Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:32:43 (3533933): wrapper (7.7.26015): starting
17:32:43 (3533933): wrapper: running run_atlas (--nthreads 2)
[2026-01-16 17:32:43] Arguments: --nthreads 2
[2026-01-16 17:32:43] Threads: 2
[2026-01-16 17:32:43] Checking for CVMFS
[2026-01-16 17:32:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-16 17:32:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-16 17:32:43] Running cvmfs_config stat atlas.cern.ch
[2026-01-16 17:32:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-16 17:32:44] 2.9.2.0 2587015 4062 65796 155214 2 68 18488293 36864000 0 130560 0 2518174 99.988 163336 6876 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-16 17:32:44] CVMFS is ok
[2026-01-16 17:32:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-16 17:32:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-16 17:32:44] Further information can be found at the LHC@home message board.
[2026-01-16 17:32:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-16 17:32:44] Checking for apptainer binary...
[2026-01-16 17:32:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-16 17:32:44] Running /usr/bin/apptainer --version
[2026-01-16 17:32:44] apptainer version 1.4.1-1.1
[2026-01-16 17:32:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-16 17:32:44] thA354
[2026-01-16 17:32:44] apptainer works
[2026-01-16 17:32:44] Set ATHENA_PROC_NUMBER=2
[2026-01-16 17:32:44] Set ATHENA_CORE_NUMBER=2
[2026-01-16 17:32:44] Starting ATLAS job with PandaID=6970393560
[2026-01-16 17:32:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-16 18:58:11]  *** The last 200 lines of the pilot log: ***
[2026-01-16 18:58:11] 2026-01-16 17:56:58,914 | INFO     | transferring file log.48215263._046871.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6970393560/log.48215263._046871.job.log.tgz.1 to /local/data/boinc/
[2026-01-16 18:58:11] 2026-01-16 17:56:58,914 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6970393560/log.48215263._046871.job.log.tgz.1 /local/data/boinc/slots/0/log.48215263._0468
[2026-01-16 18:58:11] 2026-01-16 17:56:58,926 | INFO     | adding to output.list: log.48215263._046871.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4a/d8/log.48215263._046871.job.log.tg
[2026-01-16 18:58:11] 2026-01-16 17:56:58,926 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-16 18:58:11] 2026-01-16 17:56:58,926 | INFO     | summary of transferred files:
[2026-01-16 18:58:11] 2026-01-16 17:56:58,926 | INFO     |  -- lfn=log.48215263._046871.job.log.tgz.1, status_code=0, status=transferred
[2026-01-16 18:58:11] 2026-01-16 17:56:58,926 | INFO     | stage-out finished correctly
[2026-01-16 18:58:11] 2026-01-16 17:56:58,947 | INFO     | time since job start (5040s) is within the limit (349056.0s)
[2026-01-16 18:58:11] 2026-01-16 17:56:58,955 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-16 18:58:11] 2026-01-16 17:56:58,981 | INFO     | job 6970393560 has state=finished
[2026-01-16 18:58:11] 2026-01-16 17:56:58,981 | INFO     | preparing for final server update for job 6970393560 in state='finished'
[2026-01-16 18:58:11] 2026-01-16 17:56:58,982 | INFO     | this job has now completed (state=finished)
[2026-01-16 18:58:11] 2026-01-16 17:56:58,982 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-16 18:58:11] 2026-01-16 17:56:58,982 | INFO     | log transfer has been attempted: DONE
[2026-01-16 18:58:11] 2026-01-16 17:56:58,982 | INFO     | job 6970393560 has finished - writing final server update
[2026-01-16 18:58:11] 2026-01-16 17:56:58,982 | INFO     | total number of processed events: 400 (read)
[2026-01-16 18:58:11] 2026-01-16 17:56:58,982 | INFO     | executing command: lscpu
[2026-01-16 18:58:11] 2026-01-16 17:56:58,992 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-16 18:58:11] 2026-01-16 17:57:00,952 | INFO     | time since job start (5042s) is within the limit (349056.0s)
[2026-01-16 18:58:11] 2026-01-16 17:57:01,596 | WARNING  | process 3544069 can no longer be monitored (due to stat problems) - aborting
[2026-01-16 18:58:11] 2026-01-16 17:57:01,596 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6970393560/memory_monitor_summary.json (trf name=prmon)
[2026-01-16 18:58:11] 2026-01-16 17:57:01,597 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6970393560/memory_monitor_summary.json (trf name=prmon)
[2026-01-16 18:58:11] 2026-01-16 17:57:01,597 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-16 18:58:11] 2026-01-16 17:57:01,597 | WARNING  | maxPSS not found in memory monitor output
[2026-01-16 18:58:11] 2026-01-16 17:57:01,597 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 1906241 B
[2026-01-16 18:58:11] 2026-01-16 17:57:01,597 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15369 B
[2026-01-16 18:58:11] 2026-01-16 17:57:01,597 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-16 18:58:11] 2026-01-16 17:57:02,959 | INFO     | time since job start (5044s) is within the limit (349056.0s)
[2026-01-16 18:58:11] 2026-01-16 17:57:04,964 | INFO     | time since job start (5046s) is within the limit (349056.0s)
[2026-01-16 18:58:11] 2026-01-16 17:57:06,598 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-16 18:58:11] 2026-01-16 17:57:06,601 | INFO     | found 8 cores (8 cores per socket, 1 socket) , CPU MHz: 4515.635249999999
[2026-01-16 18:58:11] 2026-01-16 17:57:06,602 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6970393560/memory_monitor_summary.json (trf name=prmon)
[2026-01-16 18:58:11] 2026-01-16 17:57:06,602 | INFO     | extracted standard info from prmon json
[2026-01-16 18:58:11] 2026-01-16 17:57:06,602 | INFO     | extracted standard memory fields from prmon json
[2026-01-16 18:58:11] 2026-01-16 17:57:06,602 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-16 18:58:11] 2026-01-16 17:57:06,602 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-16 18:58:11] 2026-01-16 17:57:06,602 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-16 18:58:11] 2026-01-16 17:57:06,603 | INFO     | fitting pss+swap vs Time
[2026-01-16 18:58:11] 2026-01-16 17:57:06,603 | INFO     | sum of square deviations: 136095575.0
[2026-01-16 18:58:11] 2026-01-16 17:57:06,603 | INFO     | sum of deviations: -17952434596.5
[2026-01-16 18:58:11] 2026-01-16 17:57:06,603 | INFO     | mean x: 1768583797.5
[2026-01-16 18:58:11] 2026-01-16 17:57:06,603 | INFO     | mean y: 2492783.8289473685
[2026-01-16 18:58:11] 2026-01-16 17:57:06,603 | INFO     | intersect: 233297256063.59283
[2026-01-16 18:58:11] 2026-01-16 17:57:06,604 | INFO     | chi2: 0.13974280490556637
[2026-01-16 18:58:11] 2026-01-16 17:57:06,604 | INFO     | current memory leak: -131.91 B/s (using 76 data points, chi2=0.14)
[2026-01-16 18:58:11] 2026-01-16 17:57:06,604 | INFO     | could have reported an average CPU frequency of 4371 MHz (6 samples)
[2026-01-16 18:58:11] 2026-01-16 17:57:06,604 | INFO     | ..............................
[2026-01-16 18:58:11] 2026-01-16 17:57:06,604 | INFO     | . Timing measurements:
[2026-01-16 18:58:11] 2026-01-16 17:57:06,604 | INFO     | . get job = 0 s
[2026-01-16 18:58:11] 2026-01-16 17:57:06,604 | INFO     | . initial setup = 1 s
[2026-01-16 18:58:11] 2026-01-16 17:57:06,604 | INFO     | . payload setup = 6 s
[2026-01-16 18:58:11] 2026-01-16 17:57:06,604 | INFO     | . stage-in = 0 s
[2026-01-16 18:58:11] 2026-01-16 17:57:06,604 | INFO     | . payload execution = 5012 s
[2026-01-16 18:58:11] 2026-01-16 17:57:06,604 | INFO     | . stage-out = 0 s
[2026-01-16 18:58:11] 2026-01-16 17:57:06,604 | INFO     | . log creation = 0 s
[2026-01-16 18:58:11] 2026-01-16 17:57:06,604 | INFO     | ..............................
[2026-01-16 18:58:11] 2026-01-16 17:57:06,627 | INFO     | sufficient remaining disk space (506163363840 B)
[2026-01-16 18:58:11] 2026-01-16 17:57:06,634 | INFO     | work directory size check will use 4404019200 B as a max limit (20% grace limit added, divider=1)
[2026-01-16 18:58:11] 2026-01-16 17:57:06,634 | INFO     | 
[2026-01-16 18:58:11] 2026-01-16 17:57:06,634 | INFO     | job summary report
[2026-01-16 18:58:11] 2026-01-16 17:57:06,634 | INFO     | --------------------------------------------------
[2026-01-16 18:58:11] 2026-01-16 17:57:06,634 | INFO     | PanDA job id: 6970393560
[2026-01-16 18:58:11] 2026-01-16 17:57:06,634 | INFO     | task id: 48215263
[2026-01-16 18:58:11] 2026-01-16 17:57:06,634 | INFO     | errors: (none)
[2026-01-16 18:58:11] 2026-01-16 17:57:06,634 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-16 18:58:11] 2026-01-16 17:57:06,634 | INFO     | pilot state: finished 
[2026-01-16 18:58:11] 2026-01-16 17:57:06,634 | INFO     | transexitcode: 0
[2026-01-16 18:58:11] 2026-01-16 17:57:06,634 | INFO     | exeerrorcode: 0
[2026-01-16 18:58:11] 2026-01-16 17:57:06,635 | INFO     | exeerrordiag: 
[2026-01-16 18:58:11] 2026-01-16 17:57:06,635 | INFO     | exitcode: 0
[2026-01-16 18:58:11] 2026-01-16 17:57:06,635 | INFO     | exitmsg: OK
[2026-01-16 18:58:11] 2026-01-16 17:57:06,635 | INFO     | cpuconsumptiontime: 9688 s
[2026-01-16 18:58:11] 2026-01-16 17:57:06,635 | INFO     | nevents: 400
[2026-01-16 18:58:11] 2026-01-16 17:57:06,635 | INFO     | neventsw: 0
[2026-01-16 18:58:11] 2026-01-16 17:57:06,635 | INFO     | pid: 3544069
[2026-01-16 18:58:11] 2026-01-16 17:57:06,635 | INFO     | pgrp: 3544069
[2026-01-16 18:58:11] 2026-01-16 17:57:06,635 | INFO     | corecount: 2
[2026-01-16 18:58:11] 2026-01-16 17:57:06,635 | INFO     | event service: False
[2026-01-16 18:58:11] 2026-01-16 17:57:06,635 | INFO     | sizes: {0: 2283954, 1: 2283954, 7: 2284244, 11: 2284272, 5022: 2310655, 5023: 2319843, 5031: 2319981}
[2026-01-16 18:58:11] 2026-01-16 17:57:06,635 | INFO     | --------------------------------------------------
[2026-01-16 18:58:11] 2026-01-16 17:57:06,635 | INFO     | 
[2026-01-16 18:58:11] 2026-01-16 17:57:06,635 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-01-16 18:58:11] 2026-01-16 17:57:06,635 | INFO     | size of work directory /local/data/boinc/slots/0/PanDA_Pilot-6970393560: 2204832 B (within 4404019200 B limit)
[2026-01-16 18:58:11] 2026-01-16 17:57:06,635 | INFO     | pfn file=/local/data/boinc/slots/0/PanDA_Pilot-6970393560/HITS.48215263._046871.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-16 18:58:11] 2026-01-16 17:57:06,635 | INFO     | total size of present files: 0 B (workdir size: 2204832 B)
[2026-01-16 18:58:11] 2026-01-16 17:57:06,637 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-6970393560/HITS.48215263._046871.pool.root.1 since it does not exist
[2026-01-16 18:58:11] 2026-01-16 17:57:06,645 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-16 18:58:11] 2026-01-16 17:57:06,645 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-16 18:58:11] 2026-01-16 17:57:06,645 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-16 18:58:11] 2026-01-16 17:57:06,645 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-16 18:58:11] 2026-01-16 17:57:06,646 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-16 18:58:11] 2026-01-16 17:57:06,646 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-16 18:58:11] 2026-01-16 17:57:06,646 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-16 18:58:11] 2026-01-16 17:57:06,646 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-16 18:58:11] 2026-01-16 17:57:06,646 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-16 18:58:11] 2026-01-16 17:57:06,646 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-16 18:58:11] 2026-01-16 17:57:06,646 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-16 18:58:11] 2026-01-16 17:57:06,646 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-16 18:58:11] 2026-01-16 17:57:06,646 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-16 18:58:11] 2026-01-16 17:57:06,646 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-16 18:58:11] 2026-01-16 17:57:06,646 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-16 18:58:11] 2026-01-16 17:57:06,646 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-16 18:58:11] 2026-01-16 17:57:06,646 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-16 18:58:11] 2026-01-16 17:57:06,646 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-16 18:58:11] 2026-01-16 17:57:06,646 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-16 18:58:11] 2026-01-16 17:57:06,646 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-16 18:58:11] 2026-01-16 17:57:06,646 | INFO     | job 6970393560 has completed (purged errors)
[2026-01-16 18:58:11] 2026-01-16 17:57:06,646 | INFO     | overall cleanup function is called
[2026-01-16 18:58:11] 2026-01-16 17:57:06,674 | INFO     | number of running child processes to parent process 3544069: 1
[2026-01-16 18:58:11] 2026-01-16 17:57:06,674 | INFO     | maximum number of monitored processes: 6
[2026-01-16 18:58:11] 2026-01-16 17:57:06,674 | INFO     | aborting job monitoring since job object (job id=6970393560) has expired
[2026-01-16 18:58:11] 2026-01-16 17:57:07,652 | INFO     | --- collectZombieJob: --- 10, [3544069]
[2026-01-16 18:58:11] 2026-01-16 17:57:07,653 | INFO     | zombie collector waiting for pid 3544069
[2026-01-16 18:58:11] 2026-01-16 17:57:07,653 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-16 18:58:11] 2026-01-16 17:57:07,653 | INFO     | collected zombie processes
[2026-01-16 18:58:11] 2026-01-16 17:57:07,653 | INFO     | will attempt to kill all subprocesses of pid=3544069
[2026-01-16 18:58:11] 2026-01-16 17:57:07,689 | INFO     | process IDs to be killed: [3544069] (in reverse order)
[2026-01-16 18:58:11] 2026-01-16 17:57:07,710 | WARNING  | found no corresponding commands to process id(s)
[2026-01-16 18:58:11] 2026-01-16 17:57:07,710 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-16 18:58:11] 2026-01-16 17:57:07,711 | INFO     | did not find any defunct processes belonging to 3544069
[2026-01-16 18:58:11] 2026-01-16 17:57:07,712 | INFO     | did not find any defunct processes belonging to 3544069
[2026-01-16 18:58:11] 2026-01-16 17:57:07,712 | INFO     | ready for new job
[2026-01-16 18:58:11] 2026-01-16 17:57:07,712 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-16 18:58:11] 2026-01-16 17:57:07,713 | INFO     | ***************************************
[2026-01-16 18:58:11] 2026-01-16 17:57:07,713 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-16 18:58:11] 2026-01-16 17:57:07,713 | INFO     | ***************************************
[2026-01-16 18:58:11] 2026-01-16 17:57:07,713 | INFO     | 
[2026-01-16 18:58:11] 2026-01-16 17:57:07,713 | INFO     | architecture information:
[2026-01-16 18:58:11] 2026-01-16 17:57:07,713 | INFO     | executing command: cat /etc/os-release
[2026-01-16 18:58:11] 2026-01-16 17:57:07,722 | INFO     | cat /etc/os-release:
[2026-01-16 18:58:11] NAME="CentOS Linux"
[2026-01-16 18:58:11] VERSION="7 (Core)"
[2026-01-16 18:58:11] ID="centos"
[2026-01-16 18:58:11] ID_LIKE="rhel fedora"
[2026-01-16 18:58:11] VERSION_ID="7"
[2026-01-16 18:58:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-16 18:58:11] ANSI_COLOR="0;31"
[2026-01-16 18:58:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-16 18:58:11] HOME_URL="https://www.centos.org/"
[2026-01-16 18:58:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-16 18:58:11] 
[2026-01-16 18:58:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-16 18:58:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-16 18:58:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-16 18:58:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-16 18:58:11] 
[2026-01-16 18:58:11] 2026-01-16 17:57:07,722 | INFO     | ***************************************
[2026-01-16 18:58:11] 2026-01-16 17:57:08,224 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-16 18:58:11] 2026-01-16 17:57:08,235 | INFO     | sufficient remaining disk space (506165460992 B)
[2026-01-16 18:58:11] 2026-01-16 17:57:08,235 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-16 18:58:11] 2026-01-16 17:57:08,235 | INFO     | current server update state: UPDATING_FINAL
[2026-01-16 18:58:11] 2026-01-16 17:57:08,235 | INFO     | update_server=False
[2026-01-16 18:58:11] 2026-01-16 17:57:08,236 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-16 18:58:11] 2026-01-16 17:57:08,236 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-16 18:58:11] 2026-01-16 17:57:08,236 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-16 18:58:11] 2026-01-16 17:57:08,236 | INFO     | aborting loop
[2026-01-16 18:58:11] 2026-01-16 17:57:08,439 | INFO     | all data control threads have been joined
[2026-01-16 18:58:11] 2026-01-16 17:57:08,904 | INFO     | all payload control threads have been joined
[2026-01-16 18:58:11] 2026-01-16 17:57:09,241 | INFO     | [job] retrieve thread has finished
[2026-01-16 18:58:11] 2026-01-16 17:57:09,242 | INFO     | [job] queue monitor thread has finished
[2026-01-16 18:58:11] 2026-01-16 17:57:09,243 | INFO     | [job] job monitor thread has finished
[2026-01-16 18:58:11] 2026-01-16 17:57:09,365 | INFO     | [data] copytool_in thread has finished
[2026-01-16 18:58:11] 2026-01-16 17:57:09,373 | INFO     | [payload] execute_payloads thread has finished
[2026-01-16 18:58:11] 2026-01-16 17:57:09,442 | INFO     | [data] control thread has finished
[2026-01-16 18:58:11] 2026-01-16 17:57:09,466 | INFO     | all job control threads have been joined
[2026-01-16 18:58:11] 2026-01-16 17:57:09,469 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-16 18:58:11] 2026-01-16 17:57:09,491 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-16 18:58:11] 2026-01-16 17:57:09,700 | INFO     | [job] validate thread has finished
[2026-01-16 18:58:11] 2026-01-16 17:57:09,764 | INFO     | [job] create_data_payload thread has finished
[2026-01-16 18:58:11] 2026-01-16 17:57:09,910 | INFO     | [payload] control thread has finished
[2026-01-16 18:58:11] 2026-01-16 17:57:09,929 | INFO     | [payload] validate_pre thread has finished
[2026-01-16 18:58:11] 2026-01-16 17:57:10,104 | INFO     | [payload] validate_post thread has finished
[2026-01-16 18:58:11] 2026-01-16 17:57:10,472 | INFO     | [job] control thread has finished
[2026-01-16 18:58:11] 2026-01-16 17:57:10,843 | INFO     | [payload] failed_post thread has finished
[2026-01-16 18:58:11] 2026-01-16 17:57:11,474 | INFO     | [data] copytool_out thread has finished
[2026-01-16 18:58:11] 2026-01-16 17:57:13,497 | INFO     | [data] queue_monitor thread has finished
[2026-01-16 18:58:11] 2026-01-16 17:57:18,500 | INFO     | job.realtimelogging is not enabled
[2026-01-16 18:58:11] 2026-01-16 17:57:19,506 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-16 18:58:11] 2026-01-16 17:57:38,098 | INFO     | PID=3537644 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-16 18:58:11] 2026-01-16 17:57:38,098 | INFO     | found 0 job(s) in 20 queues
[2026-01-16 18:58:11] 2026-01-16 17:57:38,098 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-16 18:58:11] 2026-01-16 17:57:38,098 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-16 18:58:11] 2026-01-16 17:58:05,458 | INFO     | [monitor] cgroup control has ended
[2026-01-16 18:58:11] 2026-01-16 17:58:06,463 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140566831236928)>', '<ExcThread(monitor, started 140566327179008)>']
[2026-01-16 18:58:11] 2026-01-16 17:58:07,237 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-16 18:58:11] 2026-01-16 17:58:07,237 | INFO     | [monitor] control thread has ended
[2026-01-16 18:58:11] 2026-01-16 17:58:11,481 | INFO     | all workflow threads have been joined
[2026-01-16 18:58:11] 2026-01-16 17:58:11,482 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-16 18:58:11] 2026-01-16 17:58:11,483 | INFO     | traces error code: 0
[2026-01-16 18:58:11] 2026-01-16 17:58:11,483 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-16 18:58:11] 2026-01-16 17:58:11,528 [wrapper] ==== pilot stdout END ====
[2026-01-16 18:58:11] 2026-01-16 17:58:11,530 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-16 18:58:11] 2026-01-16 17:58:11,533 [wrapper] pilotpid: 3537644
[2026-01-16 18:58:11] 2026-01-16 17:58:11,535 [wrapper] Pilot exit status: 0
[2026-01-16 18:58:11] 2026-01-16 17:58:11,541 [wrapper] pandaids: 6970393560
[2026-01-16 18:58:11] 2026-01-16 17:58:11,555 [wrapper] cleanup supervisor_pilot 3555849 3537645
[2026-01-16 18:58:11] 2026-01-16 17:58:11,557 [wrapper] Test setup, not cleaning
[2026-01-16 18:58:11] 2026-01-16 17:58:11,560 [wrapper] apfmon messages muted
[2026-01-16 18:58:11] 2026-01-16 17:58:11,562 [wrapper] ==== wrapper stdout END ====
[2026-01-16 18:58:11] 2026-01-16 17:58:11,564 [wrapper] ==== wrapper stderr END ====
[2026-01-16 18:58:11]  *** Error codes and diagnostics ***
[2026-01-16 18:58:11]     "exeErrorCode": 0,
[2026-01-16 18:58:11]     "exeErrorDiag": "",
[2026-01-16 18:58:11]     "pilotErrorCode": 0,
[2026-01-16 18:58:11]     "pilotErrorDiag": "",
[2026-01-16 18:58:11]  *** Listing of results directory ***
[2026-01-16 18:58:11] total 733428
[2026-01-16 18:58:11] -rw-r--r-- 1 boinc boinc    579449 Jan 15 05:50 pilot3.tar.gz
[2026-01-16 18:58:11] -rwx------ 1 boinc boinc     36322 Jan 15 05:54 runpilot2-wrapper.sh
[2026-01-16 18:58:11] -rw-r--r-- 1 boinc boinc      5112 Jan 15 06:00 queuedata.json
[2026-01-16 18:58:11] -rw-r--r-- 1 boinc boinc       100 Jan 16 17:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-16 18:58:11] -rwxr-xr-x 1 boinc boinc      7986 Jan 16 17:32 run_atlas
[2026-01-16 18:58:11] -rw-r--r-- 1 boinc boinc       105 Jan 16 17:32 job.xml
[2026-01-16 18:58:11] -rw-r--r-- 2 boinc boinc 596871295 Jan 16 17:32 EVNT.32794306._001818.pool.root.1
[2026-01-16 18:58:11] -rw-r--r-- 2 boinc boinc    592402 Jan 16 17:32 input.tar.gz
[2026-01-16 18:58:11] -rw-r--r-- 2 boinc boinc     15847 Jan 16 17:32 start_atlas.sh
[2026-01-16 18:58:11] drwxrwx--x 2 boinc boinc      4096 Jan 16 17:32 shared
[2026-01-16 18:58:11] -rw-r--r-- 1 boinc boinc         0 Jan 16 17:32 boinc_setup_complete
[2026-01-16 18:58:11] -rw-r--r-- 1 boinc boinc      6205 Jan 16 17:32 init_data.xml
[2026-01-16 18:58:11] -rw-r--r-- 1 boinc boinc         0 Jan 16 17:32 boinc_lockfile
[2026-01-16 18:58:11] -rw-r--r-- 1 boinc boinc      2508 Jan 16 17:32 pandaJob.out
[2026-01-16 18:58:11] -rw------- 1 boinc boinc   1004091 Jan 16 17:32 agis_schedconf.cvmfs.json
[2026-01-16 18:58:11] -rw------- 1 boinc boinc   1516246 Jan 16 17:32 agis_ddmendpoints.agis.ALL.json
[2026-01-16 18:58:11] drwx------ 5 boinc boinc      4096 Jan 16 17:32 pilot3
[2026-01-16 18:58:11] -rw------- 1 boinc boinc 148271425 Jan 16 18:56 HITS.48215263._046871.pool.root.1
[2026-01-16 18:58:11] -rw-r--r-- 1 boinc boinc       529 Jan 16 18:56 boinc_task_state.xml
[2026-01-16 18:58:11] -rw------- 1 boinc boinc      1032 Jan 16 18:56 memory_monitor_summary.json
[2026-01-16 18:58:11] -rw------- 1 boinc boinc    237737 Jan 16 18:56 log.48215263._046871.job.log.tgz.1
[2026-01-16 18:58:11] -rw------- 1 boinc boinc      7748 Jan 16 18:57 heartbeat.json
[2026-01-16 18:58:11] -rw------- 1 boinc boinc        95 Jan 16 18:57 pilot_heartbeat.json
[2026-01-16 18:58:11] -rw-r--r-- 1 boinc boinc      8192 Jan 16 18:57 boinc_mmap_file
[2026-01-16 18:58:11] -rw-r--r-- 1 boinc boinc        26 Jan 16 18:57 wrapper_checkpoint.txt
[2026-01-16 18:58:11] -rw------- 1 boinc boinc      4824 Jan 16 18:58 pilotlog.txt
[2026-01-16 18:58:11] -rw------- 1 boinc boinc    740749 Jan 16 18:58 log.48215263._046871.job.log.1
[2026-01-16 18:58:11] -rw------- 1 boinc boinc       357 Jan 16 18:58 output.list
[2026-01-16 18:58:11] -rw-r--r-- 1 boinc boinc       620 Jan 16 18:58 runtime_log
[2026-01-16 18:58:11] -rw------- 1 boinc boinc    993280 Jan 16 18:58 result.tar.gz
[2026-01-16 18:58:11] -rw------- 1 boinc boinc       656 Jan 16 18:58 w84MDmcYU08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTJuKDmRxzQKo.diag
[2026-01-16 18:58:11] -rw-r--r-- 1 boinc boinc      8897 Jan 16 18:58 runtime_log.err
[2026-01-16 18:58:11] -rw-r--r-- 1 boinc boinc     22795 Jan 16 18:58 stderr.txt
[2026-01-16 18:58:11] HITS file was successfully produced:
[2026-01-16 18:58:11] -rw------- 1 boinc boinc 148271425 Jan 16 18:56 shared/HITS.pool.root.1
[2026-01-16 18:58:11]  *** Contents of shared directory: ***
[2026-01-16 18:58:11] total 729260
[2026-01-16 18:58:11] -rw-r--r-- 2 boinc boinc 596871295 Jan 16 17:32 ATLAS.root_0
[2026-01-16 18:58:11] -rw-r--r-- 2 boinc boinc    592402 Jan 16 17:32 input.tar.gz
[2026-01-16 18:58:11] -rw-r--r-- 2 boinc boinc     15847 Jan 16 17:32 start_atlas.sh
[2026-01-16 18:58:11] -rw------- 1 boinc boinc 148271425 Jan 16 18:56 HITS.pool.root.1
[2026-01-16 18:58:11] -rw------- 1 boinc boinc    993280 Jan 16 18:58 result.tar.gz
18:58:13 (3533933): run_atlas exited; CPU time 9710.979131
18:58:13 (3533933): called boinc_finish(0)

</stderr_txt>
]]>

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