:01:12] 2026-01-15 22:00:10,599 | INFO     | pid: 974434
[2026-01-16 07:01:12] 2026-01-15 22:00:10,599 | INFO     | pgrp: 974434
[2026-01-16 07:01:12] 2026-01-15 22:00:10,599 | INFO     | corecount: 3
[2026-01-16 07:01:12] 2026-01-15 22:00:10,599 | INFO     | event service: False
[2026-01-16 07:01:12] 2026-01-15 22:00:10,599 | INFO     | sizes: {0: 2283902, 3: 2284164, 10: 2284192, 4475: 2310331, 4476: 2319329, 4478: 2319385, 4559: 2319707}
[2026-01-16 07:01:12] 2026-01-15 22:00:10,599 | INFO     | --------------------------------------------------
[2026-01-16 07:01:12] 2026-01-15 22:00:10,599 | INFO     | 
[2026-01-16 07:01:12] 2026-01-15 22:00:10,599 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2026-01-16 07:01:12] 2026-01-15 22:00:10,602 | INFO     | size of work directory /var/lib/boinc/slots/2/PanDA_Pilot-6971045337: 2944551 B (within 4404019200 B limit)
[2026-01-16 07:01:12] 2026-01-15 22:00:10,602 | INFO     | pfn file=/var/lib/boinc/slots/2/PanDA_Pilot-6971045337/HITS.48215263._051847.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-16 07:01:12] 2026-01-15 22:00:10,602 | INFO     | total size of present files: 0 B (workdir size: 2944551 B)
[2026-01-16 07:01:12] 2026-01-15 22:00:10,602 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/2/PanDA_Pilot-6971045337/HITS.48215263._051847.pool.root.1 since it does not exist
[2026-01-16 07:01:12] 2026-01-15 22:00:10,612 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-16 07:01:12] 2026-01-15 22:00:10,612 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-16 07:01:12] 2026-01-15 22:00:10,612 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-16 07:01:12] 2026-01-15 22:00:10,612 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-16 07:01:12] 2026-01-15 22:00:10,612 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-16 07:01:12] 2026-01-15 22:00:10,612 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-16 07:01:12] 2026-01-15 22:00:10,612 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-16 07:01:12] 2026-01-15 22:00:10,612 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-16 07:01:12] 2026-01-15 22:00:10,612 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-16 07:01:12] 2026-01-15 22:00:10,612 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-16 07:01:12] 2026-01-15 22:00:10,612 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-16 07:01:12] 2026-01-15 22:00:10,612 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-16 07:01:12] 2026-01-15 22:00:10,613 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-16 07:01:12] 2026-01-15 22:00:10,613 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-16 07:01:12] 2026-01-15 22:00:10,613 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-16 07:01:12] 2026-01-15 22:00:10,613 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-16 07:01:12] 2026-01-15 22:00:10,613 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-16 07:01:12] 2026-01-15 22:00:10,613 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-16 07:01:12] 2026-01-15 22:00:10,613 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-16 07:01:12] 2026-01-15 22:00:10,613 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-16 07:01:12] 2026-01-15 22:00:10,613 | INFO     | job 6971045337 has completed (purged errors)
[2026-01-16 07:01:12] 2026-01-15 22:00:10,613 | INFO     | overall cleanup function is called
[2026-01-16 07:01:12] 2026-01-15 22:00:10,638 | INFO     | number of running child processes to parent process 974434: 1
[2026-01-16 07:01:12] 2026-01-15 22:00:10,638 | INFO     | maximum number of monitored processes: 6
[2026-01-16 07:01:12] 2026-01-15 22:00:10,638 | INFO     | aborting job monitoring since job object (job id=6971045337) has expired
[2026-01-16 07:01:12] 2026-01-15 22:00:11,620 | INFO     | --- collectZombieJob: --- 10, [974434]
[2026-01-16 07:01:12] 2026-01-15 22:00:11,620 | INFO     | zombie collector waiting for pid 974434
[2026-01-16 07:01:12] 2026-01-15 22:00:11,620 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-16 07:01:12] 2026-01-15 22:00:11,620 | INFO     | collected zombie processes
[2026-01-16 07:01:12] 2026-01-15 22:00:11,620 | INFO     | will attempt to kill all subprocesses of pid=974434
[2026-01-16 07:01:12] 2026-01-15 22:00:11,650 | INFO     | process IDs to be killed: [974434] (in reverse order)
[2026-01-16 07:01:12] 2026-01-15 22:00:11,676 | WARNING  | found no corresponding commands to process id(s)
[2026-01-16 07:01:12] 2026-01-15 22:00:11,676 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-16 07:01:12] 2026-01-15 22:00:11,677 | INFO     | did not find any defunct processes belonging to 974434
[2026-01-16 07:01:12] 2026-01-15 22:00:11,678 | INFO     | did not find any defunct processes belonging to 974434
[2026-01-16 07:01:12] 2026-01-15 22:00:11,678 | INFO     | ready for new job
[2026-01-16 07:01:12] 2026-01-15 22:00:11,678 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-16 07:01:12] 2026-01-15 22:00:11,679 | INFO     | ***************************************
[2026-01-16 07:01:12] 2026-01-15 22:00:11,679 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-16 07:01:12] 2026-01-15 22:00:11,679 | INFO     | ***************************************
[2026-01-16 07:01:12] 2026-01-15 22:00:11,679 | INFO     | 
[2026-01-16 07:01:12] 2026-01-15 22:00:11,680 | INFO     | architecture information:
[2026-01-16 07:01:12] 2026-01-15 22:00:11,680 | INFO     | executing command: cat /etc/os-release
[2026-01-16 07:01:12] 2026-01-15 22:00:11,688 | INFO     | cat /etc/os-release:
[2026-01-16 07:01:12] NAME="CentOS Linux"
[2026-01-16 07:01:12] VERSION="7 (Core)"
[2026-01-16 07:01:12] ID="centos"
[2026-01-16 07:01:12] ID_LIKE="rhel fedora"
[2026-01-16 07:01:12] VERSION_ID="7"
[2026-01-16 07:01:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-16 07:01:12] ANSI_COLOR="0;31"
[2026-01-16 07:01:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-16 07:01:12] HOME_URL="https://www.centos.org/"
[2026-01-16 07:01:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-16 07:01:12] 
[2026-01-16 07:01:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-16 07:01:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-16 07:01:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-16 07:01:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-16 07:01:12] 
[2026-01-16 07:01:12] 2026-01-15 22:00:11,688 | INFO     | ***************************************
[2026-01-16 07:01:12] 2026-01-15 22:00:12,191 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2026-01-16 07:01:12] 2026-01-15 22:00:12,199 | INFO     | sufficient remaining disk space (48463085568 B)
[2026-01-16 07:01:12] 2026-01-15 22:00:12,199 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-16 07:01:12] 2026-01-15 22:00:12,199 | INFO     | current server update state: UPDATING_FINAL
[2026-01-16 07:01:12] 2026-01-15 22:00:12,199 | INFO     | update_server=False
[2026-01-16 07:01:12] 2026-01-15 22:00:12,199 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-16 07:01:12] 2026-01-15 22:00:12,199 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-16 07:01:12] 2026-01-15 22:00:12,200 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-16 07:01:12] 2026-01-15 22:00:12,200 | INFO     | aborting loop
[2026-01-16 07:01:12] 2026-01-15 22:00:12,209 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-16 07:01:12] 2026-01-15 22:00:13,060 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-16 07:01:12] 2026-01-15 22:00:13,201 | INFO     | all data control threads have been joined
[2026-01-16 07:01:12] 2026-01-15 22:00:13,201 | INFO     | [job] job monitor thread has finished
[2026-01-16 07:01:12] 2026-01-15 22:00:13,204 | INFO     | [job] retrieve thread has finished
[2026-01-16 07:01:12] 2026-01-15 22:00:13,205 | INFO     | [job] queue monitor thread has finished
[2026-01-16 07:01:12] 2026-01-15 22:00:13,241 | INFO     | [payload] failed_post thread has finished
[2026-01-16 07:01:12] 2026-01-15 22:00:13,298 | INFO     | all payload control threads have been joined
[2026-01-16 07:01:12] 2026-01-15 22:00:13,689 | INFO     | all job control threads have been joined
[2026-01-16 07:01:12] 2026-01-15 22:00:14,025 | INFO     | [payload] validate_post thread has finished
[2026-01-16 07:01:12] 2026-01-15 22:00:14,206 | INFO     | [data] control thread has finished
[2026-01-16 07:01:12] 2026-01-15 22:00:14,303 | INFO     | [payload] control thread has finished
[2026-01-16 07:01:12] 2026-01-15 22:00:14,494 | INFO     | [data] copytool_in thread has finished
[2026-01-16 07:01:12] 2026-01-15 22:00:14,494 | INFO     | [job] create_data_payload thread has finished
[2026-01-16 07:01:12] 2026-01-15 22:00:14,495 | INFO     | [job] validate thread has finished
[2026-01-16 07:01:12] 2026-01-15 22:00:14,505 | INFO     | [payload] validate_pre thread has finished
[2026-01-16 07:01:12] 2026-01-15 22:00:14,572 | INFO     | [payload] execute_payloads thread has finished
[2026-01-16 07:01:12] 2026-01-15 22:00:14,694 | INFO     | [job] control thread has finished
[2026-01-16 07:01:12] 2026-01-15 22:00:15,065 | INFO     | [data] copytool_out thread has finished
[2026-01-16 07:01:12] 2026-01-15 22:00:16,214 | INFO     | [data] queue_monitor thread has finished
[2026-01-16 07:01:12] 2026-01-15 22:00:23,153 | INFO     | job.realtimelogging is not enabled
[2026-01-16 07:01:12] 2026-01-15 22:00:24,158 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-16 07:01:12] 2026-01-15 22:00:43,151 | INFO     | PID=967886 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-16 07:01:12] 2026-01-15 22:00:43,152 | INFO     | found 0 job(s) in 20 queues
[2026-01-16 07:01:12] 2026-01-15 22:00:43,152 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-16 07:01:12] 2026-01-15 22:00:43,152 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-16 07:01:12] 2026-01-15 22:01:06,863 | INFO     | [monitor] cgroup control has ended
[2026-01-16 07:01:12] 2026-01-15 22:01:07,548 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140139489220416)>', '<ExcThread(monitor, started 140139103758080)>']
[2026-01-16 07:01:12] 2026-01-15 22:01:08,275 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-16 07:01:12] 2026-01-15 22:01:08,275 | INFO     | [monitor] control thread has ended
[2026-01-16 07:01:12] 2026-01-15 22:01:12,573 | INFO     | all workflow threads have been joined
[2026-01-16 07:01:12] 2026-01-15 22:01:12,573 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-16 07:01:12] 2026-01-15 22:01:12,574 | INFO     | traces error code: 0
[2026-01-16 07:01:12] 2026-01-15 22:01:12,574 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-16 07:01:12] 2026-01-15 22:01:12,633 [wrapper] ==== pilot stdout END ====
[2026-01-16 07:01:12] 2026-01-15 22:01:12,635 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-16 07:01:12] 2026-01-15 22:01:12,636 [wrapper] pilotpid: 967886
[2026-01-16 07:01:12] 2026-01-15 22:01:12,638 [wrapper] Pilot exit status: 0
[2026-01-16 07:01:12] 2026-01-15 22:01:12,643 [wrapper] pandaids: 6971045337
[2026-01-16 07:01:12] 2026-01-15 22:01:12,656 [wrapper] cleanup supervisor_pilot  986080 967887
[2026-01-16 07:01:12] 2026-01-15 22:01:12,658 [wrapper] Test setup, not cleaning
[2026-01-16 07:01:12] 2026-01-15 22:01:12,660 [wrapper] apfmon messages muted
[2026-01-16 07:01:12] 2026-01-15 22:01:12,662 [wrapper] ==== wrapper stdout END ====
[2026-01-16 07:01:12] 2026-01-15 22:01:12,663 [wrapper] ==== wrapper stderr END ====
[2026-01-16 07:01:12]  *** Error codes and diagnostics ***
[2026-01-16 07:01:12]     "exeErrorCode": 0,
[2026-01-16 07:01:12]     "exeErrorDiag": "",
[2026-01-16 07:01:12]     "pilotErrorCode": 0,
[2026-01-16 07:01:12]     "pilotErrorDiag": "",
[2026-01-16 07:01:12]  *** Listing of results directory ***
[2026-01-16 07:01:12] total 734340
[2026-01-16 07:01:12] -rw-r--r--. 1 boinc boinc    579449 Jan 15 17:34 pilot3.tar.gz
[2026-01-16 07:01:12] -rwx------. 1 boinc boinc     36322 Jan 15 17:36 runpilot2-wrapper.sh
[2026-01-16 07:01:12] -rw-r--r--. 1 boinc boinc      5112 Jan 15 17:40 queuedata.json
[2026-01-16 07:01:12] -rw-r--r--. 1 boinc boinc       100 Jan 16 05:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-16 07:01:12] -rwxr-xr-x. 1 boinc boinc      7986 Jan 16 05:43 run_atlas
[2026-01-16 07:01:12] -rw-r--r--. 1 boinc boinc       105 Jan 16 05:43 job.xml
[2026-01-16 07:01:12] -rw-r--r--. 2 boinc boinc     15847 Jan 16 05:43 start_atlas.sh
[2026-01-16 07:01:12] drwxrwx--x. 2 boinc boinc        68 Jan 16 05:43 shared
[2026-01-16 07:01:12] -rw-r--r--. 2 boinc boinc    592408 Jan 16 05:43 input.tar.gz
[2026-01-16 07:01:12] -rw-r--r--. 1 boinc boinc      9407 Jan 16 05:43 init_data.xml
[2026-01-16 07:01:12] -rw-r--r--. 2 boinc boinc 592654174 Jan 16 05:43 EVNT.32794306._001055.pool.root.1
[2026-01-16 07:01:12] -rw-r--r--. 1 boinc boinc         0 Jan 16 05:43 boinc_lockfile
[2026-01-16 07:01:12] -rw-r--r--. 1 boinc boinc      2509 Jan 16 05:43 pandaJob.out
[2026-01-16 07:01:12] -rw-------. 1 boinc boinc   1004075 Jan 16 05:43 agis_schedconf.cvmfs.json
[2026-01-16 07:01:12] -rw-------. 1 boinc boinc   1516246 Jan 16 05:43 agis_ddmendpoints.agis.ALL.json
[2026-01-16 07:01:12] drwx------. 5 boinc boinc      4096 Jan 16 05:43 pilot3
[2026-01-16 07:01:12] -rw-------. 1 boinc boinc 153559390 Jan 16 06:58 HITS.48215263._051847.pool.root.1
[2026-01-16 07:01:12] -rw-r--r--. 1 boinc boinc       530 Jan 16 06:58 boinc_task_state.xml
[2026-01-16 07:01:12] -rw-------. 1 boinc boinc      1013 Jan 16 06:58 memory_monitor_summary.json
[2026-01-16 07:01:12] -rw-------. 1 boinc boinc    258257 Jan 16 06:58 log.48215263._051847.job.log.tgz.1
[2026-01-16 07:01:12] -rw-------. 1 boinc boinc      7768 Jan 16 07:00 heartbeat.json
[2026-01-16 07:01:12] -rw-------. 1 boinc boinc        95 Jan 16 07:00 pilot_heartbeat.json
[2026-01-16 07:01:12] -rw-r--r--. 1 boinc boinc      8192 Jan 16 07:01 boinc_mmap_file
[2026-01-16 07:01:12] -rw-r--r--. 1 boinc boinc        27 Jan 16 07:01 wrapper_checkpoint.txt
[2026-01-16 07:01:12] -rw-------. 1 boinc boinc      4819 Jan 16 07:01 pilotlog.txt
[2026-01-16 07:01:12] -rw-------. 1 boinc boinc    658846 Jan 16 07:01 log.48215263._051847.job.log.1
[2026-01-16 07:01:12] -rw-------. 1 boinc boinc       357 Jan 16 07:01 output.list
[2026-01-16 07:01:12] -rw-r--r--. 1 boinc boinc       620 Jan 16 07:01 runtime_log
[2026-01-16 07:01:12] -rw-------. 1 boinc boinc    931840 Jan 16 07:01 result.tar.gz
[2026-01-16 07:01:12] -rw-r--r--. 1 boinc boinc      8775 Jan 16 07:01 runtime_log.err
[2026-01-16 07:01:12] -rw-------. 1 boinc boinc       642 Jan 16 07:01 bazLDmn1X08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmfouKDmqHREWn.diag
[2026-01-16 07:01:12] -rw-r--r--. 1 boinc boinc     22177 Jan 16 07:01 stderr.txt
[2026-01-16 07:01:12] HITS file was successfully produced:
[2026-01-16 07:01:12] -rw-------. 1 boinc boinc 153559390 Jan 16 06:58 shared/HITS.pool.root.1
[2026-01-16 07:01:12]  *** Contents of shared directory: ***
[2026-01-16 07:01:12] total 730236
[2026-01-16 07:01:12] -rw-r--r--. 2 boinc boinc     15847 Jan 16 05:43 start_atlas.sh
[2026-01-16 07:01:12] -rw-r--r--. 2 boinc boinc    592408 Jan 16 05:43 input.tar.gz
[2026-01-16 07:01:12] -rw-r--r--. 2 boinc boinc 592654174 Jan 16 05:43 ATLAS.root_0
[2026-01-16 07:01:12] -rw-------. 1 boinc boinc 153559390 Jan 16 06:58 HITS.pool.root.1
[2026-01-16 07:01:12] -rw-------. 1 boinc boinc    931840 Jan 16 07:01 result.tar.gz
07:01:14 (964213): run_atlas exited; CPU time 12585.953698
07:01:14 (964213): called boinc_finish(0)

</stderr_txt>
]]>

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