Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:08:52 (3229298): wrapper (7.7.26015): starting
11:08:52 (3229298): wrapper: running run_atlas (--nthreads 8)
[2026-01-15 11:08:52] Arguments: --nthreads 8
[2026-01-15 11:08:52] Threads: 8
[2026-01-15 11:08:52] Checking for CVMFS
[2026-01-15 11:08:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 11:08:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 11:08:53] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 11:08:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 11:08:53] 2.13.3.0 14328 102248 170632 155177 3 878 37948836 40960000 35745 16776704 0 1042956147 99.705 815958841 50271 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-15 11:08:53] CVMFS is ok
[2026-01-15 11:08:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 11:08:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 11:08:53] Further information can be found at the LHC@home message board.
[2026-01-15 11:08:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 11:08:53] Checking for apptainer binary...
[2026-01-15 11:08:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 11:08:53] Running /usr/bin/apptainer --version
[2026-01-15 11:08:53] apptainer version 1.4.5-2.el9
[2026-01-15 11:08:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 11:08:54] c8-16-2.aglt2.org
[2026-01-15 11:08:54] apptainer works
[2026-01-15 11:08:54] Set ATHENA_PROC_NUMBER=8
[2026-01-15 11:08:54] Set ATHENA_CORE_NUMBER=8
[2026-01-15 11:08:54] Starting ATLAS job with PandaID=6970393489
[2026-01-15 11:08:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 12:11:21]  *** The last 200 lines of the pilot log: ***
[2026-01-15 12:11:21]  scope=mc23_13p6TeV
[2026-01-15 12:11:21]  status=None
[2026-01-15 12:11:21]  status_code=0
[2026-01-15 12:11:21]  storage_token=
[2026-01-15 12:11:21]  surl=/tmp/boinchome/slots/7/PanDA_Pilot-6970393489/log.48215263._046800.job.log.tgz.1
[2026-01-15 12:11:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/77/2a/log.48215263._046800.job.log.tgz.1
[2026-01-15 12:11:21]  workdir=None
[2026-01-15 12:11:21] ]
[2026-01-15 12:11:21] 2026-01-15 17:10:05,202 | INFO     | transferring file log.48215263._046800.job.log.tgz.1 from /tmp/boinchome/slots/7/PanDA_Pilot-6970393489/log.48215263._046800.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-15 12:11:21] 2026-01-15 17:10:05,202 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/7/PanDA_Pilot-6970393489/log.48215263._046800.job.log.tgz.1 /tmp/boinchome/slots/7/log.48215263._046800.job
[2026-01-15 12:11:21] 2026-01-15 17:10:05,221 | INFO     | adding to output.list: log.48215263._046800.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/77/2a/log.48215263._046800.job.log.tg
[2026-01-15 12:11:21] 2026-01-15 17:10:05,222 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-15 12:11:21] 2026-01-15 17:10:05,222 | INFO     | summary of transferred files:
[2026-01-15 12:11:21] 2026-01-15 17:10:05,222 | INFO     |  -- lfn=log.48215263._046800.job.log.tgz.1, status_code=0, status=transferred
[2026-01-15 12:11:21] 2026-01-15 17:10:05,222 | INFO     | stage-out finished correctly
[2026-01-15 12:11:21] 2026-01-15 17:10:05,813 | INFO     | monitor loop #256: job 0:6970393489 is in state 'finished'
[2026-01-15 12:11:21] 2026-01-15 17:10:05,814 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:11:21] 2026-01-15 17:10:06,855 | INFO     | time since job start (3658s) is within the limit (349056.0s)
[2026-01-15 12:11:21] 2026-01-15 17:10:06,855 | INFO     | 3660s have passed since pilot start - server update state is 'RUNNING'
[2026-01-15 12:11:21] 2026-01-15 17:10:08,317 | INFO     | monitor loop #257: job 0:6970393489 is in state 'finished'
[2026-01-15 12:11:21] 2026-01-15 17:10:08,317 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:11:21] 2026-01-15 17:10:08,710 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-15 12:11:21] 2026-01-15 17:10:08,756 | INFO     | job 6970393489 has state=finished
[2026-01-15 12:11:21] 2026-01-15 17:10:08,756 | INFO     | preparing for final server update for job 6970393489 in state='finished'
[2026-01-15 12:11:21] 2026-01-15 17:10:08,756 | INFO     | this job has now completed (state=finished)
[2026-01-15 12:11:21] 2026-01-15 17:10:08,756 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-15 12:11:21] 2026-01-15 17:10:08,756 | INFO     | log transfer has been attempted: DONE
[2026-01-15 12:11:21] 2026-01-15 17:10:08,757 | INFO     | job 6970393489 has finished - writing final server update
[2026-01-15 12:11:21] 2026-01-15 17:10:08,757 | INFO     | total number of processed events: 400 (read)
[2026-01-15 12:11:21] 2026-01-15 17:10:08,757 | INFO     | executing command: lscpu
[2026-01-15 12:11:21] 2026-01-15 17:10:08,861 | INFO     | time since job start (3660s) is within the limit (349056.0s)
[2026-01-15 12:11:21] 2026-01-15 17:10:08,873 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-15 12:11:21] 2026-01-15 17:10:10,821 | INFO     | monitor loop #258: job 0:6970393489 is in state 'finished'
[2026-01-15 12:11:21] 2026-01-15 17:10:10,821 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:11:21] 2026-01-15 17:10:10,868 | INFO     | time since job start (3662s) is within the limit (349056.0s)
[2026-01-15 12:11:21] 2026-01-15 17:10:12,873 | INFO     | time since job start (3664s) is within the limit (349056.0s)
[2026-01-15 12:11:21] 2026-01-15 17:10:13,325 | INFO     | monitor loop #259: job 0:6970393489 is in state 'finished'
[2026-01-15 12:11:21] 2026-01-15 17:10:13,326 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:11:21] 2026-01-15 17:10:14,171 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-15 12:11:21] 2026-01-15 17:10:14,175 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3787.5187187500005
[2026-01-15 12:11:21] 2026-01-15 17:10:14,185 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6970393489/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 12:11:21] 2026-01-15 17:10:14,185 | INFO     | extracted standard info from prmon json
[2026-01-15 12:11:21] 2026-01-15 17:10:14,185 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 12:11:21] 2026-01-15 17:10:14,185 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 12:11:21] 2026-01-15 17:10:14,185 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 12:11:21] 2026-01-15 17:10:14,185 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 12:11:21] 2026-01-15 17:10:14,186 | INFO     | fitting pss+swap vs Time
[2026-01-15 12:11:21] 2026-01-15 17:10:14,186 | INFO     | sum of square deviations: 46147842.0
[2026-01-15 12:11:21] 2026-01-15 17:10:14,186 | INFO     | sum of deviations: 487218041.00000006
[2026-01-15 12:11:21] 2026-01-15 17:10:14,186 | INFO     | mean x: 1768495273.0
[2026-01-15 12:11:21] 2026-01-15 17:10:14,187 | INFO     | mean y: 2516400.9811320757
[2026-01-15 12:11:21] 2026-01-15 17:10:14,187 | INFO     | intersect: -18668839941.723263
[2026-01-15 12:11:21] 2026-01-15 17:10:14,187 | INFO     | chi2: 0.00010772528757132476
[2026-01-15 12:11:21] 2026-01-15 17:10:14,187 | INFO     | current memory leak: 10.56 B/s (using 53 data points, chi2=0.00)
[2026-01-15 12:11:21] 2026-01-15 17:10:14,187 | INFO     | could have reported an average CPU frequency of 3787 MHz (6 samples)
[2026-01-15 12:11:21] 2026-01-15 17:10:14,187 | INFO     | ..............................
[2026-01-15 12:11:21] 2026-01-15 17:10:14,187 | INFO     | . Timing measurements:
[2026-01-15 12:11:21] 2026-01-15 17:10:14,187 | INFO     | . get job = 0 s
[2026-01-15 12:11:21] 2026-01-15 17:10:14,187 | INFO     | . initial setup = 2 s
[2026-01-15 12:11:21] 2026-01-15 17:10:14,187 | INFO     | . payload setup = 8 s
[2026-01-15 12:11:21] 2026-01-15 17:10:14,187 | INFO     | . stage-in = 0 s
[2026-01-15 12:11:21] 2026-01-15 17:10:14,187 | INFO     | . payload execution = 3623 s
[2026-01-15 12:11:21] 2026-01-15 17:10:14,187 | INFO     | . stage-out = 1 s
[2026-01-15 12:11:21] 2026-01-15 17:10:14,187 | INFO     | . log creation = 1 s
[2026-01-15 12:11:21] 2026-01-15 17:10:14,187 | INFO     | ..............................
[2026-01-15 12:11:21] 2026-01-15 17:10:14,349 | INFO     | 
[2026-01-15 12:11:21] 2026-01-15 17:10:14,350 | INFO     | job summary report
[2026-01-15 12:11:21] 2026-01-15 17:10:14,350 | INFO     | --------------------------------------------------
[2026-01-15 12:11:21] 2026-01-15 17:10:14,350 | INFO     | PanDA job id: 6970393489
[2026-01-15 12:11:21] 2026-01-15 17:10:14,350 | INFO     | task id: 48215263
[2026-01-15 12:11:21] 2026-01-15 17:10:14,350 | INFO     | errors: (none)
[2026-01-15 12:11:21] 2026-01-15 17:10:14,350 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-15 12:11:21] 2026-01-15 17:10:14,350 | INFO     | pilot state: finished 
[2026-01-15 12:11:21] 2026-01-15 17:10:14,350 | INFO     | transexitcode: 0
[2026-01-15 12:11:21] 2026-01-15 17:10:14,350 | INFO     | exeerrorcode: 0
[2026-01-15 12:11:21] 2026-01-15 17:10:14,350 | INFO     | exeerrordiag: 
[2026-01-15 12:11:21] 2026-01-15 17:10:14,350 | INFO     | exitcode: 0
[2026-01-15 12:11:21] 2026-01-15 17:10:14,350 | INFO     | exitmsg: OK
[2026-01-15 12:11:21] 2026-01-15 17:10:14,350 | INFO     | cpuconsumptiontime: 15459 s
[2026-01-15 12:11:21] 2026-01-15 17:10:14,350 | INFO     | nevents: 400
[2026-01-15 12:11:21] 2026-01-15 17:10:14,350 | INFO     | neventsw: 0
[2026-01-15 12:11:21] 2026-01-15 17:10:14,350 | INFO     | pid: 3245544
[2026-01-15 12:11:21] 2026-01-15 17:10:14,350 | INFO     | pgrp: 3245544
[2026-01-15 12:11:21] 2026-01-15 17:10:14,350 | INFO     | corecount: 8
[2026-01-15 12:11:21] 2026-01-15 17:10:14,350 | INFO     | event service: False
[2026-01-15 12:11:21] 2026-01-15 17:10:14,350 | INFO     | sizes: {0: 2283901, 7: 2284163, 11: 2284191, 3635: 2310146, 3638: 2319144, 3642: 2319200, 3647: 2319522}
[2026-01-15 12:11:21] 2026-01-15 17:10:14,350 | INFO     | --------------------------------------------------
[2026-01-15 12:11:21] 2026-01-15 17:10:14,350 | INFO     | 
[2026-01-15 12:11:21] 2026-01-15 17:10:14,350 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2026-01-15 12:11:21] 2026-01-15 17:10:14,373 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 12:11:21] 2026-01-15 17:10:14,373 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 12:11:21] 2026-01-15 17:10:14,373 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 12:11:21] 2026-01-15 17:10:14,373 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 12:11:21] 2026-01-15 17:10:14,373 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 12:11:21] 2026-01-15 17:10:14,373 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 12:11:21] 2026-01-15 17:10:14,373 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 12:11:21] 2026-01-15 17:10:14,373 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 12:11:21] 2026-01-15 17:10:14,373 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 12:11:21] 2026-01-15 17:10:14,373 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 12:11:21] 2026-01-15 17:10:14,373 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 12:11:21] 2026-01-15 17:10:14,373 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 12:11:21] 2026-01-15 17:10:14,373 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 12:11:21] 2026-01-15 17:10:14,373 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 12:11:21] 2026-01-15 17:10:14,374 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 12:11:21] 2026-01-15 17:10:14,374 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 12:11:21] 2026-01-15 17:10:14,374 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 12:11:21] 2026-01-15 17:10:14,374 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 12:11:21] 2026-01-15 17:10:14,374 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 12:11:21] 2026-01-15 17:10:14,374 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 12:11:21] 2026-01-15 17:10:14,374 | INFO     | job 6970393489 has completed (purged errors)
[2026-01-15 12:11:21] 2026-01-15 17:10:14,374 | INFO     | overall cleanup function is called
[2026-01-15 12:11:21] 2026-01-15 17:10:15,387 | INFO     | --- collectZombieJob: --- 10, [3245544]
[2026-01-15 12:11:21] 2026-01-15 17:10:15,387 | INFO     | zombie collector waiting for pid 3245544
[2026-01-15 12:11:21] 2026-01-15 17:10:15,388 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 12:11:21] 2026-01-15 17:10:15,388 | INFO     | collected zombie processes
[2026-01-15 12:11:21] 2026-01-15 17:10:15,388 | INFO     | will attempt to kill all subprocesses of pid=3245544
[2026-01-15 12:11:21] 2026-01-15 17:10:15,831 | INFO     | process IDs to be killed: [3245544] (in reverse order)
[2026-01-15 12:11:21] 2026-01-15 17:10:15,983 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 12:11:21] 2026-01-15 17:10:15,983 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 12:11:21] 2026-01-15 17:10:16,006 | INFO     | did not find any defunct processes belonging to 3245544
[2026-01-15 12:11:21] 2026-01-15 17:10:16,029 | INFO     | did not find any defunct processes belonging to 3245544
[2026-01-15 12:11:21] 2026-01-15 17:10:16,029 | INFO     | ready for new job
[2026-01-15 12:11:21] 2026-01-15 17:10:16,029 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 12:11:21] 2026-01-15 17:10:16,044 | INFO     | ***************************************
[2026-01-15 12:11:21] 2026-01-15 17:10:16,044 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 12:11:21] 2026-01-15 17:10:16,044 | INFO     | ***************************************
[2026-01-15 12:11:21] 2026-01-15 17:10:16,044 | INFO     | 
[2026-01-15 12:11:21] 2026-01-15 17:10:16,048 | INFO     | architecture information:
[2026-01-15 12:11:21] 2026-01-15 17:10:16,049 | INFO     | executing command: cat /etc/os-release
[2026-01-15 12:11:21] 2026-01-15 17:10:16,063 | INFO     | cat /etc/os-release:
[2026-01-15 12:11:21] NAME="CentOS Linux"
[2026-01-15 12:11:21] VERSION="7 (Core)"
[2026-01-15 12:11:21] ID="centos"
[2026-01-15 12:11:21] ID_LIKE="rhel fedora"
[2026-01-15 12:11:21] VERSION_ID="7"
[2026-01-15 12:11:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 12:11:21] ANSI_COLOR="0;31"
[2026-01-15 12:11:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 12:11:21] HOME_URL="https://www.centos.org/"
[2026-01-15 12:11:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 12:11:21] 
[2026-01-15 12:11:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 12:11:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 12:11:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 12:11:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 12:11:21] 
[2026-01-15 12:11:21] 2026-01-15 17:10:16,064 | INFO     | ***************************************
[2026-01-15 12:11:21] 2026-01-15 17:10:16,567 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2026-01-15 12:11:21] 2026-01-15 17:10:16,593 | INFO     | sufficient remaining disk space (170945150976 B)
[2026-01-15 12:11:21] 2026-01-15 17:10:16,593 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 12:11:21] 2026-01-15 17:10:16,593 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 12:11:21] 2026-01-15 17:10:16,593 | INFO     | update_server=False
[2026-01-15 12:11:21] 2026-01-15 17:10:16,593 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 12:11:21] 2026-01-15 17:10:16,594 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 12:11:21] 2026-01-15 17:10:16,834 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 12:11:21] 2026-01-15 17:10:16,835 | INFO     | aborting loop
[2026-01-15 12:11:21] 2026-01-15 17:10:17,344 | INFO     | all job control threads have been joined
[2026-01-15 12:11:21] 2026-01-15 17:10:17,403 | INFO     | all payload control threads have been joined
[2026-01-15 12:11:21] 2026-01-15 17:10:17,598 | INFO     | [job] retrieve thread has finished
[2026-01-15 12:11:21] 2026-01-15 17:10:17,600 | INFO     | [payload] failed_post thread has finished
[2026-01-15 12:11:21] 2026-01-15 17:10:17,686 | INFO     | [payload] validate_post thread has finished
[2026-01-15 12:11:21] 2026-01-15 17:10:17,689 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 12:11:21] 2026-01-15 17:10:17,699 | INFO     | all data control threads have been joined
[2026-01-15 12:11:21] 2026-01-15 17:10:17,839 | INFO     | [job] job monitor thread has finished
[2026-01-15 12:11:21] 2026-01-15 17:10:17,858 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 12:11:21] 2026-01-15 17:10:17,901 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 12:11:21] 2026-01-15 17:10:18,101 | INFO     | [data] copytool_in thread has finished
[2026-01-15 12:11:21] 2026-01-15 17:10:18,148 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 12:11:21] 2026-01-15 17:10:18,280 | INFO     | [job] validate thread has finished
[2026-01-15 12:11:21] 2026-01-15 17:10:18,349 | INFO     | [job] control thread has finished
[2026-01-15 12:11:21] 2026-01-15 17:10:18,408 | INFO     | [payload] control thread has finished
[2026-01-15 12:11:21] 2026-01-15 17:10:18,600 | INFO     | [data] copytool_out thread has finished
[2026-01-15 12:11:21] 2026-01-15 17:10:18,705 | INFO     | [data] control thread has finished
[2026-01-15 12:11:21] 2026-01-15 17:10:19,240 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 12:11:21] 2026-01-15 17:10:19,267 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 12:11:21] 2026-01-15 17:10:20,246 | INFO     | [job] queue monitor thread has finished
[2026-01-15 12:11:21] 2026-01-15 17:10:23,273 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 12:11:21] 2026-01-15 17:10:46,526 | INFO     | PID=3238525 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 12:11:21] 2026-01-15 17:10:46,526 | INFO     | .. there are 26 such processes running
[2026-01-15 12:11:21] 2026-01-15 17:10:46,529 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 12:11:21] 2026-01-15 17:10:46,529 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 12:11:21] 2026-01-15 17:10:46,529 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 12:11:21] 2026-01-15 17:11:14,615 | INFO     | [monitor] cgroup control has ended
[2026-01-15 12:11:21] 2026-01-15 17:11:15,205 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139703996802880)>', '<ExcThread(monitor, started 139702971643648)>']
[2026-01-15 12:11:21] 2026-01-15 17:11:15,679 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 12:11:21] 2026-01-15 17:11:15,679 | INFO     | [monitor] control thread has ended
[2026-01-15 12:11:21] 2026-01-15 17:11:20,230 | INFO     | all workflow threads have been joined
[2026-01-15 12:11:21] 2026-01-15 17:11:20,230 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 12:11:21] 2026-01-15 17:11:20,231 | INFO     | traces error code: 0
[2026-01-15 12:11:21] 2026-01-15 17:11:20,231 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 12:11:21] 2026-01-15 17:11:20,607 [wrapper] ==== pilot stdout END ====
[2026-01-15 12:11:21] 2026-01-15 17:11:20,624 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 12:11:21] 2026-01-15 17:11:20,628 [wrapper] pilotpid: 3238525
[2026-01-15 12:11:21] 2026-01-15 17:11:20,630 [wrapper] Pilot exit status: 0
[2026-01-15 12:11:21] 2026-01-15 17:11:20,686 [wrapper] pandaids: 6970393489
[2026-01-15 12:11:21] 2026-01-15 17:11:21,091 [wrapper] cleanup supervisor_pilot 3647059 3238526
[2026-01-15 12:11:21] 2026-01-15 17:11:21,093 [wrapper] Test setup, not cleaning
[2026-01-15 12:11:21] 2026-01-15 17:11:21,095 [wrapper] apfmon messages muted
[2026-01-15 12:11:21] 2026-01-15 17:11:21,097 [wrapper] ==== wrapper stdout END ====
[2026-01-15 12:11:21] 2026-01-15 17:11:21,100 [wrapper] ==== wrapper stderr END ====
[2026-01-15 12:11:21]  *** Error codes and diagnostics ***
[2026-01-15 12:11:21]     "exeErrorCode": 0,
[2026-01-15 12:11:21]     "exeErrorDiag": "",
[2026-01-15 12:11:21]     "pilotErrorCode": 0,
[2026-01-15 12:11:21]     "pilotErrorDiag": "",
[2026-01-15 12:11:21]  *** Listing of results directory ***
[2026-01-15 12:11:21] total 742044
[2026-01-15 12:11:21] -rw-r--r--. 1 boincer umatlas    579449 Jan 14 23:50 pilot3.tar.gz
[2026-01-15 12:11:21] -rwx------. 1 boincer umatlas     36322 Jan 14 23:54 runpilot2-wrapper.sh
[2026-01-15 12:11:21] -rw-r--r--. 1 boincer umatlas      5112 Jan 15 00:00 queuedata.json
[2026-01-15 12:11:21] -rw-r--r--. 1 boincer umatlas       100 Jan 15 11:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 12:11:21] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 15 11:08 run_atlas
[2026-01-15 12:11:21] -rw-r--r--. 1 boincer umatlas       105 Jan 15 11:08 job.xml
[2026-01-15 12:11:21] -rw-r--r--. 2 boincer umatlas 600775391 Jan 15 11:08 EVNT.32794306._001683.pool.root.1
[2026-01-15 12:11:21] -rw-r--r--. 2 boincer umatlas     15847 Jan 15 11:08 start_atlas.sh
[2026-01-15 12:11:21] drwxrwx--x. 2 boincer umatlas      4096 Jan 15 11:08 shared
[2026-01-15 12:11:21] -rw-r--r--. 2 boincer umatlas    592418 Jan 15 11:08 input.tar.gz
[2026-01-15 12:11:21] -rw-r--r--. 1 boincer umatlas         0 Jan 15 11:08 boinc_lockfile
[2026-01-15 12:11:21] -rw-r--r--. 1 boincer umatlas      2508 Jan 15 11:08 pandaJob.out
[2026-01-15 12:11:21] -rw-------. 1 boincer umatlas        57 Jan 15 11:08 setup.sh.local
[2026-01-15 12:11:21] -rw-------. 1 boincer umatlas   1004083 Jan 15 11:09 agis_schedconf.cvmfs.json
[2026-01-15 12:11:21] -rw-------. 1 boincer umatlas   1516246 Jan 15 11:09 agis_ddmendpoints.agis.ALL.json
[2026-01-15 12:11:21] drwx------. 5 boincer umatlas      4096 Jan 15 11:09 pilot3
[2026-01-15 12:11:21] -rw-r--r--. 1 boincer umatlas      7171 Jan 15 12:02 init_data.xml
[2026-01-15 12:11:21] -rw-------. 1 boincer umatlas 153423079 Jan 15 12:09 HITS.48215263._046800.pool.root.1
[2026-01-15 12:11:21] -rw-r--r--. 1 boincer umatlas       530 Jan 15 12:09 boinc_task_state.xml
[2026-01-15 12:11:21] -rw-------. 1 boincer umatlas      1048 Jan 15 12:09 memory_monitor_summary.json
[2026-01-15 12:11:21] -rw-------. 1 boincer umatlas    318022 Jan 15 12:10 log.48215263._046800.job.log.tgz.1
[2026-01-15 12:11:21] -rw-------. 1 boincer umatlas      7800 Jan 15 12:10 heartbeat.json
[2026-01-15 12:11:21] -rw-------. 1 boincer umatlas        95 Jan 15 12:10 pilot_heartbeat.json
[2026-01-15 12:11:21] -rw-------. 1 boincer umatlas      4825 Jan 15 12:11 pilotlog.txt
[2026-01-15 12:11:21] -rw-r--r--. 1 boincer umatlas      8192 Jan 15 12:11 boinc_mmap_file
[2026-01-15 12:11:21] -rw-------. 1 boincer umatlas    543974 Jan 15 12:11 log.48215263._046800.job.log.1
[2026-01-15 12:11:21] -rw-------. 1 boincer umatlas       357 Jan 15 12:11 output.list
[2026-01-15 12:11:21] -rw-r--r--. 1 boincer umatlas       620 Jan 15 12:11 runtime_log
[2026-01-15 12:11:21] -rw-------. 1 boincer umatlas    880640 Jan 15 12:11 result.tar.gz
[2026-01-15 12:11:21] -rw-------. 1 boincer umatlas       656 Jan 15 12:11 VE2MDmRYU08n9Rq4apOajLDm4fhM0noT9bVo0NGKDme7nKDmM0tbmn.diag
[2026-01-15 12:11:21] -rw-r--r--. 1 boincer umatlas      9337 Jan 15 12:11 runtime_log.err
[2026-01-15 12:11:21] -rw-r--r--. 1 boincer umatlas        27 Jan 15 12:11 wrapper_checkpoint.txt
[2026-01-15 12:11:21] -rw-r--r--. 1 boincer umatlas     22029 Jan 15 12:11 stderr.txt
[2026-01-15 12:11:21] HITS file was successfully produced:
[2026-01-15 12:11:21] -rw-------. 1 boincer umatlas 153423079 Jan 15 12:09 shared/HITS.pool.root.1
[2026-01-15 12:11:21]  *** Contents of shared directory: ***
[2026-01-15 12:11:21] total 737988
[2026-01-15 12:11:21] -rw-r--r--. 2 boincer umatlas 600775391 Jan 15 11:08 ATLAS.root_0
[2026-01-15 12:11:21] -rw-r--r--. 2 boincer umatlas     15847 Jan 15 11:08 start_atlas.sh
[2026-01-15 12:11:21] -rw-r--r--. 2 boincer umatlas    592418 Jan 15 11:08 input.tar.gz
[2026-01-15 12:11:21] -rw-------. 1 boincer umatlas 153423079 Jan 15 12:09 HITS.pool.root.1
[2026-01-15 12:11:21] -rw-------. 1 boincer umatlas    880640 Jan 15 12:11 result.tar.gz
12:11:23 (3229298): run_atlas exited; CPU time 15542.556479
12:11:23 (3229298): called boinc_finish(0)

</stderr_txt>
]]>

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