Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:45:02 (2437295): wrapper (7.7.26015): starting
21:45:02 (2437295): wrapper: running run_atlas (--nthreads 12)
[2026-01-15 21:45:02] Arguments: --nthreads 12
[2026-01-15 21:45:02] Threads: 12
[2026-01-15 21:45:02] Checking for CVMFS
[2026-01-15 21:45:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 21:45:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 21:45:03] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 21:45:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 21:45:04] 2.13.3.0 1705791 11748 221916 155184 2 435 26647498 46080001 19062 130560 0 63261355 99.853 26613276 28807 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2026-01-15 21:45:04] CVMFS is ok
[2026-01-15 21:45:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 21:45:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 21:45:04] Further information can be found at the LHC@home message board.
[2026-01-15 21:45:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 21:45:04] Checking for apptainer binary...
[2026-01-15 21:45:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 21:45:04] Running /usr/bin/apptainer --version
[2026-01-15 21:45:04] apptainer version 1.4.5-2.el9
[2026-01-15 21:45:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 21:45:05] mff2101.farm.particle.cz
[2026-01-15 21:45:05] apptainer works
[2026-01-15 21:45:05] Set ATHENA_PROC_NUMBER=12
[2026-01-15 21:45:05] Set ATHENA_CORE_NUMBER=12
[2026-01-15 21:45:05] Starting ATLAS job with PandaID=6970395955
[2026-01-15 21:45:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 22:54:01]  *** The last 200 lines of the pilot log: ***
[2026-01-15 22:54:01] 2026-01-15 21:49:48,921 | INFO     | this job has now completed (state=finished)
[2026-01-15 22:54:01] 2026-01-15 21:49:48,921 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-15 22:54:01] 2026-01-15 21:49:48,921 | INFO     | log transfer has been attempted: DONE
[2026-01-15 22:54:01] 2026-01-15 21:49:48,921 | INFO     | job 6970395955 has finished - writing final server update
[2026-01-15 22:54:01] 2026-01-15 21:49:48,921 | INFO     | total number of processed events: 400 (read)
[2026-01-15 22:54:01] 2026-01-15 21:49:48,922 | INFO     | executing command: lscpu
[2026-01-15 22:54:01] 2026-01-15 21:49:49,026 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-15 22:54:01] 2026-01-15 21:49:50,090 | INFO     | monitor loop #288: job 0:6970395955 is in state 'finished'
[2026-01-15 22:54:01] 2026-01-15 21:49:50,091 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 22:54:01] 2026-01-15 21:49:50,254 | INFO     | time since job start (3781s) is within the limit (349056.0s)
[2026-01-15 22:54:01] 2026-01-15 21:49:52,261 | INFO     | time since job start (3783s) is within the limit (349056.0s)
[2026-01-15 22:54:01] 2026-01-15 21:49:52,596 | INFO     | monitor loop #289: job 0:6970395955 is in state 'finished'
[2026-01-15 22:54:01] 2026-01-15 21:49:52,596 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 22:54:01] 2026-01-15 21:49:54,268 | INFO     | time since job start (3785s) is within the limit (349056.0s)
[2026-01-15 22:54:01] 2026-01-15 21:49:55,101 | INFO     | monitor loop #290: job 0:6970395955 is in state 'finished'
[2026-01-15 22:54:01] 2026-01-15 21:49:55,101 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 22:54:01] 2026-01-15 21:49:56,275 | INFO     | time since job start (3787s) is within the limit (349056.0s)
[2026-01-15 22:54:01] 2026-01-15 21:49:57,606 | INFO     | monitor loop #291: job 0:6970395955 is in state 'finished'
[2026-01-15 22:54:01] 2026-01-15 21:49:57,606 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 22:54:01] 2026-01-15 21:49:58,282 | INFO     | time since job start (3789s) is within the limit (349056.0s)
[2026-01-15 22:54:01] 2026-01-15 21:50:00,111 | INFO     | monitor loop #292: job 0:6970395955 is in state 'finished'
[2026-01-15 22:54:01] 2026-01-15 21:50:00,111 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 22:54:01] 2026-01-15 21:50:00,289 | INFO     | time since job start (3791s) is within the limit (349056.0s)
[2026-01-15 22:54:01] 2026-01-15 21:50:02,296 | INFO     | time since job start (3793s) is within the limit (349056.0s)
[2026-01-15 22:54:01] 2026-01-15 21:50:02,616 | INFO     | monitor loop #293: job 0:6970395955 is in state 'finished'
[2026-01-15 22:54:01] 2026-01-15 21:50:02,616 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 22:54:01] 2026-01-15 21:50:04,303 | INFO     | time since job start (3795s) is within the limit (349056.0s)
[2026-01-15 22:54:01] 2026-01-15 21:50:05,124 | INFO     | monitor loop #294: job 0:6970395955 is in state 'finished'
[2026-01-15 22:54:01] 2026-01-15 21:50:05,124 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 22:54:01] 2026-01-15 21:50:05,922 | INFO     | PID=2442949 has CPU usage=8.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 22:54:01] 2026-01-15 21:50:05,923 | INFO     | .. there are 19 such processes running
[2026-01-15 22:54:01] 2026-01-15 21:50:06,924 | INFO     | time since job start (3797s) is within the limit (349056.0s)
[2026-01-15 22:54:01] 2026-01-15 21:50:07,628 | INFO     | monitor loop #295: job 0:6970395955 is in state 'finished'
[2026-01-15 22:54:01] 2026-01-15 21:50:07,628 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 22:54:01] 2026-01-15 21:50:08,931 | INFO     | time since job start (3799s) is within the limit (349056.0s)
[2026-01-15 22:54:01] 2026-01-15 21:50:09,451 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-15 22:54:01] 2026-01-15 21:50:09,466 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2749.501302083334
[2026-01-15 22:54:01] 2026-01-15 21:50:09,483 | INFO     | using path: /scratch/.boinc/slots/1/PanDA_Pilot-6970395955/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 22:54:01] 2026-01-15 21:50:09,484 | INFO     | extracted standard info from prmon json
[2026-01-15 22:54:01] 2026-01-15 21:50:09,484 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 22:54:01] 2026-01-15 21:50:09,484 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 22:54:01] 2026-01-15 21:50:09,485 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 22:54:01] 2026-01-15 21:50:09,485 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 22:54:01] 2026-01-15 21:50:09,486 | INFO     | fitting pss+swap vs Time
[2026-01-15 22:54:01] 2026-01-15 21:50:09,486 | INFO     | sum of square deviations: 43584073.0
[2026-01-15 22:54:01] 2026-01-15 21:50:09,487 | INFO     | sum of deviations: 4048095267.5
[2026-01-15 22:54:01] 2026-01-15 21:50:09,487 | INFO     | mean x: 1768512073.5
[2026-01-15 22:54:01] 2026-01-15 21:50:09,487 | INFO     | mean y: 2698667.3653846155
[2026-01-15 22:54:01] 2026-01-15 21:50:09,487 | INFO     | intersect: -164256969199.1959
[2026-01-15 22:54:01] 2026-01-15 21:50:09,487 | INFO     | chi2: 0.30303599459019764
[2026-01-15 22:54:01] 2026-01-15 21:50:09,487 | INFO     | current memory leak: 92.88 B/s (using 52 data points, chi2=0.30)
[2026-01-15 22:54:01] 2026-01-15 21:50:09,487 | INFO     | could have reported an average CPU frequency of 2723 MHz (6 samples)
[2026-01-15 22:54:01] 2026-01-15 21:50:09,488 | INFO     | ..............................
[2026-01-15 22:54:01] 2026-01-15 21:50:09,488 | INFO     | . Timing measurements:
[2026-01-15 22:54:01] 2026-01-15 21:50:09,488 | INFO     | . get job = 0 s
[2026-01-15 22:54:01] 2026-01-15 21:50:09,488 | INFO     | . initial setup = 8 s
[2026-01-15 22:54:01] 2026-01-15 21:50:09,488 | INFO     | . payload setup = 65 s
[2026-01-15 22:54:01] 2026-01-15 21:50:09,488 | INFO     | . stage-in = 0 s
[2026-01-15 22:54:01] 2026-01-15 21:50:09,488 | INFO     | . payload execution = 3611 s
[2026-01-15 22:54:01] 2026-01-15 21:50:09,488 | INFO     | . stage-out = 1 s
[2026-01-15 22:54:01] 2026-01-15 21:50:09,488 | INFO     | . log creation = 0 s
[2026-01-15 22:54:01] 2026-01-15 21:50:09,488 | INFO     | ..............................
[2026-01-15 22:54:01] 2026-01-15 21:50:09,590 | INFO     | 
[2026-01-15 22:54:01] 2026-01-15 21:50:09,590 | INFO     | job summary report
[2026-01-15 22:54:01] 2026-01-15 21:50:09,590 | INFO     | --------------------------------------------------
[2026-01-15 22:54:01] 2026-01-15 21:50:09,590 | INFO     | PanDA job id: 6970395955
[2026-01-15 22:54:01] 2026-01-15 21:50:09,590 | INFO     | task id: 48215263
[2026-01-15 22:54:01] 2026-01-15 21:50:09,590 | INFO     | errors: (none)
[2026-01-15 22:54:01] 2026-01-15 21:50:09,591 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-15 22:54:01] 2026-01-15 21:50:09,591 | INFO     | pilot state: finished 
[2026-01-15 22:54:01] 2026-01-15 21:50:09,591 | INFO     | transexitcode: 0
[2026-01-15 22:54:01] 2026-01-15 21:50:09,591 | INFO     | exeerrorcode: 0
[2026-01-15 22:54:01] 2026-01-15 21:50:09,591 | INFO     | exeerrordiag: 
[2026-01-15 22:54:01] 2026-01-15 21:50:09,591 | INFO     | exitcode: 0
[2026-01-15 22:54:01] 2026-01-15 21:50:09,591 | INFO     | exitmsg: OK
[2026-01-15 22:54:01] 2026-01-15 21:50:09,591 | INFO     | cpuconsumptiontime: 25941 s
[2026-01-15 22:54:01] 2026-01-15 21:50:09,591 | INFO     | nevents: 400
[2026-01-15 22:54:01] 2026-01-15 21:50:09,591 | INFO     | neventsw: 0
[2026-01-15 22:54:01] 2026-01-15 21:50:09,591 | INFO     | pid: 2455159
[2026-01-15 22:54:01] 2026-01-15 21:50:09,591 | INFO     | pgrp: 2455159
[2026-01-15 22:54:01] 2026-01-15 21:50:09,591 | INFO     | corecount: 12
[2026-01-15 22:54:01] 2026-01-15 21:50:09,591 | INFO     | event service: False
[2026-01-15 22:54:01] 2026-01-15 21:50:09,592 | INFO     | sizes: {0: 2283726, 1: 2283981, 2: 2283981, 12: 2284009, 23: 2284037, 34: 2284065, 45: 2284221, 48: 2284511, 55: 2284539, 3681: 2310332, 3682: 2310331, 3684: 23197
[2026-01-15 22:54:01] 2026-01-15 21:50:09,592 | INFO     | --------------------------------------------------
[2026-01-15 22:54:01] 2026-01-15 21:50:09,592 | INFO     | 
[2026-01-15 22:54:01] 2026-01-15 21:50:09,592 | INFO     | executing command: ls -lF /scratch/.boinc/slots/1
[2026-01-15 22:54:01] 2026-01-15 21:50:09,649 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:50:09,649 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:50:09,649 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:50:09,649 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:50:09,649 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:50:09,649 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:50:09,650 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:50:09,650 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:50:09,650 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:50:09,650 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:50:09,650 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:50:09,650 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:50:09,650 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:50:09,650 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:50:09,650 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:50:09,650 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:50:09,650 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:50:09,651 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 22:54:01] 2026-01-15 21:50:09,651 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:50:09,651 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:50:09,651 | INFO     | job 6970395955 has completed (purged errors)
[2026-01-15 22:54:01] 2026-01-15 21:50:09,651 | INFO     | overall cleanup function is called
[2026-01-15 22:54:01] 2026-01-15 21:50:10,662 | INFO     | --- collectZombieJob: --- 10, [2455159]
[2026-01-15 22:54:01] 2026-01-15 21:50:10,662 | INFO     | zombie collector waiting for pid 2455159
[2026-01-15 22:54:01] 2026-01-15 21:50:10,662 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 22:54:01] 2026-01-15 21:50:10,662 | INFO     | collected zombie processes
[2026-01-15 22:54:01] 2026-01-15 21:50:10,662 | INFO     | will attempt to kill all subprocesses of pid=2455159
[2026-01-15 22:54:01] 2026-01-15 21:50:11,175 | INFO     | process IDs to be killed: [2455159] (in reverse order)
[2026-01-15 22:54:01] 2026-01-15 21:50:11,385 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 22:54:01] 2026-01-15 21:50:11,385 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 22:54:01] 2026-01-15 21:50:11,405 | INFO     | did not find any defunct processes belonging to 2455159
[2026-01-15 22:54:01] 2026-01-15 21:50:11,422 | INFO     | did not find any defunct processes belonging to 2455159
[2026-01-15 22:54:01] 2026-01-15 21:50:11,423 | INFO     | ready for new job
[2026-01-15 22:54:01] 2026-01-15 21:50:11,423 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 22:54:01] 2026-01-15 21:50:11,425 | INFO     | ***************************************
[2026-01-15 22:54:01] 2026-01-15 21:50:11,425 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 22:54:01] 2026-01-15 21:50:11,425 | INFO     | ***************************************
[2026-01-15 22:54:01] 2026-01-15 21:50:11,425 | INFO     | 
[2026-01-15 22:54:01] 2026-01-15 21:50:11,432 | INFO     | architecture information:
[2026-01-15 22:54:01] 2026-01-15 21:50:11,433 | INFO     | executing command: cat /etc/os-release
[2026-01-15 22:54:01] 2026-01-15 21:50:11,469 | INFO     | cat /etc/os-release:
[2026-01-15 22:54:01] NAME="CentOS Linux"
[2026-01-15 22:54:01] VERSION="7 (Core)"
[2026-01-15 22:54:01] ID="centos"
[2026-01-15 22:54:01] ID_LIKE="rhel fedora"
[2026-01-15 22:54:01] VERSION_ID="7"
[2026-01-15 22:54:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 22:54:01] ANSI_COLOR="0;31"
[2026-01-15 22:54:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 22:54:01] HOME_URL="https://www.centos.org/"
[2026-01-15 22:54:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 22:54:01] 
[2026-01-15 22:54:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 22:54:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 22:54:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 22:54:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 22:54:01] 
[2026-01-15 22:54:01] 2026-01-15 21:50:11,469 | INFO     | ***************************************
[2026-01-15 22:54:01] 2026-01-15 21:50:11,973 | INFO     | executing command: df -mP /scratch/.boinc/slots/1
[2026-01-15 22:54:01] 2026-01-15 21:50:12,143 | INFO     | sufficient remaining disk space (1538686713856 B)
[2026-01-15 22:54:01] 2026-01-15 21:50:12,144 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 22:54:01] 2026-01-15 21:50:12,144 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 22:54:01] 2026-01-15 21:50:12,144 | INFO     | update_server=False
[2026-01-15 22:54:01] 2026-01-15 21:50:12,144 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 22:54:01] 2026-01-15 21:50:12,145 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 22:54:01] 2026-01-15 21:50:12,358 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 22:54:01] 2026-01-15 21:50:12,499 | INFO     | all data control threads have been joined
[2026-01-15 22:54:01] 2026-01-15 21:50:12,643 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-15 22:54:01] 2026-01-15 21:50:12,643 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-15 22:54:01] 2026-01-15 21:50:12,643 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 22:54:01] 2026-01-15 21:50:12,643 | INFO     | will abort loop
[2026-01-15 22:54:01] 2026-01-15 21:50:13,150 | INFO     | [job] retrieve thread has finished
[2026-01-15 22:54:01] 2026-01-15 21:50:13,192 | INFO     | [payload] failed_post thread has finished
[2026-01-15 22:54:01] 2026-01-15 21:50:13,299 | INFO     | all job control threads have been joined
[2026-01-15 22:54:01] 2026-01-15 21:50:13,377 | INFO     | all payload control threads have been joined
[2026-01-15 22:54:01] 2026-01-15 21:50:13,504 | INFO     | [data] control thread has finished
[2026-01-15 22:54:01] 2026-01-15 21:50:13,575 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 22:54:01] 2026-01-15 21:50:13,649 | INFO     | [job] job monitor thread has finished
[2026-01-15 22:54:01] 2026-01-15 21:50:13,807 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 22:54:01] 2026-01-15 21:50:13,923 | INFO     | [payload] validate_post thread has finished
[2026-01-15 22:54:01] 2026-01-15 21:50:14,152 | INFO     | [data] copytool_out thread has finished
[2026-01-15 22:54:01] 2026-01-15 21:50:14,305 | INFO     | [job] control thread has finished
[2026-01-15 22:54:01] 2026-01-15 21:50:14,335 | INFO     | [job] validate thread has finished
[2026-01-15 22:54:01] 2026-01-15 21:50:14,383 | INFO     | [payload] control thread has finished
[2026-01-15 22:54:01] 2026-01-15 21:50:14,575 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 22:54:01] 2026-01-15 21:50:14,603 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 22:54:01] 2026-01-15 21:50:14,605 | INFO     | [data] copytool_in thread has finished
[2026-01-15 22:54:01] 2026-01-15 21:50:15,609 | INFO     | [job] queue monitor thread has finished
[2026-01-15 22:54:01] 2026-01-15 21:50:16,367 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 22:54:01] 2026-01-15 21:50:23,174 | INFO     | job.realtimelogging is not enabled
[2026-01-15 22:54:01] 2026-01-15 21:50:24,180 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 22:54:01] 2026-01-15 21:50:42,583 | INFO     | PID=2442949 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 22:54:01] 2026-01-15 21:50:42,583 | INFO     | .. there are 18 such processes running
[2026-01-15 22:54:01] 2026-01-15 21:50:42,584 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 22:54:01] 2026-01-15 21:50:42,584 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 22:54:01] 2026-01-15 21:50:42,584 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 22:54:01] 2026-01-15 21:50:55,120 | INFO     | [monitor] cgroup control has ended
[2026-01-15 22:54:01] 2026-01-15 21:50:55,734 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140371730900800)>', '<ExcThread(monitor, started 140371359143680)>']
[2026-01-15 22:54:01] 2026-01-15 21:50:56,670 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 22:54:01] 2026-01-15 21:50:56,670 | INFO     | [monitor] control thread has ended
[2026-01-15 22:54:01] 2026-01-15 21:51:00,760 | INFO     | all workflow threads have been joined
[2026-01-15 22:54:01] 2026-01-15 21:51:00,760 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 22:54:01] 2026-01-15 21:51:00,760 | INFO     | traces error code: 0
[2026-01-15 22:54:01] 2026-01-15 21:51:00,761 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 22:54:01] 2026-01-15 21:51:00,966 [wrapper] ==== pilot stdout END ====
[2026-01-15 22:54:01] 2026-01-15 21:51:01,006 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 22:54:01] 2026-01-15 21:51:01,041 [wrapper] pilotpid: 2442949
[2026-01-15 22:54:01] 2026-01-15 21:51:01,067 [wrapper] Pilot exit status: 0
[2026-01-15 22:54:01] 2026-01-15 21:51:01,136 [wrapper] pandaids: 6970395955
[2026-01-15 22:54:01] 2026-01-15 21:51:01,264 [wrapper] cleanup supervisor_pilot 2599629 2442950
[2026-01-15 22:54:01] 2026-01-15 21:51:01,267 [wrapper] Test setup, not cleaning
[2026-01-15 22:54:01] 2026-01-15 21:51:01,271 [wrapper] apfmon messages muted
[2026-01-15 22:54:01] 2026-01-15 21:51:01,274 [wrapper] ==== wrapper stdout END ====
[2026-01-15 22:54:01] 2026-01-15 21:51:01,281 [wrapper] ==== wrapper stderr END ====
[2026-01-15 22:54:01]  *** Error codes and diagnostics ***
[2026-01-15 22:54:01]     "exeErrorCode": 0,
[2026-01-15 22:54:01]     "exeErrorDiag": "",
[2026-01-15 22:54:01]     "pilotErrorCode": 0,
[2026-01-15 22:54:01]     "pilotErrorDiag": "",
[2026-01-15 22:54:01]  *** Listing of results directory ***
[2026-01-15 22:54:01] total 736344
[2026-01-15 22:54:01] -rw-r--r-- 1 boinc boinc    579449 Jan 15 07:52 pilot3.tar.gz
[2026-01-15 22:54:01] -rw-r--r-- 1 boinc boinc      5112 Jan 15 07:55 queuedata.json
[2026-01-15 22:54:01] -rwx------ 1 boinc boinc     36322 Jan 15 07:55 runpilot2-wrapper.sh
[2026-01-15 22:54:01] -rw-r--r-- 1 boinc boinc       100 Jan 15 21:44 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 22:54:01] -rwxr-xr-x 1 boinc boinc      7986 Jan 15 21:44 run_atlas
[2026-01-15 22:54:01] -rw-r--r-- 1 boinc boinc       105 Jan 15 21:44 job.xml
[2026-01-15 22:54:01] -rw-r--r-- 1 boinc boinc      6675 Jan 15 21:45 init_data.xml
[2026-01-15 22:54:01] -rw-r--r-- 2 boinc boinc 592952826 Jan 15 21:45 EVNT.32794306._001860.pool.root.1
[2026-01-15 22:54:01] -rw-r--r-- 2 boinc boinc     15847 Jan 15 21:45 start_atlas.sh
[2026-01-15 22:54:01] drwxrwx--x 2 boinc boinc      4096 Jan 15 21:45 shared
[2026-01-15 22:54:01] -rw-r--r-- 2 boinc boinc    592404 Jan 15 21:45 input.tar.gz
[2026-01-15 22:54:01] -rw-r--r-- 1 boinc boinc         0 Jan 15 21:45 boinc_lockfile
[2026-01-15 22:54:01] -rw-r--r-- 1 boinc boinc      2509 Jan 15 21:45 pandaJob.out
[2026-01-15 22:54:01] -rw------- 1 boinc boinc   1004075 Jan 15 21:46 agis_schedconf.cvmfs.json
[2026-01-15 22:54:01] -rw------- 1 boinc boinc   1516246 Jan 15 21:46 agis_ddmendpoints.agis.ALL.json
[2026-01-15 22:54:01] drwx------ 5 boinc boinc      4096 Jan 15 21:46 pilot3
[2026-01-15 22:54:01] -rw------- 1 boinc boinc 155267029 Jan 15 22:49 HITS.48215263._047926.pool.root.1
[2026-01-15 22:54:01] -rw-r--r-- 1 boinc boinc       530 Jan 15 22:49 boinc_task_state.xml
[2026-01-15 22:54:01] -rw------- 1 boinc boinc      1023 Jan 15 22:49 memory_monitor_summary.json
[2026-01-15 22:54:01] -rw------- 1 boinc boinc        95 Jan 15 22:49 pilot_heartbeat.json
[2026-01-15 22:54:01] -rw------- 1 boinc boinc    378511 Jan 15 22:49 log.48215263._047926.job.log.tgz.1
[2026-01-15 22:54:01] -rw------- 1 boinc boinc      7780 Jan 15 22:50 heartbeat.json
[2026-01-15 22:54:01] -rw------- 1 boinc boinc      5085 Jan 15 22:51 pilotlog.txt
[2026-01-15 22:54:01] -rw------- 1 boinc boinc    553022 Jan 15 22:51 log.48215263._047926.job.log.1
[2026-01-15 22:54:01] -rw------- 1 boinc boinc       357 Jan 15 22:51 output.list
[2026-01-15 22:54:01] -rw-r--r-- 1 boinc boinc       620 Jan 15 22:51 runtime_log
[2026-01-15 22:54:01] -rw------- 1 boinc boinc    952320 Jan 15 22:51 result.tar.gz
[2026-01-15 22:54:01] -rw-r--r-- 1 boinc boinc      8880 Jan 15 22:51 runtime_log.err
[2026-01-15 22:54:01] -rw------- 1 boinc boinc       663 Jan 15 22:51 2ugMDmnRW08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmsKoKDmvYQPTo.diag
[2026-01-15 22:54:01] -rw-r--r-- 1 boinc boinc        26 Jan 15 22:53 wrapper_checkpoint.txt
[2026-01-15 22:54:01] -rw-r--r-- 1 boinc boinc      8192 Jan 15 22:54 boinc_mmap_file
[2026-01-15 22:54:01] -rw-r--r-- 1 boinc boinc     22380 Jan 15 22:54 stderr.txt
[2026-01-15 22:54:01] HITS file was successfully produced:
[2026-01-15 22:54:01] -rw------- 1 boinc boinc 155267029 Jan 15 22:49 shared/HITS.pool.root.1
[2026-01-15 22:54:01]  *** Contents of shared directory: ***
[2026-01-15 22:54:01] total 732220
[2026-01-15 22:54:01] -rw-r--r-- 2 boinc boinc 592952826 Jan 15 21:45 ATLAS.root_0
[2026-01-15 22:54:01] -rw-r--r-- 2 boinc boinc     15847 Jan 15 21:45 start_atlas.sh
[2026-01-15 22:54:01] -rw-r--r-- 2 boinc boinc    592404 Jan 15 21:45 input.tar.gz
[2026-01-15 22:54:01] -rw------- 1 boinc boinc 155267029 Jan 15 22:49 HITS.pool.root.1
[2026-01-15 22:54:01] -rw------- 1 boinc boinc    952320 Jan 15 22:51 result.tar.gz
22:54:03 (2437295): run_atlas exited; CPU time 26032.755582
22:54:03 (2437295): called boinc_finish(0)

</stderr_txt>
]]>

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