Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:12:57 (887381): wrapper (7.7.26015): starting
11:12:57 (887381): wrapper: running run_atlas (--nthreads 10)
[2026-01-15 11:12:57] Arguments: --nthreads 10
[2026-01-15 11:12:57] Threads: 10
[2026-01-15 11:12:57] Checking for CVMFS
[2026-01-15 11:12:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 11:12:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 11:12:57] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 11:12:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 11:12:58] 2.13.3.0 7385 102211 192376 155177 1 574 22872333 32503808 27628 16776704 0 1197903893 99.605 1254686565 49203 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-15 11:12:58] CVMFS is ok
[2026-01-15 11:12:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 11:12:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 11:12:58] Further information can be found at the LHC@home message board.
[2026-01-15 11:12:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 11:12:58] Checking for apptainer binary...
[2026-01-15 11:12:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 11:12:58] Running /usr/bin/apptainer --version
[2026-01-15 11:12:59] apptainer version 1.4.5-2.el9
[2026-01-15 11:12:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 11:13:00] c8-7-1.aglt2.org
[2026-01-15 11:13:00] apptainer works
[2026-01-15 11:13:00] Set ATHENA_PROC_NUMBER=10
[2026-01-15 11:13:00] Set ATHENA_CORE_NUMBER=10
[2026-01-15 11:13:00] Starting ATLAS job with PandaID=6970538437
[2026-01-15 11:13:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 12:11:04]  *** The last 200 lines of the pilot log: ***
[2026-01-15 12:11:04] 2026-01-15 17:09:48,870 | INFO     | adding to output.list: log.48215263._050523.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/52/85/log.48215263._050523.job.log.tg
[2026-01-15 12:11:04] 2026-01-15 17:09:48,870 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-15 12:11:04] 2026-01-15 17:09:48,872 | INFO     | summary of transferred files:
[2026-01-15 12:11:04] 2026-01-15 17:09:48,872 | INFO     |  -- lfn=log.48215263._050523.job.log.tgz.1, status_code=0, status=transferred
[2026-01-15 12:11:04] 2026-01-15 17:09:48,873 | INFO     | stage-out finished correctly
[2026-01-15 12:11:04] 2026-01-15 17:09:49,375 | INFO     | monitor loop #242: job 0:6970538437 is in state 'finished'
[2026-01-15 12:11:04] 2026-01-15 17:09:49,375 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:11:04] 2026-01-15 17:09:49,808 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-15 12:11:04] 2026-01-15 17:09:49,896 | INFO     | job 6970538437 has state=finished
[2026-01-15 12:11:04] 2026-01-15 17:09:49,896 | INFO     | preparing for final server update for job 6970538437 in state='finished'
[2026-01-15 12:11:04] 2026-01-15 17:09:49,950 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-01-15 12:11:04] 2026-01-15 17:09:49,951 | INFO     | this job has now completed (state=finished)
[2026-01-15 12:11:04] 2026-01-15 17:09:49,951 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-15 12:11:04] 2026-01-15 17:09:49,951 | INFO     | log transfer has been attempted: DONE
[2026-01-15 12:11:04] 2026-01-15 17:09:49,951 | INFO     | job 6970538437 has finished - writing final server update
[2026-01-15 12:11:04] 2026-01-15 17:09:49,951 | INFO     | total number of processed events: 400 (read)
[2026-01-15 12:11:04] 2026-01-15 17:09:49,965 | INFO     | executing command: lscpu
[2026-01-15 12:11:04] 2026-01-15 17:09:50,095 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-15 12:11:04] 2026-01-15 17:09:50,578 | INFO     | time since job start (3359s) is within the limit (349056.0s)
[2026-01-15 12:11:04] 2026-01-15 17:09:51,885 | INFO     | monitor loop #243: job 0:6970538437 is in state 'finished'
[2026-01-15 12:11:04] 2026-01-15 17:09:51,885 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:11:04] 2026-01-15 17:09:52,588 | INFO     | time since job start (3361s) is within the limit (349056.0s)
[2026-01-15 12:11:04] 2026-01-15 17:09:54,390 | INFO     | monitor loop #244: job 0:6970538437 is in state 'finished'
[2026-01-15 12:11:04] 2026-01-15 17:09:54,390 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:11:04] 2026-01-15 17:09:54,595 | INFO     | time since job start (3363s) is within the limit (349056.0s)
[2026-01-15 12:11:04] 2026-01-15 17:09:56,602 | INFO     | time since job start (3365s) is within the limit (349056.0s)
[2026-01-15 12:11:04] 2026-01-15 17:09:56,893 | INFO     | monitor loop #245: job 0:6970538437 is in state 'finished'
[2026-01-15 12:11:04] 2026-01-15 17:09:56,893 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:11:04] 2026-01-15 17:09:58,612 | INFO     | time since job start (3367s) is within the limit (349056.0s)
[2026-01-15 12:11:04] 2026-01-15 17:09:59,396 | INFO     | monitor loop #246: job 0:6970538437 is in state 'finished'
[2026-01-15 12:11:04] 2026-01-15 17:09:59,396 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:11:04] 2026-01-15 17:10:00,619 | INFO     | time since job start (3369s) is within the limit (349056.0s)
[2026-01-15 12:11:04] 2026-01-15 17:10:01,901 | INFO     | monitor loop #247: job 0:6970538437 is in state 'finished'
[2026-01-15 12:11:04] 2026-01-15 17:10:01,901 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:11:04] 2026-01-15 17:10:02,629 | INFO     | time since job start (3371s) is within the limit (349056.0s)
[2026-01-15 12:11:04] 2026-01-15 17:10:04,421 | INFO     | monitor loop #248: job 0:6970538437 is in state 'finished'
[2026-01-15 12:11:04] 2026-01-15 17:10:04,421 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:11:04] 2026-01-15 17:10:04,445 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-15 12:11:04] 2026-01-15 17:10:04,450 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3588.039921874999
[2026-01-15 12:11:04] 2026-01-15 17:10:04,463 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6970538437/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 12:11:04] 2026-01-15 17:10:04,464 | INFO     | extracted standard info from prmon json
[2026-01-15 12:11:04] 2026-01-15 17:10:04,464 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 12:11:04] 2026-01-15 17:10:04,464 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 12:11:04] 2026-01-15 17:10:04,464 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 12:11:04] 2026-01-15 17:10:04,464 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 12:11:04] 2026-01-15 17:10:04,465 | INFO     | fitting pss+swap vs Time
[2026-01-15 12:11:04] 2026-01-15 17:10:04,465 | INFO     | sum of square deviations: 32181892.978723403
[2026-01-15 12:11:04] 2026-01-15 17:10:04,465 | INFO     | sum of deviations: -1556485015.0851064
[2026-01-15 12:11:04] 2026-01-15 17:10:04,465 | INFO     | mean x: 1768495454.0212767
[2026-01-15 12:11:04] 2026-01-15 17:10:04,466 | INFO     | mean y: 2832308.085106383
[2026-01-15 12:11:04] 2026-01-15 17:10:04,466 | INFO     | intersect: 85536541442.29034
[2026-01-15 12:11:04] 2026-01-15 17:10:04,466 | INFO     | chi2: 0.08922846153242689
[2026-01-15 12:11:04] 2026-01-15 17:10:04,466 | INFO     | current memory leak: -48.37 B/s (using 47 data points, chi2=0.09)
[2026-01-15 12:11:04] 2026-01-15 17:10:04,466 | INFO     | could have reported an average CPU frequency of 3628 MHz (5 samples)
[2026-01-15 12:11:04] 2026-01-15 17:10:04,466 | INFO     | ..............................
[2026-01-15 12:11:04] 2026-01-15 17:10:04,466 | INFO     | . Timing measurements:
[2026-01-15 12:11:04] 2026-01-15 17:10:04,466 | INFO     | . get job = 0 s
[2026-01-15 12:11:04] 2026-01-15 17:10:04,466 | INFO     | . initial setup = 3 s
[2026-01-15 12:11:04] 2026-01-15 17:10:04,466 | INFO     | . payload setup = 35 s
[2026-01-15 12:11:04] 2026-01-15 17:10:04,466 | INFO     | . stage-in = 0 s
[2026-01-15 12:11:04] 2026-01-15 17:10:04,466 | INFO     | . payload execution = 3259 s
[2026-01-15 12:11:04] 2026-01-15 17:10:04,466 | INFO     | . stage-out = 1 s
[2026-01-15 12:11:04] 2026-01-15 17:10:04,466 | INFO     | . log creation = 0 s
[2026-01-15 12:11:04] 2026-01-15 17:10:04,466 | INFO     | ..............................
[2026-01-15 12:11:04] 2026-01-15 17:10:04,521 | INFO     | 
[2026-01-15 12:11:04] 2026-01-15 17:10:04,521 | INFO     | job summary report
[2026-01-15 12:11:04] 2026-01-15 17:10:04,521 | INFO     | --------------------------------------------------
[2026-01-15 12:11:04] 2026-01-15 17:10:04,521 | INFO     | PanDA job id: 6970538437
[2026-01-15 12:11:04] 2026-01-15 17:10:04,521 | INFO     | task id: 48215263
[2026-01-15 12:11:04] 2026-01-15 17:10:04,521 | INFO     | errors: (none)
[2026-01-15 12:11:04] 2026-01-15 17:10:04,521 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-15 12:11:04] 2026-01-15 17:10:04,521 | INFO     | pilot state: finished 
[2026-01-15 12:11:04] 2026-01-15 17:10:04,521 | INFO     | transexitcode: 0
[2026-01-15 12:11:04] 2026-01-15 17:10:04,521 | INFO     | exeerrorcode: 0
[2026-01-15 12:11:04] 2026-01-15 17:10:04,521 | INFO     | exeerrordiag: 
[2026-01-15 12:11:04] 2026-01-15 17:10:04,521 | INFO     | exitcode: 0
[2026-01-15 12:11:04] 2026-01-15 17:10:04,521 | INFO     | exitmsg: OK
[2026-01-15 12:11:04] 2026-01-15 17:10:04,521 | INFO     | cpuconsumptiontime: 16990 s
[2026-01-15 12:11:04] 2026-01-15 17:10:04,521 | INFO     | nevents: 400
[2026-01-15 12:11:04] 2026-01-15 17:10:04,521 | INFO     | neventsw: 0
[2026-01-15 12:11:04] 2026-01-15 17:10:04,521 | INFO     | pid: 906978
[2026-01-15 12:11:04] 2026-01-15 17:10:04,521 | INFO     | pgrp: 906978
[2026-01-15 12:11:04] 2026-01-15 17:10:04,521 | INFO     | corecount: 10
[2026-01-15 12:11:04] 2026-01-15 17:10:04,521 | INFO     | event service: False
[2026-01-15 12:11:04] 2026-01-15 17:10:04,521 | INFO     | sizes: {0: 2283124, 1: 2283809, 2: 2284008, 13: 2284008, 23: 2284064, 24: 2284354, 34: 2284510, 3299: 2310126, 3300: 2310125, 3303: 2319179, 3304: 2319235, 3319: 2
[2026-01-15 12:11:04] 2026-01-15 17:10:04,522 | INFO     | --------------------------------------------------
[2026-01-15 12:11:04] 2026-01-15 17:10:04,522 | INFO     | 
[2026-01-15 12:11:04] 2026-01-15 17:10:04,522 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-15 12:11:04] 2026-01-15 17:10:04,577 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 12:11:04] 2026-01-15 17:10:04,578 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 12:11:04] 2026-01-15 17:10:04,578 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 12:11:04] 2026-01-15 17:10:04,578 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 12:11:04] 2026-01-15 17:10:04,578 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 12:11:04] 2026-01-15 17:10:04,578 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 12:11:04] 2026-01-15 17:10:04,578 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 12:11:04] 2026-01-15 17:10:04,578 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 12:11:04] 2026-01-15 17:10:04,578 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 12:11:04] 2026-01-15 17:10:04,578 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 12:11:04] 2026-01-15 17:10:04,578 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 12:11:04] 2026-01-15 17:10:04,578 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 12:11:04] 2026-01-15 17:10:04,578 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 12:11:04] 2026-01-15 17:10:04,578 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 12:11:04] 2026-01-15 17:10:04,578 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 12:11:04] 2026-01-15 17:10:04,578 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 12:11:04] 2026-01-15 17:10:04,578 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 12:11:04] 2026-01-15 17:10:04,578 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 12:11:04] 2026-01-15 17:10:04,578 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 12:11:04] 2026-01-15 17:10:04,578 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 12:11:04] 2026-01-15 17:10:04,578 | INFO     | job 6970538437 has completed (purged errors)
[2026-01-15 12:11:04] 2026-01-15 17:10:04,579 | INFO     | overall cleanup function is called
[2026-01-15 12:11:04] 2026-01-15 17:10:05,587 | INFO     | --- collectZombieJob: --- 10, [906978]
[2026-01-15 12:11:04] 2026-01-15 17:10:05,587 | INFO     | zombie collector waiting for pid 906978
[2026-01-15 12:11:04] 2026-01-15 17:10:05,587 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 12:11:04] 2026-01-15 17:10:05,587 | INFO     | collected zombie processes
[2026-01-15 12:11:04] 2026-01-15 17:10:05,587 | INFO     | will attempt to kill all subprocesses of pid=906978
[2026-01-15 12:11:04] 2026-01-15 17:10:06,182 | INFO     | process IDs to be killed: [906978] (in reverse order)
[2026-01-15 12:11:04] 2026-01-15 17:10:06,427 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 12:11:04] 2026-01-15 17:10:06,427 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 12:11:04] 2026-01-15 17:10:06,453 | INFO     | did not find any defunct processes belonging to 906978
[2026-01-15 12:11:04] 2026-01-15 17:10:06,479 | INFO     | did not find any defunct processes belonging to 906978
[2026-01-15 12:11:04] 2026-01-15 17:10:06,479 | INFO     | ready for new job
[2026-01-15 12:11:04] 2026-01-15 17:10:06,479 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 12:11:04] 2026-01-15 17:10:06,481 | INFO     | ***************************************
[2026-01-15 12:11:04] 2026-01-15 17:10:06,483 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 12:11:04] 2026-01-15 17:10:06,483 | INFO     | ***************************************
[2026-01-15 12:11:04] 2026-01-15 17:10:06,483 | INFO     | 
[2026-01-15 12:11:04] 2026-01-15 17:10:06,488 | INFO     | architecture information:
[2026-01-15 12:11:04] 2026-01-15 17:10:06,488 | INFO     | executing command: cat /etc/os-release
[2026-01-15 12:11:04] 2026-01-15 17:10:06,508 | INFO     | cat /etc/os-release:
[2026-01-15 12:11:04] NAME="CentOS Linux"
[2026-01-15 12:11:04] VERSION="7 (Core)"
[2026-01-15 12:11:04] ID="centos"
[2026-01-15 12:11:04] ID_LIKE="rhel fedora"
[2026-01-15 12:11:04] VERSION_ID="7"
[2026-01-15 12:11:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 12:11:04] ANSI_COLOR="0;31"
[2026-01-15 12:11:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 12:11:04] HOME_URL="https://www.centos.org/"
[2026-01-15 12:11:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 12:11:04] 
[2026-01-15 12:11:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 12:11:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 12:11:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 12:11:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 12:11:04] 
[2026-01-15 12:11:04] 2026-01-15 17:10:06,508 | INFO     | ***************************************
[2026-01-15 12:11:04] 2026-01-15 17:10:07,012 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-15 12:11:04] 2026-01-15 17:10:07,063 | INFO     | sufficient remaining disk space (92379545600 B)
[2026-01-15 12:11:04] 2026-01-15 17:10:07,064 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 12:11:04] 2026-01-15 17:10:07,064 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 12:11:04] 2026-01-15 17:10:07,064 | INFO     | update_server=False
[2026-01-15 12:11:04] 2026-01-15 17:10:07,064 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 12:11:04] 2026-01-15 17:10:07,064 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 12:11:04] 2026-01-15 17:10:07,151 | INFO     | all data control threads have been joined
[2026-01-15 12:11:04] 2026-01-15 17:10:07,954 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 12:11:04] 2026-01-15 17:10:07,954 | INFO     | aborting loop
[2026-01-15 12:11:04] 2026-01-15 17:10:08,070 | INFO     | [job] retrieve thread has finished
[2026-01-15 12:11:04] 2026-01-15 17:10:08,093 | INFO     | all job control threads have been joined
[2026-01-15 12:11:04] 2026-01-15 17:10:08,156 | INFO     | [data] control thread has finished
[2026-01-15 12:11:04] 2026-01-15 17:10:08,251 | INFO     | [payload] failed_post thread has finished
[2026-01-15 12:11:04] 2026-01-15 17:10:08,437 | INFO     | all payload control threads have been joined
[2026-01-15 12:11:04] 2026-01-15 17:10:08,923 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 12:11:04] 2026-01-15 17:10:08,959 | INFO     | [job] job monitor thread has finished
[2026-01-15 12:11:04] 2026-01-15 17:10:09,035 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 12:11:04] 2026-01-15 17:10:09,063 | INFO     | [data] copytool_in thread has finished
[2026-01-15 12:11:04] 2026-01-15 17:10:09,071 | INFO     | [data] copytool_out thread has finished
[2026-01-15 12:11:04] 2026-01-15 17:10:09,100 | INFO     | [job] control thread has finished
[2026-01-15 12:11:04] 2026-01-15 17:10:09,120 | INFO     | [job] validate thread has finished
[2026-01-15 12:11:04] 2026-01-15 17:10:09,181 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 12:11:04] 2026-01-15 17:10:09,380 | INFO     | [payload] validate_post thread has finished
[2026-01-15 12:11:04] 2026-01-15 17:10:09,442 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 12:11:04] 2026-01-15 17:10:09,443 | INFO     | [payload] control thread has finished
[2026-01-15 12:11:04] 2026-01-15 17:10:09,538 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 12:11:04] 2026-01-15 17:10:10,544 | INFO     | [job] queue monitor thread has finished
[2026-01-15 12:11:04] 2026-01-15 17:10:13,449 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 12:11:04] 2026-01-15 17:10:18,039 | INFO     | job.realtimelogging is not enabled
[2026-01-15 12:11:04] 2026-01-15 17:10:19,047 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 12:11:04] 2026-01-15 17:10:36,328 | INFO     | PID=893670 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-15 12:11:04] 2026-01-15 17:10:36,328 | INFO     | .. there are 26 such processes running
[2026-01-15 12:11:04] 2026-01-15 17:10:36,328 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 12:11:04] 2026-01-15 17:10:36,328 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 12:11:04] 2026-01-15 17:10:36,328 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 12:11:04] 2026-01-15 17:10:58,464 | INFO     | [monitor] cgroup control has ended
[2026-01-15 12:11:04] 2026-01-15 17:10:59,201 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140623519172416)>', '<ExcThread(monitor, started 140623176779520)>']
[2026-01-15 12:11:04] 2026-01-15 17:10:59,466 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 12:11:04] 2026-01-15 17:10:59,466 | INFO     | [monitor] control thread has ended
[2026-01-15 12:11:04] 2026-01-15 17:11:04,227 | INFO     | all workflow threads have been joined
[2026-01-15 12:11:04] 2026-01-15 17:11:04,229 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 12:11:04] 2026-01-15 17:11:04,229 | INFO     | traces error code: 0
[2026-01-15 12:11:04] 2026-01-15 17:11:04,230 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 12:11:04] 2026-01-15 17:11:04,376 [wrapper] ==== pilot stdout END ====
[2026-01-15 12:11:04] 2026-01-15 17:11:04,379 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 12:11:04] 2026-01-15 17:11:04,386 [wrapper] pilotpid: 893670
[2026-01-15 12:11:04] 2026-01-15 17:11:04,394 [wrapper] Pilot exit status: 0
[2026-01-15 12:11:04] 2026-01-15 17:11:04,449 [wrapper] pandaids: 6970538437
[2026-01-15 12:11:04] 2026-01-15 17:11:04,626 [wrapper] cleanup supervisor_pilot 1180657 893671
[2026-01-15 12:11:04] 2026-01-15 17:11:04,633 [wrapper] Test setup, not cleaning
[2026-01-15 12:11:04] 2026-01-15 17:11:04,636 [wrapper] apfmon messages muted
[2026-01-15 12:11:04] 2026-01-15 17:11:04,639 [wrapper] ==== wrapper stdout END ====
[2026-01-15 12:11:04] 2026-01-15 17:11:04,645 [wrapper] ==== wrapper stderr END ====
[2026-01-15 12:11:04]  *** Error codes and diagnostics ***
[2026-01-15 12:11:04]     "exeErrorCode": 0,
[2026-01-15 12:11:04]     "exeErrorDiag": "",
[2026-01-15 12:11:04]     "pilotErrorCode": 0,
[2026-01-15 12:11:04]     "pilotErrorDiag": "",
[2026-01-15 12:11:04]  *** Listing of results directory ***
[2026-01-15 12:11:04] total 735280
[2026-01-15 12:11:04] -rw-r--r--. 1 boincer umatlas    579449 Jan 15 03:34 pilot3.tar.gz
[2026-01-15 12:11:04] -rw-r--r--. 1 boincer umatlas      5112 Jan 15 03:35 queuedata.json
[2026-01-15 12:11:04] -rwx------. 1 boincer umatlas     36322 Jan 15 03:36 runpilot2-wrapper.sh
[2026-01-15 12:11:04] -rw-r--r--. 1 boincer umatlas       100 Jan 15 11:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 12:11:04] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 15 11:12 run_atlas
[2026-01-15 12:11:04] -rw-r--r--. 1 boincer umatlas       105 Jan 15 11:12 job.xml
[2026-01-15 12:11:04] -rw-r--r--. 2 boincer umatlas 598479219 Jan 15 11:12 EVNT.32794306._001961.pool.root.1
[2026-01-15 12:11:04] -rw-r--r--. 2 boincer umatlas     15847 Jan 15 11:12 start_atlas.sh
[2026-01-15 12:11:04] drwxrwx--x. 2 boincer umatlas      4096 Jan 15 11:12 shared
[2026-01-15 12:11:04] -rw-r--r--. 2 boincer umatlas    592403 Jan 15 11:12 input.tar.gz
[2026-01-15 12:11:04] -rw-r--r--. 1 boincer umatlas         0 Jan 15 11:12 boinc_lockfile
[2026-01-15 12:11:04] -rw-r--r--. 1 boincer umatlas      2509 Jan 15 11:13 pandaJob.out
[2026-01-15 12:11:04] -rw-------. 1 boincer umatlas        57 Jan 15 11:13 setup.sh.local
[2026-01-15 12:11:04] -rw-------. 1 boincer umatlas   1004083 Jan 15 11:13 agis_schedconf.cvmfs.json
[2026-01-15 12:11:04] -rw-------. 1 boincer umatlas   1516246 Jan 15 11:13 agis_ddmendpoints.agis.ALL.json
[2026-01-15 12:11:04] drwx------. 5 boincer umatlas      4096 Jan 15 11:13 pilot3
[2026-01-15 12:11:04] -rw-r--r--. 1 boincer umatlas      7171 Jan 15 12:01 init_data.xml
[2026-01-15 12:11:04] -rw-------. 1 boincer umatlas 148826781 Jan 15 12:09 HITS.48215263._050523.pool.root.1
[2026-01-15 12:11:04] -rw-r--r--. 1 boincer umatlas       530 Jan 15 12:09 boinc_task_state.xml
[2026-01-15 12:11:04] -rw-------. 1 boincer umatlas      1033 Jan 15 12:09 memory_monitor_summary.json
[2026-01-15 12:11:04] -rw-------. 1 boincer umatlas        95 Jan 15 12:09 pilot_heartbeat.json
[2026-01-15 12:11:04] -rw-------. 1 boincer umatlas    349690 Jan 15 12:09 log.48215263._050523.job.log.tgz.1
[2026-01-15 12:11:04] -rw-------. 1 boincer umatlas      7791 Jan 15 12:10 heartbeat.json
[2026-01-15 12:11:04] -rw-r--r--. 1 boincer umatlas      8192 Jan 15 12:10 boinc_mmap_file
[2026-01-15 12:11:04] -rw-r--r--. 1 boincer umatlas        27 Jan 15 12:11 wrapper_checkpoint.txt
[2026-01-15 12:11:04] -rw-------. 1 boincer umatlas      4895 Jan 15 12:11 pilotlog.txt
[2026-01-15 12:11:04] -rw-------. 1 boincer umatlas    494652 Jan 15 12:11 log.48215263._050523.job.log.1
[2026-01-15 12:11:04] -rw-------. 1 boincer umatlas       357 Jan 15 12:11 output.list
[2026-01-15 12:11:04] -rw-r--r--. 1 boincer umatlas       620 Jan 15 12:11 runtime_log
[2026-01-15 12:11:04] -rw-------. 1 boincer umatlas    860160 Jan 15 12:11 result.tar.gz
[2026-01-15 12:11:04] -rw-r--r--. 1 boincer umatlas      9334 Jan 15 12:11 runtime_log.err
[2026-01-15 12:11:04] -rw-------. 1 boincer umatlas       650 Jan 15 12:11 02lKDmy0X08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm2huKDml6mpXo.diag
[2026-01-15 12:11:04] -rw-r--r--. 1 boincer umatlas     22402 Jan 15 12:11 stderr.txt
[2026-01-15 12:11:04] HITS file was successfully produced:
[2026-01-15 12:11:04] -rw-------. 1 boincer umatlas 148826781 Jan 15 12:09 shared/HITS.pool.root.1
[2026-01-15 12:11:04]  *** Contents of shared directory: ***
[2026-01-15 12:11:04] total 731240
[2026-01-15 12:11:04] -rw-r--r--. 2 boincer umatlas 598479219 Jan 15 11:12 ATLAS.root_0
[2026-01-15 12:11:04] -rw-r--r--. 2 boincer umatlas     15847 Jan 15 11:12 start_atlas.sh
[2026-01-15 12:11:04] -rw-r--r--. 2 boincer umatlas    592403 Jan 15 11:12 input.tar.gz
[2026-01-15 12:11:04] -rw-------. 1 boincer umatlas 148826781 Jan 15 12:09 HITS.pool.root.1
[2026-01-15 12:11:04] -rw-------. 1 boincer umatlas    860160 Jan 15 12:11 result.tar.gz
12:11:06 (887381): run_atlas exited; CPU time 17068.424810
12:11:06 (887381): called boinc_finish(0)

</stderr_txt>
]]>

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