Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:09:07 (831762): wrapper (7.7.26015): starting
11:09:07 (831762): wrapper: running run_atlas (--nthreads 10)
[2026-01-15 11:09:07] Arguments: --nthreads 10
[2026-01-15 11:09:07] Threads: 10
[2026-01-15 11:09:07] Checking for CVMFS
[2026-01-15 11:09:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 11:09:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 11:09:07] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 11:09:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 11:09:08] 2.13.3.0 7385 102207 191160 155177 1 524 22816373 32503808 28790 16776704 0 1197783718 99.605 1254659062 49203 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-15 11:09:08] CVMFS is ok
[2026-01-15 11:09:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 11:09:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 11:09:08] Further information can be found at the LHC@home message board.
[2026-01-15 11:09:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 11:09:08] Checking for apptainer binary...
[2026-01-15 11:09:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 11:09:08] Running /usr/bin/apptainer --version
[2026-01-15 11:09:08] apptainer version 1.4.5-2.el9
[2026-01-15 11:09:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 11:09:09] c8-7-1.aglt2.org
[2026-01-15 11:09:09] apptainer works
[2026-01-15 11:09:09] Set ATHENA_PROC_NUMBER=10
[2026-01-15 11:09:09] Set ATHENA_CORE_NUMBER=10
[2026-01-15 11:09:09] Starting ATLAS job with PandaID=6970396024
[2026-01-15 11:09:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 11:48:20]  *** The last 200 lines of the pilot log: ***
[2026-01-15 11:48:21] 2026-01-15 16:47:29,946 | INFO     | summary of transferred files:
[2026-01-15 11:48:21] 2026-01-15 16:47:29,946 | INFO     |  -- lfn=log.48215263._047995.job.log.tgz.1, status_code=0, status=transferred
[2026-01-15 11:48:21] 2026-01-15 16:47:29,946 | INFO     | stage-out finished correctly
[2026-01-15 11:48:21] 2026-01-15 16:47:31,652 | INFO     | time since job start (2261s) is within the limit (349056.0s)
[2026-01-15 11:48:21] 2026-01-15 16:47:31,749 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-15 11:48:21] 2026-01-15 16:47:32,389 | INFO     | job 6970396024 has state=finished
[2026-01-15 11:48:21] 2026-01-15 16:47:32,389 | INFO     | preparing for final server update for job 6970396024 in state='finished'
[2026-01-15 11:48:21] 2026-01-15 16:47:32,390 | INFO     | this job has now completed (state=finished)
[2026-01-15 11:48:21] 2026-01-15 16:47:32,390 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-15 11:48:21] 2026-01-15 16:47:32,390 | INFO     | log transfer has been attempted: DONE
[2026-01-15 11:48:21] 2026-01-15 16:47:32,390 | INFO     | job 6970396024 has finished - writing final server update
[2026-01-15 11:48:21] 2026-01-15 16:47:32,390 | INFO     | total number of processed events: 400 (read)
[2026-01-15 11:48:21] 2026-01-15 16:47:32,412 | INFO     | executing command: lscpu
[2026-01-15 11:48:21] 2026-01-15 16:47:32,488 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-15 11:48:21] 2026-01-15 16:47:33,660 | INFO     | time since job start (2263s) is within the limit (349056.0s)
[2026-01-15 11:48:21] 2026-01-15 16:47:34,018 | WARNING  | process 861071 can no longer be monitored (due to stat problems) - aborting
[2026-01-15 11:48:21] 2026-01-15 16:47:34,018 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6970396024/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 11:48:21] 2026-01-15 16:47:34,898 | INFO     | number of running child processes to parent process 861071: 1
[2026-01-15 11:48:21] 2026-01-15 16:47:34,898 | INFO     | maximum number of monitored processes: 6
[2026-01-15 11:48:21] 2026-01-15 16:47:35,670 | INFO     | time since job start (2265s) is within the limit (349056.0s)
[2026-01-15 11:48:21] 2026-01-15 16:47:37,404 | INFO     | monitor loop #161: job 0:6970396024 is in state 'finished'
[2026-01-15 11:48:21] 2026-01-15 16:47:37,406 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 11:48:21] 2026-01-15 16:47:37,677 | INFO     | time since job start (2267s) is within the limit (349056.0s)
[2026-01-15 11:48:21] 2026-01-15 16:47:39,689 | INFO     | PID=837784 has CPU usage=13.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 11:48:21] 2026-01-15 16:47:39,689 | INFO     | .. there are 28 such processes running
[2026-01-15 11:48:21] 2026-01-15 16:47:39,910 | INFO     | monitor loop #162: job 0:6970396024 is in state 'finished'
[2026-01-15 11:48:21] 2026-01-15 16:47:39,910 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 11:48:21] 2026-01-15 16:47:40,690 | INFO     | time since job start (2270s) is within the limit (349056.0s)
[2026-01-15 11:48:21] 2026-01-15 16:47:42,421 | INFO     | monitor loop #163: job 0:6970396024 is in state 'finished'
[2026-01-15 11:48:21] 2026-01-15 16:47:42,423 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 11:48:21] 2026-01-15 16:47:42,696 | INFO     | time since job start (2272s) is within the limit (349056.0s)
[2026-01-15 11:48:21] 2026-01-15 16:47:44,703 | INFO     | time since job start (2274s) is within the limit (349056.0s)
[2026-01-15 11:48:21] 2026-01-15 16:47:44,927 | INFO     | monitor loop #164: job 0:6970396024 is in state 'finished'
[2026-01-15 11:48:21] 2026-01-15 16:47:44,928 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 11:48:21] 2026-01-15 16:47:46,575 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-15 11:48:21] 2026-01-15 16:47:46,582 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3642.886296875001
[2026-01-15 11:48:21] 2026-01-15 16:47:46,601 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6970396024/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 11:48:21] 2026-01-15 16:47:46,601 | INFO     | extracted standard info from prmon json
[2026-01-15 11:48:21] 2026-01-15 16:47:46,601 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 11:48:21] 2026-01-15 16:47:46,601 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 11:48:21] 2026-01-15 16:47:46,601 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 11:48:21] 2026-01-15 16:47:46,602 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 11:48:21] 2026-01-15 16:47:46,602 | INFO     | fitting pss+swap vs Time
[2026-01-15 11:48:21] 2026-01-15 16:47:46,602 | INFO     | sum of square deviations: 7553630.0
[2026-01-15 11:48:21] 2026-01-15 16:47:46,602 | INFO     | sum of deviations: 118792009.99999999
[2026-01-15 11:48:21] 2026-01-15 16:47:46,603 | INFO     | mean x: 1768494620.0
[2026-01-15 11:48:21] 2026-01-15 16:47:46,603 | INFO     | mean y: 2637294.5862068967
[2026-01-15 11:48:21] 2026-01-15 16:47:46,603 | INFO     | intersect: -27809557714.16934
[2026-01-15 11:48:21] 2026-01-15 16:47:46,603 | INFO     | chi2: 0.000728857704112525
[2026-01-15 11:48:21] 2026-01-15 16:47:46,603 | INFO     | current memory leak: 15.73 B/s (using 29 data points, chi2=0.00)
[2026-01-15 11:48:21] 2026-01-15 16:47:46,603 | INFO     | could have reported an average CPU frequency of 3651 MHz (5 samples)
[2026-01-15 11:48:21] 2026-01-15 16:47:46,603 | INFO     | ..............................
[2026-01-15 11:48:21] 2026-01-15 16:47:46,603 | INFO     | . Timing measurements:
[2026-01-15 11:48:21] 2026-01-15 16:47:46,603 | INFO     | . get job = 0 s
[2026-01-15 11:48:21] 2026-01-15 16:47:46,603 | INFO     | . initial setup = 2 s
[2026-01-15 11:48:21] 2026-01-15 16:47:46,603 | INFO     | . payload setup = 18 s
[2026-01-15 11:48:21] 2026-01-15 16:47:46,603 | INFO     | . stage-in = 0 s
[2026-01-15 11:48:21] 2026-01-15 16:47:46,603 | INFO     | . payload execution = 2199 s
[2026-01-15 11:48:21] 2026-01-15 16:47:46,603 | INFO     | . stage-out = 1 s
[2026-01-15 11:48:21] 2026-01-15 16:47:46,603 | INFO     | . log creation = 0 s
[2026-01-15 11:48:21] 2026-01-15 16:47:46,603 | INFO     | ..............................
[2026-01-15 11:48:21] 2026-01-15 16:47:46,709 | INFO     | time since job start (2276s) is within the limit (349056.0s)
[2026-01-15 11:48:21] 2026-01-15 16:47:47,165 | INFO     | 
[2026-01-15 11:48:21] 2026-01-15 16:47:47,165 | INFO     | job summary report
[2026-01-15 11:48:21] 2026-01-15 16:47:47,165 | INFO     | --------------------------------------------------
[2026-01-15 11:48:21] 2026-01-15 16:47:47,165 | INFO     | PanDA job id: 6970396024
[2026-01-15 11:48:21] 2026-01-15 16:47:47,165 | INFO     | task id: 48215263
[2026-01-15 11:48:21] 2026-01-15 16:47:47,165 | INFO     | errors: (none)
[2026-01-15 11:48:21] 2026-01-15 16:47:47,165 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-15 11:48:21] 2026-01-15 16:47:47,165 | INFO     | pilot state: finished 
[2026-01-15 11:48:21] 2026-01-15 16:47:47,165 | INFO     | transexitcode: 0
[2026-01-15 11:48:21] 2026-01-15 16:47:47,165 | INFO     | exeerrorcode: 0
[2026-01-15 11:48:21] 2026-01-15 16:47:47,165 | INFO     | exeerrordiag: 
[2026-01-15 11:48:21] 2026-01-15 16:47:47,166 | INFO     | exitcode: 0
[2026-01-15 11:48:21] 2026-01-15 16:47:47,166 | INFO     | exitmsg: OK
[2026-01-15 11:48:21] 2026-01-15 16:47:47,166 | INFO     | cpuconsumptiontime: 15430 s
[2026-01-15 11:48:21] 2026-01-15 16:47:47,166 | INFO     | nevents: 400
[2026-01-15 11:48:21] 2026-01-15 16:47:47,166 | INFO     | neventsw: 0
[2026-01-15 11:48:21] 2026-01-15 16:47:47,166 | INFO     | pid: 861071
[2026-01-15 11:48:21] 2026-01-15 16:47:47,166 | INFO     | pgrp: 861071
[2026-01-15 11:48:21] 2026-01-15 16:47:47,166 | INFO     | corecount: 10
[2026-01-15 11:48:21] 2026-01-15 16:47:47,166 | INFO     | event service: False
[2026-01-15 11:48:21] 2026-01-15 16:47:47,166 | INFO     | sizes: {0: 2283952, 11: 2283952, 19: 2284242, 21: 2284270, 2221: 2309333, 2222: 2318331, 2224: 2318515, 2239: 2318741}
[2026-01-15 11:48:21] 2026-01-15 16:47:47,166 | INFO     | --------------------------------------------------
[2026-01-15 11:48:21] 2026-01-15 16:47:47,166 | INFO     | 
[2026-01-15 11:48:21] 2026-01-15 16:47:47,166 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-15 11:48:21] 2026-01-15 16:47:47,193 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 11:48:21] 2026-01-15 16:47:47,194 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 11:48:21] 2026-01-15 16:47:47,194 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 11:48:21] 2026-01-15 16:47:47,194 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 11:48:21] 2026-01-15 16:47:47,194 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 11:48:21] 2026-01-15 16:47:47,194 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 11:48:21] 2026-01-15 16:47:47,194 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 11:48:21] 2026-01-15 16:47:47,194 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 11:48:21] 2026-01-15 16:47:47,194 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 11:48:21] 2026-01-15 16:47:47,194 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 11:48:21] 2026-01-15 16:47:47,194 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 11:48:21] 2026-01-15 16:47:47,194 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 11:48:21] 2026-01-15 16:47:47,194 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 11:48:21] 2026-01-15 16:47:47,194 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 11:48:21] 2026-01-15 16:47:47,194 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 11:48:21] 2026-01-15 16:47:47,194 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 11:48:21] 2026-01-15 16:47:47,194 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 11:48:21] 2026-01-15 16:47:47,194 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 11:48:21] 2026-01-15 16:47:47,194 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 11:48:21] 2026-01-15 16:47:47,194 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 11:48:21] 2026-01-15 16:47:47,194 | INFO     | job 6970396024 has completed (purged errors)
[2026-01-15 11:48:21] 2026-01-15 16:47:47,195 | INFO     | overall cleanup function is called
[2026-01-15 11:48:21] 2026-01-15 16:47:48,204 | INFO     | --- collectZombieJob: --- 10, [861071]
[2026-01-15 11:48:21] 2026-01-15 16:47:48,204 | INFO     | zombie collector waiting for pid 861071
[2026-01-15 11:48:21] 2026-01-15 16:47:48,204 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 11:48:21] 2026-01-15 16:47:48,204 | INFO     | collected zombie processes
[2026-01-15 11:48:21] 2026-01-15 16:47:48,204 | INFO     | will attempt to kill all subprocesses of pid=861071
[2026-01-15 11:48:21] 2026-01-15 16:47:48,779 | INFO     | process IDs to be killed: [861071] (in reverse order)
[2026-01-15 11:48:21] 2026-01-15 16:47:49,100 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 11:48:21] 2026-01-15 16:47:49,100 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 11:48:21] 2026-01-15 16:47:49,123 | INFO     | did not find any defunct processes belonging to 861071
[2026-01-15 11:48:21] 2026-01-15 16:47:49,145 | INFO     | did not find any defunct processes belonging to 861071
[2026-01-15 11:48:21] 2026-01-15 16:47:49,146 | INFO     | ready for new job
[2026-01-15 11:48:21] 2026-01-15 16:47:49,146 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 11:48:21] 2026-01-15 16:47:49,147 | INFO     | ***************************************
[2026-01-15 11:48:21] 2026-01-15 16:47:49,147 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 11:48:21] 2026-01-15 16:47:49,147 | INFO     | ***************************************
[2026-01-15 11:48:21] 2026-01-15 16:47:49,147 | INFO     | 
[2026-01-15 11:48:21] 2026-01-15 16:47:49,151 | INFO     | architecture information:
[2026-01-15 11:48:21] 2026-01-15 16:47:49,157 | INFO     | executing command: cat /etc/os-release
[2026-01-15 11:48:21] 2026-01-15 16:47:49,174 | INFO     | cat /etc/os-release:
[2026-01-15 11:48:21] NAME="CentOS Linux"
[2026-01-15 11:48:21] VERSION="7 (Core)"
[2026-01-15 11:48:21] ID="centos"
[2026-01-15 11:48:21] ID_LIKE="rhel fedora"
[2026-01-15 11:48:21] VERSION_ID="7"
[2026-01-15 11:48:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 11:48:21] ANSI_COLOR="0;31"
[2026-01-15 11:48:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 11:48:21] HOME_URL="https://www.centos.org/"
[2026-01-15 11:48:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 11:48:21] 
[2026-01-15 11:48:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 11:48:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 11:48:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 11:48:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 11:48:21] 
[2026-01-15 11:48:21] 2026-01-15 16:47:49,174 | INFO     | ***************************************
[2026-01-15 11:48:21] 2026-01-15 16:47:49,677 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-15 11:48:21] 2026-01-15 16:47:49,698 | INFO     | sufficient remaining disk space (89957335040 B)
[2026-01-15 11:48:21] 2026-01-15 16:47:49,698 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 11:48:21] 2026-01-15 16:47:49,698 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 11:48:21] 2026-01-15 16:47:49,698 | INFO     | update_server=False
[2026-01-15 11:48:21] 2026-01-15 16:47:49,698 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 11:48:21] 2026-01-15 16:47:49,783 | INFO     | all data control threads have been joined
[2026-01-15 11:48:21] 2026-01-15 16:47:49,971 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-15 11:48:21] 2026-01-15 16:47:49,971 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-15 11:48:21] 2026-01-15 16:47:49,971 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 11:48:21] 2026-01-15 16:47:49,971 | INFO     | will abort loop
[2026-01-15 11:48:21] 2026-01-15 16:47:50,206 | INFO     | all payload control threads have been joined
[2026-01-15 11:48:21] 2026-01-15 16:47:50,592 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 11:48:21] 2026-01-15 16:47:50,704 | INFO     | [job] retrieve thread has finished
[2026-01-15 11:48:21] 2026-01-15 16:47:50,763 | INFO     | [payload] validate_post thread has finished
[2026-01-15 11:48:21] 2026-01-15 16:47:50,789 | INFO     | [data] control thread has finished
[2026-01-15 11:48:21] 2026-01-15 16:47:50,939 | INFO     | [payload] failed_post thread has finished
[2026-01-15 11:48:21] 2026-01-15 16:47:50,943 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 11:48:21] 2026-01-15 16:47:50,981 | INFO     | [job] job monitor thread has finished
[2026-01-15 11:48:21] 2026-01-15 16:47:51,009 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 11:48:21] 2026-01-15 16:47:51,053 | INFO     | all job control threads have been joined
[2026-01-15 11:48:21] 2026-01-15 16:47:51,211 | INFO     | [payload] control thread has finished
[2026-01-15 11:48:21] 2026-01-15 16:47:51,240 | INFO     | [data] copytool_in thread has finished
[2026-01-15 11:48:21] 2026-01-15 16:47:51,396 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 11:48:21] 2026-01-15 16:47:51,611 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 11:48:21] 2026-01-15 16:47:51,704 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 11:48:21] 2026-01-15 16:47:52,059 | INFO     | [job] control thread has finished
[2026-01-15 11:48:21] 2026-01-15 16:47:52,089 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 11:48:21] 2026-01-15 16:47:52,164 | INFO     | [job] validate thread has finished
[2026-01-15 11:48:21] 2026-01-15 16:47:52,599 | INFO     | [data] copytool_out thread has finished
[2026-01-15 11:48:21] 2026-01-15 16:47:52,713 | INFO     | [job] queue monitor thread has finished
[2026-01-15 11:48:21] 2026-01-15 16:47:55,405 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 11:48:21] 2026-01-15 16:47:56,196 | INFO     | [monitor] cgroup control has ended
[2026-01-15 11:48:21] 2026-01-15 16:47:58,175 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139795288090432)>', '<ExcThread(monitor, started 139794063550208)>']
[2026-01-15 11:48:21] 2026-01-15 16:48:03,201 | INFO     | all workflow threads have been joined
[2026-01-15 11:48:21] 2026-01-15 16:48:03,201 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 11:48:21] 2026-01-15 16:48:03,201 | INFO     | traces error code: 0
[2026-01-15 11:48:21] 2026-01-15 16:48:03,201 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 11:48:21] 2026-01-15 16:48:20,379 | INFO     | PID=837784 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-15 11:48:21] 2026-01-15 16:48:20,379 | INFO     | .. there are 27 such processes running
[2026-01-15 11:48:21] 2026-01-15 16:48:20,380 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 11:48:21] 2026-01-15 16:48:20,380 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 11:48:21] 2026-01-15 16:48:20,380 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 11:48:21] 2026-01-15 16:48:20,380 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 11:48:21] 2026-01-15 16:48:20,380 | CRITICAL | thread 'MainThread' is not alive
[2026-01-15 11:48:21] 2026-01-15 16:48:20,380 | INFO     | [monitor] control thread has ended
[2026-01-15 11:48:21] 2026-01-15 16:48:20,517 [wrapper] ==== pilot stdout END ====
[2026-01-15 11:48:21] 2026-01-15 16:48:20,532 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 11:48:21] 2026-01-15 16:48:20,542 [wrapper] pilotpid: 837784
[2026-01-15 11:48:21] 2026-01-15 16:48:20,545 [wrapper] Pilot exit status: 0
[2026-01-15 11:48:21] 2026-01-15 16:48:20,559 [wrapper] pandaids: 6970396024
[2026-01-15 11:48:21] 2026-01-15 16:48:20,696 [wrapper] cleanup supervisor_pilot 1073080 837785
[2026-01-15 11:48:21] 2026-01-15 16:48:20,699 [wrapper] Test setup, not cleaning
[2026-01-15 11:48:21] 2026-01-15 16:48:20,702 [wrapper] apfmon messages muted
[2026-01-15 11:48:21] 2026-01-15 16:48:20,705 [wrapper] ==== wrapper stdout END ====
[2026-01-15 11:48:21] 2026-01-15 16:48:20,708 [wrapper] ==== wrapper stderr END ====
[2026-01-15 11:48:21]  *** Error codes and diagnostics ***
[2026-01-15 11:48:21]     "exeErrorCode": 0,
[2026-01-15 11:48:21]     "exeErrorDiag": "",
[2026-01-15 11:48:21]     "pilotErrorCode": 0,
[2026-01-15 11:48:21]     "pilotErrorDiag": "",
[2026-01-15 11:48:21]  *** Listing of results directory ***
[2026-01-15 11:48:21] total 727516
[2026-01-15 11:48:21] -rw-r--r--. 1 boincer umatlas    579449 Jan 15 01:52 pilot3.tar.gz
[2026-01-15 11:48:21] -rwx------. 1 boincer umatlas     36322 Jan 15 01:55 runpilot2-wrapper.sh
[2026-01-15 11:48:21] -rw-r--r--. 1 boincer umatlas      5112 Jan 15 02:00 queuedata.json
[2026-01-15 11:48:21] -rw-r--r--. 1 boincer umatlas       100 Jan 15 11:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 11:48:21] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 15 11:09 run_atlas
[2026-01-15 11:48:21] -rw-r--r--. 1 boincer umatlas       105 Jan 15 11:09 job.xml
[2026-01-15 11:48:21] -rw-r--r--. 2 boincer umatlas 592866516 Jan 15 11:09 EVNT.32794306._001863.pool.root.1
[2026-01-15 11:48:21] -rw-r--r--. 2 boincer umatlas    592397 Jan 15 11:09 input.tar.gz
[2026-01-15 11:48:21] -rw-r--r--. 2 boincer umatlas     15847 Jan 15 11:09 start_atlas.sh
[2026-01-15 11:48:21] drwxrwx--x. 2 boincer umatlas      4096 Jan 15 11:09 shared
[2026-01-15 11:48:21] -rw-r--r--. 1 boincer umatlas         0 Jan 15 11:09 boinc_lockfile
[2026-01-15 11:48:21] -rw-r--r--. 1 boincer umatlas      2509 Jan 15 11:09 pandaJob.out
[2026-01-15 11:48:21] -rw-------. 1 boincer umatlas        57 Jan 15 11:09 setup.sh.local
[2026-01-15 11:48:21] -rw-------. 1 boincer umatlas   1004083 Jan 15 11:09 agis_schedconf.cvmfs.json
[2026-01-15 11:48:21] -rw-------. 1 boincer umatlas   1516246 Jan 15 11:09 agis_ddmendpoints.agis.ALL.json
[2026-01-15 11:48:21] drwx------. 5 boincer umatlas      4096 Jan 15 11:09 pilot3
[2026-01-15 11:48:21] -rw-r--r--. 1 boincer umatlas      7171 Jan 15 11:36 init_data.xml
[2026-01-15 11:48:21] -rw-------. 1 boincer umatlas 146832928 Jan 15 11:47 HITS.48215263._047995.pool.root.1
[2026-01-15 11:48:21] -rw-r--r--. 1 boincer umatlas       530 Jan 15 11:47 boinc_task_state.xml
[2026-01-15 11:48:21] -rw-------. 1 boincer umatlas        95 Jan 15 11:47 pilot_heartbeat.json
[2026-01-15 11:48:21] -rw-------. 1 boincer umatlas      1034 Jan 15 11:47 memory_monitor_summary.json
[2026-01-15 11:48:21] -rw-------. 1 boincer umatlas    318537 Jan 15 11:47 log.48215263._047995.job.log.tgz.1
[2026-01-15 11:48:21] -rw-------. 1 boincer umatlas      7767 Jan 15 11:47 heartbeat.json
[2026-01-15 11:48:21] -rw-r--r--. 1 boincer umatlas      8192 Jan 15 11:48 boinc_mmap_file
[2026-01-15 11:48:21] -rw-r--r--. 1 boincer umatlas        27 Jan 15 11:48 wrapper_checkpoint.txt
[2026-01-15 11:48:21] -rw-------. 1 boincer umatlas       892 Jan 15 11:48 pilotlog.txt
[2026-01-15 11:48:21] -rw-------. 1 boincer umatlas    354676 Jan 15 11:48 log.48215263._047995.job.log.1
[2026-01-15 11:48:21] -rw-------. 1 boincer umatlas       357 Jan 15 11:48 output.list
[2026-01-15 11:48:21] -rw-r--r--. 1 boincer umatlas       620 Jan 15 11:48 runtime_log
[2026-01-15 11:48:21] -rw-------. 1 boincer umatlas    696320 Jan 15 11:48 result.tar.gz
[2026-01-15 11:48:21] -rw-r--r--. 1 boincer umatlas      9334 Jan 15 11:48 runtime_log.err
[2026-01-15 11:48:21] -rw-------. 1 boincer umatlas       650 Jan 15 11:48 fspNDmnRW08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmFLoKDmbill8m.diag
[2026-01-15 11:48:21] -rw-r--r--. 1 boincer umatlas     22234 Jan 15 11:48 stderr.txt
[2026-01-15 11:48:21] HITS file was successfully produced:
[2026-01-15 11:48:21] -rw-------. 1 boincer umatlas 146832928 Jan 15 11:47 shared/HITS.pool.root.1
[2026-01-15 11:48:21]  *** Contents of shared directory: ***
[2026-01-15 11:48:21] total 723648
[2026-01-15 11:48:21] -rw-r--r--. 2 boincer umatlas 592866516 Jan 15 11:09 ATLAS.root_0
[2026-01-15 11:48:21] -rw-r--r--. 2 boincer umatlas    592397 Jan 15 11:09 input.tar.gz
[2026-01-15 11:48:21] -rw-r--r--. 2 boincer umatlas     15847 Jan 15 11:09 start_atlas.sh
[2026-01-15 11:48:21] -rw-------. 1 boincer umatlas 146832928 Jan 15 11:47 HITS.pool.root.1
[2026-01-15 11:48:21] -rw-------. 1 boincer umatlas    696320 Jan 15 11:48 result.tar.gz
11:48:22 (831762): run_atlas exited; CPU time 15467.580445
11:48:22 (831762): called boinc_finish(0)

</stderr_txt>
]]>

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