Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
16:08:57 (1636909): wrapper (7.7.26015): starting
16:08:57 (1636909): wrapper: running run_atlas (--nthreads 12)
[2026-01-16 16:08:57] Arguments: --nthreads 12
[2026-01-16 16:08:57] Threads: 12
[2026-01-16 16:08:57] Checking for CVMFS
[2026-01-16 16:08:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-16 16:08:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-16 16:08:58] Running cvmfs_config stat atlas.cern.ch
[2026-01-16 16:08:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-16 16:08:59] 2.13.3.0 40677 10697 68044 155212 3 240 4050708 4096001 19463 130560 0 88408337 99.982 1160278 229 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-01-16 16:08:59] CVMFS is ok
[2026-01-16 16:08:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-16 16:08:59] Checking for apptainer binary...
[2026-01-16 16:08:59] apptainer is not installed, using version from CVMFS
[2026-01-16 16:08:59] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-16 16:09:01] epyc7v12
[2026-01-16 16:09:01] apptainer works
[2026-01-16 16:09:01] Set ATHENA_PROC_NUMBER=12
[2026-01-16 16:09:01] Set ATHENA_CORE_NUMBER=12
[2026-01-16 16:09:01] Starting ATLAS job with PandaID=6970395828
[2026-01-16 16:09:01] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31423/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-16 17:39:46]  *** The last 200 lines of the pilot log: ***
[2026-01-16 17:39:46] 2026-01-16 17:38:21,925 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-16 17:39:46] 2026-01-16 17:38:21,925 | INFO     | summary of transferred files:
[2026-01-16 17:39:46] 2026-01-16 17:38:21,925 | INFO     |  -- lfn=log.48215263._047799.job.log.tgz.1, status_code=0, status=transferred
[2026-01-16 17:39:46] 2026-01-16 17:38:21,928 | INFO     | stage-out finished correctly
[2026-01-16 17:39:46] 2026-01-16 17:38:22,504 | INFO     | monitor loop #354: job 0:6970395828 is in state 'finished'
[2026-01-16 17:39:46] 2026-01-16 17:38:22,504 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 17:39:46] 2026-01-16 17:38:23,265 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-16 17:39:46] 2026-01-16 17:38:23,393 | INFO     | time since job start (5331s) is within the limit (349056.0s)
[2026-01-16 17:39:46] 2026-01-16 17:38:24,625 | INFO     | job 6970395828 has state=finished
[2026-01-16 17:39:46] 2026-01-16 17:38:24,626 | INFO     | preparing for final server update for job 6970395828 in state='finished'
[2026-01-16 17:39:46] 2026-01-16 17:38:24,626 | INFO     | this job has now completed (state=finished)
[2026-01-16 17:39:46] 2026-01-16 17:38:24,626 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-16 17:39:46] 2026-01-16 17:38:24,626 | INFO     | log transfer has been attempted: DONE
[2026-01-16 17:39:46] 2026-01-16 17:38:24,626 | INFO     | job 6970395828 has finished - writing final server update
[2026-01-16 17:39:46] 2026-01-16 17:38:24,627 | INFO     | total number of processed events: 400 (read)
[2026-01-16 17:39:46] 2026-01-16 17:38:24,630 | INFO     | executing command: lscpu
[2026-01-16 17:39:46] 2026-01-16 17:38:24,789 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-16 17:39:46] 2026-01-16 17:38:25,009 | INFO     | monitor loop #355: job 0:6970395828 is in state 'finished'
[2026-01-16 17:39:46] 2026-01-16 17:38:25,010 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 17:39:46] 2026-01-16 17:38:25,398 | INFO     | time since job start (5333s) is within the limit (349056.0s)
[2026-01-16 17:39:46] 2026-01-16 17:38:27,404 | INFO     | time since job start (5335s) is within the limit (349056.0s)
[2026-01-16 17:39:46] 2026-01-16 17:38:27,512 | INFO     | monitor loop #356: job 0:6970395828 is in state 'finished'
[2026-01-16 17:39:46] 2026-01-16 17:38:27,512 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 17:39:46] 2026-01-16 17:38:29,410 | INFO     | time since job start (5337s) is within the limit (349056.0s)
[2026-01-16 17:39:46] 2026-01-16 17:38:30,015 | INFO     | monitor loop #357: job 0:6970395828 is in state 'finished'
[2026-01-16 17:39:46] 2026-01-16 17:38:30,015 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 17:39:46] 2026-01-16 17:38:31,418 | INFO     | time since job start (5339s) is within the limit (349056.0s)
[2026-01-16 17:39:46] 2026-01-16 17:38:32,524 | INFO     | monitor loop #358: job 0:6970395828 is in state 'finished'
[2026-01-16 17:39:46] 2026-01-16 17:38:32,524 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 17:39:46] 2026-01-16 17:38:33,423 | INFO     | time since job start (5341s) is within the limit (349056.0s)
[2026-01-16 17:39:46] 2026-01-16 17:38:35,027 | INFO     | monitor loop #359: job 0:6970395828 is in state 'finished'
[2026-01-16 17:39:46] 2026-01-16 17:38:35,027 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 17:39:46] 2026-01-16 17:38:35,429 | INFO     | time since job start (5343s) is within the limit (349056.0s)
[2026-01-16 17:39:46] 2026-01-16 17:38:37,437 | INFO     | time since job start (5345s) is within the limit (349056.0s)
[2026-01-16 17:39:46] 2026-01-16 17:38:37,531 | INFO     | monitor loop #360: job 0:6970395828 is in state 'finished'
[2026-01-16 17:39:46] 2026-01-16 17:38:37,531 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 17:39:46] 2026-01-16 17:38:38,096 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-16 17:39:46] 2026-01-16 17:38:38,141 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2398.2919296874993
[2026-01-16 17:39:46] 2026-01-16 17:38:38,173 | INFO     | using path: /opt/boinc/instance_homes/boinc_31423/slots/1/PanDA_Pilot-6970395828/memory_monitor_summary.json (trf name=prmon)
[2026-01-16 17:39:46] 2026-01-16 17:38:38,174 | INFO     | extracted standard info from prmon json
[2026-01-16 17:39:46] 2026-01-16 17:38:38,175 | INFO     | extracted standard memory fields from prmon json
[2026-01-16 17:39:46] 2026-01-16 17:38:38,175 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-16 17:39:46] 2026-01-16 17:38:38,175 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-16 17:39:46] 2026-01-16 17:38:38,175 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-16 17:39:46] 2026-01-16 17:38:38,177 | INFO     | fitting pss+swap vs Time
[2026-01-16 17:39:46] 2026-01-16 17:38:38,178 | INFO     | sum of square deviations: 158737860.0
[2026-01-16 17:39:46] 2026-01-16 17:38:38,178 | INFO     | sum of deviations: 4586730696.5
[2026-01-16 17:39:46] 2026-01-16 17:38:38,178 | INFO     | mean x: 1768582554.5
[2026-01-16 17:39:46] 2026-01-16 17:38:38,178 | INFO     | mean y: 2684443.6125
[2026-01-16 17:39:46] 2026-01-16 17:38:38,179 | INFO     | intersect: -51100511051.27154
[2026-01-16 17:39:46] 2026-01-16 17:38:38,179 | INFO     | chi2: 0.1088138265513997
[2026-01-16 17:39:46] 2026-01-16 17:38:38,179 | INFO     | current memory leak: 28.90 B/s (using 80 data points, chi2=0.11)
[2026-01-16 17:39:46] 2026-01-16 17:38:38,179 | INFO     | could have reported an average CPU frequency of 2400 MHz (6 samples)
[2026-01-16 17:39:46] 2026-01-16 17:38:38,179 | INFO     | ..............................
[2026-01-16 17:39:46] 2026-01-16 17:38:38,180 | INFO     | . Timing measurements:
[2026-01-16 17:39:46] 2026-01-16 17:38:38,180 | INFO     | . get job = 0 s
[2026-01-16 17:39:46] 2026-01-16 17:38:38,180 | INFO     | . initial setup = 2 s
[2026-01-16 17:39:46] 2026-01-16 17:38:38,180 | INFO     | . payload setup = 16 s
[2026-01-16 17:39:46] 2026-01-16 17:38:38,180 | INFO     | . stage-in = 0 s
[2026-01-16 17:39:46] 2026-01-16 17:38:38,180 | INFO     | . payload execution = 5269 s
[2026-01-16 17:39:46] 2026-01-16 17:38:38,180 | INFO     | . stage-out = 1 s
[2026-01-16 17:39:46] 2026-01-16 17:38:38,180 | INFO     | . log creation = 0 s
[2026-01-16 17:39:46] 2026-01-16 17:38:38,180 | INFO     | ..............................
[2026-01-16 17:39:46] 2026-01-16 17:38:38,337 | INFO     | 
[2026-01-16 17:39:46] 2026-01-16 17:38:38,337 | INFO     | job summary report
[2026-01-16 17:39:46] 2026-01-16 17:38:38,337 | INFO     | --------------------------------------------------
[2026-01-16 17:39:46] 2026-01-16 17:38:38,337 | INFO     | PanDA job id: 6970395828
[2026-01-16 17:39:46] 2026-01-16 17:38:38,338 | INFO     | task id: 48215263
[2026-01-16 17:39:46] 2026-01-16 17:38:38,338 | INFO     | errors: (none)
[2026-01-16 17:39:46] 2026-01-16 17:38:38,338 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-16 17:39:46] 2026-01-16 17:38:38,338 | INFO     | pilot state: finished 
[2026-01-16 17:39:46] 2026-01-16 17:38:38,338 | INFO     | transexitcode: 0
[2026-01-16 17:39:46] 2026-01-16 17:38:38,338 | INFO     | exeerrorcode: 0
[2026-01-16 17:39:46] 2026-01-16 17:38:38,338 | INFO     | exeerrordiag: 
[2026-01-16 17:39:46] 2026-01-16 17:38:38,338 | INFO     | exitcode: 0
[2026-01-16 17:39:46] 2026-01-16 17:38:38,338 | INFO     | exitmsg: OK
[2026-01-16 17:39:46] 2026-01-16 17:38:38,338 | INFO     | cpuconsumptiontime: 29403 s
[2026-01-16 17:39:46] 2026-01-16 17:38:38,339 | INFO     | nevents: 400
[2026-01-16 17:39:46] 2026-01-16 17:38:38,339 | INFO     | neventsw: 0
[2026-01-16 17:39:46] 2026-01-16 17:38:38,339 | INFO     | pid: 1648419
[2026-01-16 17:39:46] 2026-01-16 17:38:38,339 | INFO     | pgrp: 1648419
[2026-01-16 17:39:46] 2026-01-16 17:38:38,339 | INFO     | corecount: 12
[2026-01-16 17:39:46] 2026-01-16 17:38:38,339 | INFO     | event service: False
[2026-01-16 17:39:46] 2026-01-16 17:38:38,339 | INFO     | sizes: {0: 2283748, 1: 2284003, 2: 2284031, 12: 2284031, 15: 2284321, 23: 2284349, 5290: 2311185, 5291: 2311184, 5294: 2320284, 5295: 2320340, 5310: 2320534}
[2026-01-16 17:39:46] 2026-01-16 17:38:38,339 | INFO     | --------------------------------------------------
[2026-01-16 17:39:46] 2026-01-16 17:38:38,341 | INFO     | 
[2026-01-16 17:39:46] 2026-01-16 17:38:38,341 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31423/slots/1
[2026-01-16 17:39:46] 2026-01-16 17:38:38,404 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-16 17:39:46] 2026-01-16 17:38:38,406 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-16 17:39:46] 2026-01-16 17:38:38,406 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-16 17:39:46] 2026-01-16 17:38:38,406 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-16 17:39:46] 2026-01-16 17:38:38,406 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-16 17:39:46] 2026-01-16 17:38:38,406 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-16 17:39:46] 2026-01-16 17:38:38,407 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-16 17:39:46] 2026-01-16 17:38:38,407 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-16 17:39:46] 2026-01-16 17:38:38,407 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-16 17:39:46] 2026-01-16 17:38:38,407 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-16 17:39:46] 2026-01-16 17:38:38,407 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-16 17:39:46] 2026-01-16 17:38:38,407 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-16 17:39:46] 2026-01-16 17:38:38,407 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-16 17:39:46] 2026-01-16 17:38:38,407 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-16 17:39:46] 2026-01-16 17:38:38,407 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-16 17:39:46] 2026-01-16 17:38:38,407 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-16 17:39:46] 2026-01-16 17:38:38,407 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-16 17:39:46] 2026-01-16 17:38:38,408 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-16 17:39:46] 2026-01-16 17:38:38,408 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-16 17:39:46] 2026-01-16 17:38:38,408 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-16 17:39:46] 2026-01-16 17:38:38,408 | INFO     | job 6970395828 has completed (purged errors)
[2026-01-16 17:39:46] 2026-01-16 17:38:38,408 | INFO     | overall cleanup function is called
[2026-01-16 17:39:46] 2026-01-16 17:38:39,425 | INFO     | --- collectZombieJob: --- 10, [1648419]
[2026-01-16 17:39:46] 2026-01-16 17:38:39,425 | INFO     | zombie collector waiting for pid 1648419
[2026-01-16 17:39:46] 2026-01-16 17:38:39,425 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-16 17:39:46] 2026-01-16 17:38:39,425 | INFO     | collected zombie processes
[2026-01-16 17:39:46] 2026-01-16 17:38:39,426 | INFO     | will attempt to kill all subprocesses of pid=1648419
[2026-01-16 17:39:46] 2026-01-16 17:38:40,630 | INFO     | process IDs to be killed: [1648419] (in reverse order)
[2026-01-16 17:39:46] 2026-01-16 17:38:41,088 | WARNING  | found no corresponding commands to process id(s)
[2026-01-16 17:39:46] 2026-01-16 17:38:41,091 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-16 17:39:46] 2026-01-16 17:38:41,127 | INFO     | did not find any defunct processes belonging to 1648419
[2026-01-16 17:39:46] 2026-01-16 17:38:41,165 | INFO     | did not find any defunct processes belonging to 1648419
[2026-01-16 17:39:46] 2026-01-16 17:38:41,165 | INFO     | ready for new job
[2026-01-16 17:39:46] 2026-01-16 17:38:41,166 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-16 17:39:46] 2026-01-16 17:38:41,170 | INFO     | ***************************************
[2026-01-16 17:39:46] 2026-01-16 17:38:41,170 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-16 17:39:46] 2026-01-16 17:38:41,170 | INFO     | ***************************************
[2026-01-16 17:39:46] 2026-01-16 17:38:41,173 | INFO     | 
[2026-01-16 17:39:46] 2026-01-16 17:38:41,193 | INFO     | architecture information:
[2026-01-16 17:39:46] 2026-01-16 17:38:41,197 | INFO     | executing command: cat /etc/os-release
[2026-01-16 17:39:46] 2026-01-16 17:38:41,249 | INFO     | cat /etc/os-release:
[2026-01-16 17:39:46] NAME="CentOS Linux"
[2026-01-16 17:39:46] VERSION="7 (Core)"
[2026-01-16 17:39:46] ID="centos"
[2026-01-16 17:39:46] ID_LIKE="rhel fedora"
[2026-01-16 17:39:46] VERSION_ID="7"
[2026-01-16 17:39:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-16 17:39:46] ANSI_COLOR="0;31"
[2026-01-16 17:39:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-16 17:39:46] HOME_URL="https://www.centos.org/"
[2026-01-16 17:39:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-16 17:39:46] 
[2026-01-16 17:39:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-16 17:39:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-16 17:39:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-16 17:39:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-16 17:39:46] 
[2026-01-16 17:39:46] 2026-01-16 17:38:41,249 | INFO     | ***************************************
[2026-01-16 17:39:46] 2026-01-16 17:38:41,752 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31423/slots/1
[2026-01-16 17:39:46] 2026-01-16 17:38:41,795 | INFO     | sufficient remaining disk space (319505301504 B)
[2026-01-16 17:39:46] 2026-01-16 17:38:41,795 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-16 17:39:46] 2026-01-16 17:38:41,796 | INFO     | current server update state: UPDATING_FINAL
[2026-01-16 17:39:46] 2026-01-16 17:38:41,796 | INFO     | update_server=False
[2026-01-16 17:39:46] 2026-01-16 17:38:41,796 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-16 17:39:46] 2026-01-16 17:38:41,796 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-16 17:39:46] 2026-01-16 17:38:41,796 | INFO     | aborting loop
[2026-01-16 17:39:46] 2026-01-16 17:38:42,197 | INFO     | all data control threads have been joined
[2026-01-16 17:39:46] 2026-01-16 17:38:42,197 | INFO     | all payload control threads have been joined
[2026-01-16 17:39:46] 2026-01-16 17:38:42,593 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-16 17:39:46] 2026-01-16 17:38:42,801 | INFO     | [job] retrieve thread has finished
[2026-01-16 17:39:46] 2026-01-16 17:38:42,802 | INFO     | [job] job monitor thread has finished
[2026-01-16 17:39:46] 2026-01-16 17:38:42,859 | INFO     | [job] create_data_payload thread has finished
[2026-01-16 17:39:46] 2026-01-16 17:38:43,010 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-16 17:39:46] 2026-01-16 17:38:43,133 | INFO     | all job control threads have been joined
[2026-01-16 17:39:46] 2026-01-16 17:38:43,202 | INFO     | [payload] control thread has finished
[2026-01-16 17:39:46] 2026-01-16 17:38:43,203 | INFO     | [data] control thread has finished
[2026-01-16 17:39:46] 2026-01-16 17:38:43,342 | INFO     | [payload] validate_pre thread has finished
[2026-01-16 17:39:46] 2026-01-16 17:38:43,352 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-16 17:39:46] 2026-01-16 17:38:43,367 | INFO     | [data] copytool_in thread has finished
[2026-01-16 17:39:46] 2026-01-16 17:38:43,653 | INFO     | [payload] failed_post thread has finished
[2026-01-16 17:39:46] 2026-01-16 17:38:43,852 | INFO     | [job] validate thread has finished
[2026-01-16 17:39:46] 2026-01-16 17:38:43,852 | INFO     | [payload] execute_payloads thread has finished
[2026-01-16 17:39:46] 2026-01-16 17:38:44,138 | INFO     | [job] control thread has finished
[2026-01-16 17:39:46] 2026-01-16 17:38:44,357 | INFO     | [job] queue monitor thread has finished
[2026-01-16 17:39:46] 2026-01-16 17:38:44,391 | INFO     | [payload] validate_post thread has finished
[2026-01-16 17:39:46] 2026-01-16 17:38:44,600 | INFO     | [data] copytool_out thread has finished
[2026-01-16 17:39:46] 2026-01-16 17:38:47,018 | INFO     | [data] queue_monitor thread has finished
[2026-01-16 17:39:46] 2026-01-16 17:38:52,829 | INFO     | job.realtimelogging is not enabled
[2026-01-16 17:39:46] 2026-01-16 17:38:53,834 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-16 17:39:46] 2026-01-16 17:39:11,783 | INFO     | PID=1641113 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-16 17:39:46] 2026-01-16 17:39:11,783 | INFO     | .. there are 21 such processes running
[2026-01-16 17:39:46] 2026-01-16 17:39:11,784 | INFO     | found 0 job(s) in 20 queues
[2026-01-16 17:39:46] 2026-01-16 17:39:11,784 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-16 17:39:46] 2026-01-16 17:39:11,784 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-16 17:39:46] 2026-01-16 17:39:27,715 [wrapper] supervise_pilot (15 min periods counter: 7)
[2026-01-16 17:39:46] 2026-01-16 17:39:40,761 | INFO     | [monitor] cgroup control has ended
[2026-01-16 17:39:46] 2026-01-16 17:39:41,064 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 129170794829632)>', '<ExcThread(monitor, started 129170252224256)>']
[2026-01-16 17:39:46] 2026-01-16 17:39:41,942 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-16 17:39:46] 2026-01-16 17:39:41,942 | INFO     | [monitor] control thread has ended
[2026-01-16 17:39:46] 2026-01-16 17:39:46,089 | INFO     | all workflow threads have been joined
[2026-01-16 17:39:46] 2026-01-16 17:39:46,089 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-16 17:39:46] 2026-01-16 17:39:46,090 | INFO     | traces error code: 0
[2026-01-16 17:39:46] 2026-01-16 17:39:46,090 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-16 17:39:46] 2026-01-16 17:39:46,416 [wrapper] ==== pilot stdout END ====
[2026-01-16 17:39:46] 2026-01-16 17:39:46,427 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-16 17:39:46] 2026-01-16 17:39:46,436 [wrapper] pilotpid: 1641113
[2026-01-16 17:39:46] 2026-01-16 17:39:46,444 [wrapper] Pilot exit status: 0
[2026-01-16 17:39:46] 2026-01-16 17:39:46,484 [wrapper] pandaids: 6970395828
[2026-01-16 17:39:46] 2026-01-16 17:39:46,643 [wrapper] cleanup supervisor_pilot 2144721 1641114
[2026-01-16 17:39:46] 2026-01-16 17:39:46,659 [wrapper] Test setup, not cleaning
[2026-01-16 17:39:46] 2026-01-16 17:39:46,667 [wrapper] apfmon messages muted
[2026-01-16 17:39:46] 2026-01-16 17:39:46,673 [wrapper] ==== wrapper stdout END ====
[2026-01-16 17:39:46] 2026-01-16 17:39:46,683 [wrapper] ==== wrapper stderr END ====
[2026-01-16 17:39:46]  *** Error codes and diagnostics ***
[2026-01-16 17:39:46]     "exeErrorCode": 0,
[2026-01-16 17:39:46]     "exeErrorDiag": "",
[2026-01-16 17:39:46]     "pilotErrorCode": 0,
[2026-01-16 17:39:46]     "pilotErrorDiag": "",
[2026-01-16 17:39:46]  *** Listing of results directory ***
[2026-01-16 17:39:46] total 730384
[2026-01-16 17:39:46] -rw-r--r-- 1 boinc boinc      5112 Jan 15 06:52 queuedata.json
[2026-01-16 17:39:46] -rw-r--r-- 1 boinc boinc    579449 Jan 15 06:52 pilot3.tar.gz
[2026-01-16 17:39:46] -rwx------ 1 boinc boinc     36322 Jan 15 06:53 runpilot2-wrapper.sh
[2026-01-16 17:39:46] -rw-rw-r-- 1 boinc boinc       100 Jan 16 16:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-16 17:39:46] -rwxr-xr-x 1 boinc boinc      7986 Jan 16 16:08 run_atlas
[2026-01-16 17:39:46] -rw-rw-r-- 1 boinc boinc       105 Jan 16 16:08 job.xml
[2026-01-16 17:39:46] -rw-r--r-- 2 boinc boinc 592241217 Jan 16 16:08 EVNT.32794306._001855.pool.root.1
[2026-01-16 17:39:46] drwxrwx--x 2 boinc boinc      4096 Jan 16 16:08 shared
[2026-01-16 17:39:46] -rw-r--r-- 2 boinc boinc    592405 Jan 16 16:08 input.tar.gz
[2026-01-16 17:39:46] -rw-r--r-- 2 boinc boinc     15847 Jan 16 16:08 start_atlas.sh
[2026-01-16 17:39:46] -rw-rw-r-- 1 boinc boinc      6556 Jan 16 16:08 init_data.xml
[2026-01-16 17:39:46] -rw-rw-r-- 1 boinc boinc         0 Jan 16 16:08 boinc_setup_complete
[2026-01-16 17:39:46] -rw-rw-r-- 1 boinc boinc         0 Jan 16 16:08 boinc_lockfile
[2026-01-16 17:39:46] -rw-rw-r-- 1 boinc boinc      2509 Jan 16 16:09 pandaJob.out
[2026-01-16 17:39:46] -rw------- 1 boinc boinc   1004099 Jan 16 16:09 agis_schedconf.cvmfs.json
[2026-01-16 17:39:46] -rw------- 1 boinc boinc   1516246 Jan 16 16:09 agis_ddmendpoints.agis.ALL.json
[2026-01-16 17:39:46] drwx------ 5 boinc boinc      4096 Jan 16 16:09 pilot3
[2026-01-16 17:39:46] -rw------- 1 boinc boinc 149445661 Jan 16 17:37 HITS.48215263._047799.pool.root.1
[2026-01-16 17:39:46] -rw-rw-r-- 1 boinc boinc       530 Jan 16 17:37 boinc_task_state.xml
[2026-01-16 17:39:46] -rw------- 1 boinc boinc        95 Jan 16 17:38 pilot_heartbeat.json
[2026-01-16 17:39:46] -rw------- 1 boinc boinc      1020 Jan 16 17:38 memory_monitor_summary.json
[2026-01-16 17:39:46] -rw------- 1 boinc boinc    395989 Jan 16 17:38 log.48215263._047799.job.log.tgz.1
[2026-01-16 17:39:46] -rw------- 1 boinc boinc      7726 Jan 16 17:38 heartbeat.json
[2026-01-16 17:39:46] -rw-rw-r-- 1 boinc boinc        27 Jan 16 17:39 wrapper_checkpoint.txt
[2026-01-16 17:39:46] -rw-rw-r-- 1 boinc boinc      8192 Jan 16 17:39 boinc_mmap_file
[2026-01-16 17:39:46] -rw------- 1 boinc boinc      4920 Jan 16 17:39 pilotlog.txt
[2026-01-16 17:39:46] -rw------- 1 boinc boinc    749731 Jan 16 17:39 log.48215263._047799.job.log.1
[2026-01-16 17:39:46] -rw------- 1 boinc boinc       357 Jan 16 17:39 output.list
[2026-01-16 17:39:46] -rw-rw-r-- 1 boinc boinc       620 Jan 16 17:39 runtime_log
[2026-01-16 17:39:46] -rw------- 1 boinc boinc   1167360 Jan 16 17:39 result.tar.gz
[2026-01-16 17:39:46] -rw-rw-r-- 1 boinc boinc      9167 Jan 16 17:39 runtime_log.err
[2026-01-16 17:39:46] -rw------- 1 boinc boinc       652 Jan 16 17:39 4uxNDmjPW08n9Rq4apOajLDm4fhM0noT9bVo0NGKDm9AoKDm4MB9tn.diag
[2026-01-16 17:39:46] -rw-rw-r-- 1 boinc boinc     22046 Jan 16 17:39 stderr.txt
[2026-01-16 17:39:46] HITS file was successfully produced:
[2026-01-16 17:39:46] -rw------- 1 boinc boinc 149445661 Jan 16 17:37 shared/HITS.pool.root.1
[2026-01-16 17:39:46]  *** Contents of shared directory: ***
[2026-01-16 17:39:46] total 726052
[2026-01-16 17:39:46] -rw-r--r-- 2 boinc boinc 592241217 Jan 16 16:08 ATLAS.root_0
[2026-01-16 17:39:46] -rw-r--r-- 2 boinc boinc    592405 Jan 16 16:08 input.tar.gz
[2026-01-16 17:39:46] -rw-r--r-- 2 boinc boinc     15847 Jan 16 16:08 start_atlas.sh
[2026-01-16 17:39:46] -rw------- 1 boinc boinc 149445661 Jan 16 17:37 HITS.pool.root.1
[2026-01-16 17:39:46] -rw------- 1 boinc boinc   1167360 Jan 16 17:39 result.tar.gz
17:39:48 (1636909): run_atlas exited; CPU time 29699.763157
17:39:48 (1636909): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN