Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
09:24:21 (39503): wrapper (7.7.26015): starting
09:24:21 (39503): wrapper: running run_atlas (--nthreads 12)
[2026-01-16 09:24:21] Arguments: --nthreads 12
[2026-01-16 09:24:21] Threads: 12
[2026-01-16 09:24:21] Checking for CVMFS
[2026-01-16 09:24:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-16 09:24:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-16 09:24:21] Running cvmfs_config stat atlas.cern.ch
[2026-01-16 09:24:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-16 09:24:22] 2.12.7.0 3292043 5698 70524 155201 2 103 4006638 4096000 1166 130560 0 2876987 99.739 816032 124 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
[2026-01-16 09:24:22] CVMFS is ok
[2026-01-16 09:24:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-16 09:24:22] Checking for apptainer binary...
[2026-01-16 09:24:22] apptainer is not installed, using version from CVMFS
[2026-01-16 09:24:22] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-16 09:24:22] lithium
[2026-01-16 09:24:22] apptainer works
[2026-01-16 09:24:22] Set ATHENA_PROC_NUMBER=12
[2026-01-16 09:24:22] Set ATHENA_CORE_NUMBER=12
[2026-01-16 09:24:22] Starting ATLAS job with PandaID=6970396437
[2026-01-16 09:24:22] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-16 10:37:42]  *** The last 200 lines of the pilot log: ***
[2026-01-16 10:37:42] 2026-01-16 09:36:20,977 | INFO     | monitor loop #333: job 0:6970396437 is in state 'finished'
[2026-01-16 10:37:42] 2026-01-16 09:36:20,977 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 10:37:42] 2026-01-16 09:36:22,853 | INFO     | time since job start (4312s) is within the limit (349056.0s)
[2026-01-16 10:37:42] 2026-01-16 09:36:23,480 | INFO     | monitor loop #334: job 0:6970396437 is in state 'finished'
[2026-01-16 10:37:42] 2026-01-16 09:36:23,480 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 10:37:42] 2026-01-16 09:36:24,859 | INFO     | time since job start (4314s) is within the limit (349056.0s)
[2026-01-16 10:37:42] 2026-01-16 09:36:25,981 | INFO     | monitor loop #335: job 0:6970396437 is in state 'finished'
[2026-01-16 10:37:42] 2026-01-16 09:36:25,981 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 10:37:42] 2026-01-16 09:36:26,861 | INFO     | time since job start (4316s) is within the limit (349056.0s)
[2026-01-16 10:37:42] 2026-01-16 09:36:28,484 | INFO     | monitor loop #336: job 0:6970396437 is in state 'finished'
[2026-01-16 10:37:42] 2026-01-16 09:36:28,484 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 10:37:42] 2026-01-16 09:36:28,866 | INFO     | time since job start (4318s) is within the limit (349056.0s)
[2026-01-16 10:37:42] 2026-01-16 09:36:30,872 | INFO     | time since job start (4320s) is within the limit (349056.0s)
[2026-01-16 10:37:42] 2026-01-16 09:36:30,987 | INFO     | monitor loop #337: job 0:6970396437 is in state 'finished'
[2026-01-16 10:37:42] 2026-01-16 09:36:30,987 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 10:37:42] 2026-01-16 09:36:32,878 | INFO     | time since job start (4322s) is within the limit (349056.0s)
[2026-01-16 10:37:42] 2026-01-16 09:36:33,490 | INFO     | monitor loop #338: job 0:6970396437 is in state 'finished'
[2026-01-16 10:37:42] 2026-01-16 09:36:33,491 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 10:37:42] 2026-01-16 09:36:34,883 | INFO     | time since job start (4324s) is within the limit (349056.0s)
[2026-01-16 10:37:42] 2026-01-16 09:36:35,994 | INFO     | monitor loop #339: job 0:6970396437 is in state 'finished'
[2026-01-16 10:37:42] 2026-01-16 09:36:35,994 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 10:37:42] 2026-01-16 09:36:36,885 | INFO     | time since job start (4326s) is within the limit (349056.0s)
[2026-01-16 10:37:42] 2026-01-16 09:36:38,497 | INFO     | monitor loop #340: job 0:6970396437 is in state 'finished'
[2026-01-16 10:37:42] 2026-01-16 09:36:38,497 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 10:37:42] 2026-01-16 09:36:38,890 | INFO     | time since job start (4328s) is within the limit (349056.0s)
[2026-01-16 10:37:42] 2026-01-16 09:36:40,893 | INFO     | time since job start (4330s) is within the limit (349056.0s)
[2026-01-16 10:37:42] 2026-01-16 09:36:41,000 | INFO     | monitor loop #341: job 0:6970396437 is in state 'finished'
[2026-01-16 10:37:42] 2026-01-16 09:36:41,000 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 10:37:42] 2026-01-16 09:36:42,005 | INFO     | PID=43309 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-16 10:37:42] 2026-01-16 09:36:43,005 | INFO     | time since job start (4333s) is within the limit (349056.0s)
[2026-01-16 10:37:42] 2026-01-16 09:36:43,503 | INFO     | monitor loop #342: job 0:6970396437 is in state 'finished'
[2026-01-16 10:37:42] 2026-01-16 09:36:43,503 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 10:37:42] 2026-01-16 09:36:45,011 | INFO     | time since job start (4335s) is within the limit (349056.0s)
[2026-01-16 10:37:42] 2026-01-16 09:36:46,006 | INFO     | monitor loop #343: job 0:6970396437 is in state 'finished'
[2026-01-16 10:37:42] 2026-01-16 09:36:46,007 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 10:37:42] 2026-01-16 09:36:47,016 | INFO     | time since job start (4337s) is within the limit (349056.0s)
[2026-01-16 10:37:42] 2026-01-16 09:36:48,510 | INFO     | monitor loop #344: job 0:6970396437 is in state 'finished'
[2026-01-16 10:37:42] 2026-01-16 09:36:48,510 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 10:37:42] 2026-01-16 09:36:49,021 | INFO     | time since job start (4339s) is within the limit (349056.0s)
[2026-01-16 10:37:42] 2026-01-16 09:36:50,576 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-16 10:37:42] 2026-01-16 09:36:50,577 | INFO     | found 8 cores (4 cores per socket, 2 sockets) HT, CPU MHz: 2808.9714375
[2026-01-16 10:37:42] 2026-01-16 09:36:50,579 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6970396437/memory_monitor_summary.json (trf name=prmon)
[2026-01-16 10:37:42] 2026-01-16 09:36:50,580 | INFO     | extracted standard info from prmon json
[2026-01-16 10:37:42] 2026-01-16 09:36:50,580 | INFO     | extracted standard memory fields from prmon json
[2026-01-16 10:37:42] 2026-01-16 09:36:50,580 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-16 10:37:42] 2026-01-16 09:36:50,580 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-16 10:37:42] 2026-01-16 09:36:50,580 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-16 10:37:42] 2026-01-16 09:36:50,582 | INFO     | fitting pss+swap vs Time
[2026-01-16 10:37:42] 2026-01-16 09:36:50,582 | INFO     | sum of square deviations: 77515872.0
[2026-01-16 10:37:42] 2026-01-16 09:36:50,582 | INFO     | sum of deviations: -9455170312.000004
[2026-01-16 10:37:42] 2026-01-16 09:36:50,582 | INFO     | mean x: 1768554088.0
[2026-01-16 10:37:42] 2026-01-16 09:36:50,582 | INFO     | mean y: 3054804.253968254
[2026-01-16 10:37:42] 2026-01-16 09:36:50,583 | INFO     | intersect: 215726359936.1867
[2026-01-16 10:37:42] 2026-01-16 09:36:50,583 | INFO     | chi2: 0.11625347776442088
[2026-01-16 10:37:42] 2026-01-16 09:36:50,583 | INFO     | current memory leak: -121.98 B/s (using 63 data points, chi2=0.12)
[2026-01-16 10:37:42] 2026-01-16 09:36:50,583 | INFO     | could have reported an average CPU frequency of 2844 MHz (6 samples)
[2026-01-16 10:37:42] 2026-01-16 09:36:50,583 | INFO     | ..............................
[2026-01-16 10:37:42] 2026-01-16 09:36:50,583 | INFO     | . Timing measurements:
[2026-01-16 10:37:42] 2026-01-16 09:36:50,583 | INFO     | . get job = 0 s
[2026-01-16 10:37:42] 2026-01-16 09:36:50,584 | INFO     | . initial setup = 1 s
[2026-01-16 10:37:42] 2026-01-16 09:36:50,584 | INFO     | . payload setup = 4 s
[2026-01-16 10:37:42] 2026-01-16 09:36:50,584 | INFO     | . stage-in = 0 s
[2026-01-16 10:37:42] 2026-01-16 09:36:50,584 | INFO     | . payload execution = 4239 s
[2026-01-16 10:37:42] 2026-01-16 09:36:50,584 | INFO     | . stage-out = 0 s
[2026-01-16 10:37:42] 2026-01-16 09:36:50,584 | INFO     | . log creation = 0 s
[2026-01-16 10:37:42] 2026-01-16 09:36:50,584 | INFO     | ..............................
[2026-01-16 10:37:42] 2026-01-16 09:36:50,821 | INFO     | 
[2026-01-16 10:37:42] 2026-01-16 09:36:50,821 | INFO     | job summary report
[2026-01-16 10:37:42] 2026-01-16 09:36:50,821 | INFO     | --------------------------------------------------
[2026-01-16 10:37:42] 2026-01-16 09:36:50,821 | INFO     | PanDA job id: 6970396437
[2026-01-16 10:37:42] 2026-01-16 09:36:50,821 | INFO     | task id: 48215263
[2026-01-16 10:37:42] 2026-01-16 09:36:50,821 | INFO     | errors: (none)
[2026-01-16 10:37:42] 2026-01-16 09:36:50,821 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-16 10:37:42] 2026-01-16 09:36:50,822 | INFO     | pilot state: finished 
[2026-01-16 10:37:42] 2026-01-16 09:36:50,822 | INFO     | transexitcode: 0
[2026-01-16 10:37:42] 2026-01-16 09:36:50,822 | INFO     | exeerrorcode: 0
[2026-01-16 10:37:42] 2026-01-16 09:36:50,822 | INFO     | exeerrordiag: 
[2026-01-16 10:37:42] 2026-01-16 09:36:50,822 | INFO     | exitcode: 0
[2026-01-16 10:37:42] 2026-01-16 09:36:50,822 | INFO     | exitmsg: OK
[2026-01-16 10:37:42] 2026-01-16 09:36:50,822 | INFO     | cpuconsumptiontime: 47428 s
[2026-01-16 10:37:42] 2026-01-16 09:36:50,822 | INFO     | nevents: 400
[2026-01-16 10:37:42] 2026-01-16 09:36:50,822 | INFO     | neventsw: 0
[2026-01-16 10:37:42] 2026-01-16 09:36:50,822 | INFO     | pid: 49902
[2026-01-16 10:37:42] 2026-01-16 09:36:50,822 | INFO     | pgrp: 49902
[2026-01-16 10:37:42] 2026-01-16 09:36:50,823 | INFO     | corecount: 12
[2026-01-16 10:37:42] 2026-01-16 09:36:50,823 | INFO     | event service: False
[2026-01-16 10:37:42] 2026-01-16 09:36:50,823 | INFO     | sizes: {0: 2283957, 3: 2284219, 11: 2284247, 4247: 2310281, 4248: 2319349, 4326: 2319487}
[2026-01-16 10:37:42] 2026-01-16 09:36:50,823 | INFO     | --------------------------------------------------
[2026-01-16 10:37:42] 2026-01-16 09:36:50,823 | INFO     | 
[2026-01-16 10:37:42] 2026-01-16 09:36:50,823 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2026-01-16 10:37:42] 2026-01-16 09:36:50,837 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-16 10:37:42] 2026-01-16 09:36:50,837 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-16 10:37:42] 2026-01-16 09:36:50,837 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-16 10:37:42] 2026-01-16 09:36:50,838 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-16 10:37:42] 2026-01-16 09:36:50,838 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-16 10:37:42] 2026-01-16 09:36:50,838 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-16 10:37:42] 2026-01-16 09:36:50,838 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-16 10:37:42] 2026-01-16 09:36:50,838 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-16 10:37:42] 2026-01-16 09:36:50,838 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-16 10:37:42] 2026-01-16 09:36:50,838 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-16 10:37:42] 2026-01-16 09:36:50,838 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-16 10:37:42] 2026-01-16 09:36:50,838 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-16 10:37:42] 2026-01-16 09:36:50,839 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-16 10:37:42] 2026-01-16 09:36:50,839 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-16 10:37:42] 2026-01-16 09:36:50,839 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-16 10:37:42] 2026-01-16 09:36:50,839 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-16 10:37:42] 2026-01-16 09:36:50,839 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-16 10:37:42] 2026-01-16 09:36:50,839 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-16 10:37:42] 2026-01-16 09:36:50,839 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-16 10:37:42] 2026-01-16 09:36:50,839 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-16 10:37:42] 2026-01-16 09:36:50,839 | INFO     | job 6970396437 has completed (purged errors)
[2026-01-16 10:37:42] 2026-01-16 09:36:50,839 | INFO     | overall cleanup function is called
[2026-01-16 10:37:42] 2026-01-16 09:36:51,847 | INFO     | --- collectZombieJob: --- 10, [49902]
[2026-01-16 10:37:42] 2026-01-16 09:36:51,847 | INFO     | zombie collector waiting for pid 49902
[2026-01-16 10:37:42] 2026-01-16 09:36:51,847 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-16 10:37:42] 2026-01-16 09:36:51,847 | INFO     | collected zombie processes
[2026-01-16 10:37:42] 2026-01-16 09:36:51,847 | INFO     | will attempt to kill all subprocesses of pid=49902
[2026-01-16 10:37:42] 2026-01-16 09:36:51,931 | INFO     | process IDs to be killed: [49902] (in reverse order)
[2026-01-16 10:37:42] 2026-01-16 09:36:51,973 | WARNING  | found no corresponding commands to process id(s)
[2026-01-16 10:37:42] 2026-01-16 09:36:51,974 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-16 10:37:42] 2026-01-16 09:36:51,976 | INFO     | did not find any defunct processes belonging to 49902
[2026-01-16 10:37:42] 2026-01-16 09:36:51,979 | INFO     | did not find any defunct processes belonging to 49902
[2026-01-16 10:37:42] 2026-01-16 09:36:51,979 | INFO     | ready for new job
[2026-01-16 10:37:42] 2026-01-16 09:36:51,979 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-16 10:37:42] 2026-01-16 09:36:51,980 | INFO     | ***************************************
[2026-01-16 10:37:42] 2026-01-16 09:36:51,980 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-16 10:37:42] 2026-01-16 09:36:51,980 | INFO     | ***************************************
[2026-01-16 10:37:42] 2026-01-16 09:36:51,981 | INFO     | 
[2026-01-16 10:37:42] 2026-01-16 09:36:52,002 | INFO     | architecture information:
[2026-01-16 10:37:42] 2026-01-16 09:36:52,003 | INFO     | executing command: cat /etc/os-release
[2026-01-16 10:37:42] 2026-01-16 09:36:52,012 | INFO     | cat /etc/os-release:
[2026-01-16 10:37:42] NAME="CentOS Linux"
[2026-01-16 10:37:42] VERSION="7 (Core)"
[2026-01-16 10:37:42] ID="centos"
[2026-01-16 10:37:42] ID_LIKE="rhel fedora"
[2026-01-16 10:37:42] VERSION_ID="7"
[2026-01-16 10:37:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-16 10:37:42] ANSI_COLOR="0;31"
[2026-01-16 10:37:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-16 10:37:42] HOME_URL="https://www.centos.org/"
[2026-01-16 10:37:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-16 10:37:42] 
[2026-01-16 10:37:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-16 10:37:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-16 10:37:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-16 10:37:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-16 10:37:42] 
[2026-01-16 10:37:42] 2026-01-16 09:36:52,012 | INFO     | ***************************************
[2026-01-16 10:37:42] 2026-01-16 09:36:52,515 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2026-01-16 10:37:42] 2026-01-16 09:36:52,525 | INFO     | sufficient remaining disk space (8654946304 B)
[2026-01-16 10:37:42] 2026-01-16 09:36:52,526 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-16 10:37:42] 2026-01-16 09:36:52,526 | INFO     | current server update state: UPDATING_FINAL
[2026-01-16 10:37:42] 2026-01-16 09:36:52,526 | INFO     | update_server=False
[2026-01-16 10:37:42] 2026-01-16 09:36:52,526 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-16 10:37:42] 2026-01-16 09:36:52,526 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-16 10:37:42] 2026-01-16 09:36:52,526 | INFO     | aborting loop
[2026-01-16 10:37:42] 2026-01-16 09:36:52,527 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-16 10:37:42] 2026-01-16 09:36:52,883 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-16 10:37:42] 2026-01-16 09:36:53,483 | INFO     | all data control threads have been joined
[2026-01-16 10:37:42] 2026-01-16 09:36:53,505 | INFO     | all payload control threads have been joined
[2026-01-16 10:37:42] 2026-01-16 09:36:53,529 | INFO     | [job] queue monitor thread has finished
[2026-01-16 10:37:42] 2026-01-16 09:36:53,531 | INFO     | [job] retrieve thread has finished
[2026-01-16 10:37:42] 2026-01-16 09:36:53,532 | INFO     | [job] job monitor thread has finished
[2026-01-16 10:37:42] 2026-01-16 09:36:53,645 | INFO     | [job] create_data_payload thread has finished
[2026-01-16 10:37:42] 2026-01-16 09:36:53,661 | INFO     | [data] copytool_in thread has finished
[2026-01-16 10:37:42] 2026-01-16 09:36:53,700 | INFO     | [payload] validate_pre thread has finished
[2026-01-16 10:37:42] 2026-01-16 09:36:53,701 | INFO     | [payload] execute_payloads thread has finished
[2026-01-16 10:37:42] 2026-01-16 09:36:53,884 | INFO     | all job control threads have been joined
[2026-01-16 10:37:42] 2026-01-16 09:36:54,218 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-16 10:37:42] 2026-01-16 09:36:54,415 | INFO     | [payload] validate_post thread has finished
[2026-01-16 10:37:42] 2026-01-16 09:36:54,488 | INFO     | [data] control thread has finished
[2026-01-16 10:37:42] 2026-01-16 09:36:54,509 | INFO     | [payload] control thread has finished
[2026-01-16 10:37:42] 2026-01-16 09:36:54,776 | INFO     | [payload] failed_post thread has finished
[2026-01-16 10:37:42] 2026-01-16 09:36:54,886 | INFO     | [job] validate thread has finished
[2026-01-16 10:37:42] 2026-01-16 09:36:54,889 | INFO     | [job] control thread has finished
[2026-01-16 10:37:42] 2026-01-16 09:36:54,889 | INFO     | [data] copytool_out thread has finished
[2026-01-16 10:37:42] 2026-01-16 09:36:54,920 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-16 10:37:42] 2026-01-16 09:36:58,926 | INFO     | [data] queue_monitor thread has finished
[2026-01-16 10:37:42] 2026-01-16 09:37:22,215 | INFO     | PID=43309 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-16 10:37:42] 2026-01-16 09:37:22,216 | INFO     | found 0 job(s) in 20 queues
[2026-01-16 10:37:42] 2026-01-16 09:37:22,216 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-16 10:37:42] 2026-01-16 09:37:22,216 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-16 10:37:42] 2026-01-16 09:37:36,698 | INFO     | [monitor] cgroup control has ended
[2026-01-16 10:37:42] 2026-01-16 09:37:37,412 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139787376486208)>', '<ExcThread(monitor, started 139786924832512)>']
[2026-01-16 10:37:42] 2026-01-16 09:37:38,294 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-16 10:37:42] 2026-01-16 09:37:38,294 | INFO     | [monitor] control thread has ended
[2026-01-16 10:37:42] 2026-01-16 09:37:42,437 | INFO     | all workflow threads have been joined
[2026-01-16 10:37:42] 2026-01-16 09:37:42,437 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-16 10:37:42] 2026-01-16 09:37:42,438 | INFO     | traces error code: 0
[2026-01-16 10:37:42] 2026-01-16 09:37:42,438 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-16 10:37:42] 2026-01-16 09:37:42,518 [wrapper] ==== pilot stdout END ====
[2026-01-16 10:37:42] 2026-01-16 09:37:42,520 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-16 10:37:42] 2026-01-16 09:37:42,522 [wrapper] pilotpid: 43309
[2026-01-16 10:37:42] 2026-01-16 09:37:42,524 [wrapper] Pilot exit status: 0
[2026-01-16 10:37:42] 2026-01-16 09:37:42,531 [wrapper] pandaids: 6970396437
[2026-01-16 10:37:42] 2026-01-16 09:37:42,553 [wrapper] cleanup supervisor_pilot   59769 43310
[2026-01-16 10:37:42] 2026-01-16 09:37:42,556 [wrapper] Test setup, not cleaning
[2026-01-16 10:37:42] 2026-01-16 09:37:42,558 [wrapper] apfmon messages muted
[2026-01-16 10:37:42] 2026-01-16 09:37:42,559 [wrapper] ==== wrapper stdout END ====
[2026-01-16 10:37:42] 2026-01-16 09:37:42,561 [wrapper] ==== wrapper stderr END ====
[2026-01-16 10:37:42]  *** Error codes and diagnostics ***
[2026-01-16 10:37:42]     "exeErrorCode": 0,
[2026-01-16 10:37:42]     "exeErrorDiag": "",
[2026-01-16 10:37:42]     "pilotErrorCode": 0,
[2026-01-16 10:37:42]     "pilotErrorDiag": "",
[2026-01-16 10:37:42]  *** Listing of results directory ***
[2026-01-16 10:37:42] total 738580
[2026-01-16 10:37:42] -rwx------ 1 boinc boinc     36322 Jan 15 07:52 runpilot2-wrapper.sh
[2026-01-16 10:37:42] -rw-r--r-- 1 boinc boinc      5112 Jan 15 07:52 queuedata.json
[2026-01-16 10:37:42] -rw-r--r-- 1 boinc boinc    579449 Jan 15 07:52 pilot3.tar.gz
[2026-01-16 10:37:42] -rw-r--r-- 1 boinc boinc       100 Jan 16 09:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-16 10:37:42] -rwxr-xr-x 1 boinc boinc      7986 Jan 16 09:24 run_atlas
[2026-01-16 10:37:42] -rw-r--r-- 1 boinc boinc       105 Jan 16 09:24 job.xml
[2026-01-16 10:37:42] -rw-r--r-- 2 boinc boinc     15847 Jan 16 09:24 start_atlas.sh
[2026-01-16 10:37:42] drwxrwx--x 2 boinc boinc      4096 Jan 16 09:24 shared
[2026-01-16 10:37:42] -rw-r--r-- 2 boinc boinc    592402 Jan 16 09:24 input.tar.gz
[2026-01-16 10:37:42] -rw-r--r-- 1 boinc boinc      6044 Jan 16 09:24 init_data.xml
[2026-01-16 10:37:42] -rw-r--r-- 2 boinc boinc 596866652 Jan 16 09:24 EVNT.32794306._001869.pool.root.1
[2026-01-16 10:37:42] -rw-r--r-- 1 boinc boinc         0 Jan 16 09:24 boinc_lockfile
[2026-01-16 10:37:42] -rw-r--r-- 1 boinc boinc      2508 Jan 16 09:24 pandaJob.out
[2026-01-16 10:37:42] -rw------- 1 boinc boinc   1004075 Jan 16 09:24 agis_schedconf.cvmfs.json
[2026-01-16 10:37:42] -rw------- 1 boinc boinc   1516246 Jan 16 09:24 agis_ddmendpoints.agis.ALL.json
[2026-01-16 10:37:42] drwx------ 5 boinc boinc      4096 Jan 16 09:24 pilot3
[2026-01-16 10:37:42] -rw------- 1 boinc boinc 153502025 Jan 16 10:35 HITS.48215263._048137.pool.root.1
[2026-01-16 10:37:42] -rw-r--r-- 1 boinc boinc       530 Jan 16 10:35 boinc_task_state.xml
[2026-01-16 10:37:42] -rw------- 1 boinc boinc      1067 Jan 16 10:35 memory_monitor_summary.json
[2026-01-16 10:37:42] -rw------- 1 boinc boinc    368454 Jan 16 10:35 log.48215263._048137.job.log.tgz.1
[2026-01-16 10:37:42] -rw------- 1 boinc boinc      7841 Jan 16 10:36 heartbeat.json
[2026-01-16 10:37:42] -rw------- 1 boinc boinc        95 Jan 16 10:37 pilot_heartbeat.json
[2026-01-16 10:37:42] -rw-r--r-- 1 boinc boinc        27 Jan 16 10:37 wrapper_checkpoint.txt
[2026-01-16 10:37:42] -rw-r--r-- 1 boinc boinc      8192 Jan 16 10:37 boinc_mmap_file
[2026-01-16 10:37:42] -rw------- 1 boinc boinc      4752 Jan 16 10:37 pilotlog.txt
[2026-01-16 10:37:42] -rw------- 1 boinc boinc    633769 Jan 16 10:37 log.48215263._048137.job.log.1
[2026-01-16 10:37:42] -rw------- 1 boinc boinc       357 Jan 16 10:37 output.list
[2026-01-16 10:37:42] -rw-r--r-- 1 boinc boinc       620 Jan 16 10:37 runtime_log
[2026-01-16 10:37:42] -rw------- 1 boinc boinc   1024000 Jan 16 10:37 result.tar.gz
[2026-01-16 10:37:42] -rw-r--r-- 1 boinc boinc      8888 Jan 16 10:37 runtime_log.err
[2026-01-16 10:37:42] -rw------- 1 boinc boinc       653 Jan 16 10:37 2BOODmFOW08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5LuKDmpOPeGo.diag
[2026-01-16 10:37:42] -rw-r--r-- 1 boinc boinc     22108 Jan 16 10:37 stderr.txt
[2026-01-16 10:37:42] HITS file was successfully produced:
[2026-01-16 10:37:42] -rw------- 1 boinc boinc 153502025 Jan 16 10:35 shared/HITS.pool.root.1
[2026-01-16 10:37:42]  *** Contents of shared directory: ***
[2026-01-16 10:37:42] total 734392
[2026-01-16 10:37:42] -rw-r--r-- 2 boinc boinc     15847 Jan 16 09:24 start_atlas.sh
[2026-01-16 10:37:42] -rw-r--r-- 2 boinc boinc    592402 Jan 16 09:24 input.tar.gz
[2026-01-16 10:37:42] -rw-r--r-- 2 boinc boinc 596866652 Jan 16 09:24 ATLAS.root_0
[2026-01-16 10:37:42] -rw------- 1 boinc boinc 153502025 Jan 16 10:35 HITS.pool.root.1
[2026-01-16 10:37:42] -rw------- 1 boinc boinc   1024000 Jan 16 10:37 result.tar.gz
10:37:44 (39503): run_atlas exited; CPU time 47280.836438
10:37:44 (39503): called boinc_finish(0)

</stderr_txt>
]]>

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