Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:41:39 (2215894): wrapper (7.7.26015): starting
20:41:39 (2215894): wrapper: running run_atlas (--nthreads 12)
[2026-01-15 20:41:39] Arguments: --nthreads 12
[2026-01-15 20:41:39] Threads: 12
[2026-01-15 20:41:39] Checking for CVMFS
[2026-01-15 20:41:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 20:41:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 20:41:40] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 20:41:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 20:41:40] 2.13.3.0 1705791 11684 234564 155181 2 748 26512589 46080001 19315 130560 0 62850706 99.852 26578674 28807 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2026-01-15 20:41:40] CVMFS is ok
[2026-01-15 20:41:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 20:41:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 20:41:40] Further information can be found at the LHC@home message board.
[2026-01-15 20:41:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 20:41:40] Checking for apptainer binary...
[2026-01-15 20:41:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 20:41:40] Running /usr/bin/apptainer --version
[2026-01-15 20:41:40] apptainer version 1.4.5-2.el9
[2026-01-15 20:41:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 20:41:41] mff2101.farm.particle.cz
[2026-01-15 20:41:41] apptainer works
[2026-01-15 20:44:24] Set ATHENA_PROC_NUMBER=12
[2026-01-15 20:44:24] Set ATHENA_CORE_NUMBER=12
[2026-01-15 20:44:24] Starting ATLAS job with PandaID=6970457235
[2026-01-15 20:44:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 22:54:01]  *** The last 200 lines of the pilot log: ***
[2026-01-15 22:54:01] 2026-01-15 21:08:01,861 | INFO     | time since job start (4916s) is within the limit (349056.0s)
[2026-01-15 22:54:01] 2026-01-15 21:08:02,383 | INFO     | monitor loop #362: job 0:6970457235 is in state 'finished'
[2026-01-15 22:54:01] 2026-01-15 21:08:02,383 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 22:54:01] 2026-01-15 21:08:03,868 | INFO     | time since job start (4918s) is within the limit (349056.0s)
[2026-01-15 22:54:01] 2026-01-15 21:08:04,891 | INFO     | monitor loop #363: job 0:6970457235 is in state 'finished'
[2026-01-15 22:54:01] 2026-01-15 21:08:04,891 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 22:54:01] 2026-01-15 21:08:05,874 | INFO     | time since job start (4920s) is within the limit (349056.0s)
[2026-01-15 22:54:01] 2026-01-15 21:08:07,396 | INFO     | monitor loop #364: job 0:6970457235 is in state 'finished'
[2026-01-15 22:54:01] 2026-01-15 21:08:07,396 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 22:54:01] 2026-01-15 21:08:07,883 | INFO     | time since job start (4922s) is within the limit (349056.0s)
[2026-01-15 22:54:01] 2026-01-15 21:08:09,895 | INFO     | time since job start (4924s) is within the limit (349056.0s)
[2026-01-15 22:54:01] 2026-01-15 21:08:09,906 | INFO     | monitor loop #365: job 0:6970457235 is in state 'finished'
[2026-01-15 22:54:01] 2026-01-15 21:08:09,906 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 22:54:01] 2026-01-15 21:08:11,903 | INFO     | time since job start (4926s) is within the limit (349056.0s)
[2026-01-15 22:54:01] 2026-01-15 21:08:12,417 | INFO     | monitor loop #366: job 0:6970457235 is in state 'finished'
[2026-01-15 22:54:01] 2026-01-15 21:08:12,417 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 22:54:01] 2026-01-15 21:08:13,913 | INFO     | time since job start (4928s) is within the limit (349056.0s)
[2026-01-15 22:54:01] 2026-01-15 21:08:14,932 | INFO     | monitor loop #367: job 0:6970457235 is in state 'finished'
[2026-01-15 22:54:01] 2026-01-15 21:08:14,932 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 22:54:01] 2026-01-15 21:08:15,925 | INFO     | time since job start (4930s) is within the limit (349056.0s)
[2026-01-15 22:54:01] 2026-01-15 21:08:17,443 | INFO     | monitor loop #368: job 0:6970457235 is in state 'finished'
[2026-01-15 22:54:01] 2026-01-15 21:08:17,443 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 22:54:01] 2026-01-15 21:08:17,934 | INFO     | time since job start (4932s) is within the limit (349056.0s)
[2026-01-15 22:54:01] 2026-01-15 21:08:19,944 | INFO     | time since job start (4934s) is within the limit (349056.0s)
[2026-01-15 22:54:01] 2026-01-15 21:08:19,953 | INFO     | monitor loop #369: job 0:6970457235 is in state 'finished'
[2026-01-15 22:54:01] 2026-01-15 21:08:19,953 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 22:54:01] 2026-01-15 21:08:21,952 | INFO     | time since job start (4936s) is within the limit (349056.0s)
[2026-01-15 22:54:01] 2026-01-15 21:08:22,459 | INFO     | monitor loop #370: job 0:6970457235 is in state 'finished'
[2026-01-15 22:54:01] 2026-01-15 21:08:22,459 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 22:54:01] 2026-01-15 21:08:23,995 | INFO     | PID=2234038 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 22:54:01] 2026-01-15 21:08:23,995 | INFO     | .. there are 23 such processes running
[2026-01-15 22:54:01] 2026-01-15 21:08:24,964 | INFO     | monitor loop #371: job 0:6970457235 is in state 'finished'
[2026-01-15 22:54:01] 2026-01-15 21:08:24,964 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 22:54:01] 2026-01-15 21:08:24,996 | INFO     | time since job start (4939s) is within the limit (349056.0s)
[2026-01-15 22:54:01] 2026-01-15 21:08:27,008 | INFO     | time since job start (4942s) is within the limit (349056.0s)
[2026-01-15 22:54:01] 2026-01-15 21:08:27,475 | INFO     | monitor loop #372: job 0:6970457235 is in state 'finished'
[2026-01-15 22:54:01] 2026-01-15 21:08:27,475 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 22:54:01] 2026-01-15 21:08:28,993 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-15 22:54:01] 2026-01-15 21:08:29,017 | INFO     | time since job start (4944s) is within the limit (349056.0s)
[2026-01-15 22:54:01] 2026-01-15 21:08:29,026 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2710.282947916666
[2026-01-15 22:54:01] 2026-01-15 21:08:29,059 | INFO     | using path: /scratch/.boinc/slots/4/PanDA_Pilot-6970457235/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 22:54:01] 2026-01-15 21:08:29,060 | INFO     | extracted standard info from prmon json
[2026-01-15 22:54:01] 2026-01-15 21:08:29,060 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 22:54:01] 2026-01-15 21:08:29,060 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 22:54:01] 2026-01-15 21:08:29,061 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 22:54:01] 2026-01-15 21:08:29,061 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 22:54:01] 2026-01-15 21:08:29,067 | INFO     | fitting pss+swap vs Time
[2026-01-15 22:54:01] 2026-01-15 21:08:29,067 | INFO     | sum of square deviations: 110960220.0
[2026-01-15 22:54:01] 2026-01-15 21:08:29,068 | INFO     | sum of deviations: 6131548895.000001
[2026-01-15 22:54:01] 2026-01-15 21:08:29,068 | INFO     | mean x: 1768508997.0
[2026-01-15 22:54:01] 2026-01-15 21:08:29,068 | INFO     | mean y: 2708197.1690140846
[2026-01-15 22:54:01] 2026-01-15 21:08:29,068 | INFO     | intersect: -97723300153.86804
[2026-01-15 22:54:01] 2026-01-15 21:08:29,068 | INFO     | chi2: 0.8106119046900446
[2026-01-15 22:54:01] 2026-01-15 21:08:29,068 | INFO     | current memory leak: 55.26 B/s (using 71 data points, chi2=0.81)
[2026-01-15 22:54:01] 2026-01-15 21:08:29,069 | INFO     | could have reported an average CPU frequency of 2722 MHz (6 samples)
[2026-01-15 22:54:01] 2026-01-15 21:08:29,069 | INFO     | ..............................
[2026-01-15 22:54:01] 2026-01-15 21:08:29,069 | INFO     | . Timing measurements:
[2026-01-15 22:54:01] 2026-01-15 21:08:29,069 | INFO     | . get job = 0 s
[2026-01-15 22:54:01] 2026-01-15 21:08:29,069 | INFO     | . initial setup = 5 s
[2026-01-15 22:54:01] 2026-01-15 21:08:29,069 | INFO     | . payload setup = 59 s
[2026-01-15 22:54:01] 2026-01-15 21:08:29,069 | INFO     | . stage-in = 0 s
[2026-01-15 22:54:01] 2026-01-15 21:08:29,069 | INFO     | . payload execution = 4744 s
[2026-01-15 22:54:01] 2026-01-15 21:08:29,069 | INFO     | . stage-out = 2 s
[2026-01-15 22:54:01] 2026-01-15 21:08:29,069 | INFO     | . log creation = 0 s
[2026-01-15 22:54:01] 2026-01-15 21:08:29,069 | INFO     | ..............................
[2026-01-15 22:54:01] 2026-01-15 21:08:29,341 | INFO     | 
[2026-01-15 22:54:01] 2026-01-15 21:08:29,341 | INFO     | job summary report
[2026-01-15 22:54:01] 2026-01-15 21:08:29,341 | INFO     | --------------------------------------------------
[2026-01-15 22:54:01] 2026-01-15 21:08:29,341 | INFO     | PanDA job id: 6970457235
[2026-01-15 22:54:01] 2026-01-15 21:08:29,341 | INFO     | task id: 48188632
[2026-01-15 22:54:01] 2026-01-15 21:08:29,341 | INFO     | errors: (none)
[2026-01-15 22:54:01] 2026-01-15 21:08:29,341 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-15 22:54:01] 2026-01-15 21:08:29,342 | INFO     | pilot state: finished 
[2026-01-15 22:54:01] 2026-01-15 21:08:29,342 | INFO     | transexitcode: 0
[2026-01-15 22:54:01] 2026-01-15 21:08:29,342 | INFO     | exeerrorcode: 0
[2026-01-15 22:54:01] 2026-01-15 21:08:29,342 | INFO     | exeerrordiag: 
[2026-01-15 22:54:01] 2026-01-15 21:08:29,342 | INFO     | exitcode: 0
[2026-01-15 22:54:01] 2026-01-15 21:08:29,342 | INFO     | exitmsg: OK
[2026-01-15 22:54:01] 2026-01-15 21:08:29,342 | INFO     | cpuconsumptiontime: 35828 s
[2026-01-15 22:54:01] 2026-01-15 21:08:29,342 | INFO     | nevents: 400
[2026-01-15 22:54:01] 2026-01-15 21:08:29,342 | INFO     | neventsw: 0
[2026-01-15 22:54:01] 2026-01-15 21:08:29,342 | INFO     | pid: 2254236
[2026-01-15 22:54:01] 2026-01-15 21:08:29,342 | INFO     | pgrp: 2254236
[2026-01-15 22:54:01] 2026-01-15 21:08:29,342 | INFO     | corecount: 12
[2026-01-15 22:54:01] 2026-01-15 21:08:29,343 | INFO     | event service: False
[2026-01-15 22:54:01] 2026-01-15 21:08:29,343 | INFO     | sizes: {0: 2283939, 1: 2284138, 12: 2284138, 23: 2284166, 33: 2284194, 43: 2284512, 44: 2284668, 4808: 2311011, 4811: 2320011, 4812: 2320067, 4853: 2320261}
[2026-01-15 22:54:01] 2026-01-15 21:08:29,343 | INFO     | --------------------------------------------------
[2026-01-15 22:54:01] 2026-01-15 21:08:29,343 | INFO     | 
[2026-01-15 22:54:01] 2026-01-15 21:08:29,343 | INFO     | executing command: ls -lF /scratch/.boinc/slots/4
[2026-01-15 22:54:01] 2026-01-15 21:08:29,468 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:08:29,469 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:08:29,469 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:08:29,469 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:08:29,469 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:08:29,469 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:08:29,469 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:08:29,469 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:08:29,469 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:08:29,469 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:08:29,470 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:08:29,470 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:08:29,470 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:08:29,470 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:08:29,470 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:08:29,470 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:08:29,470 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:08:29,470 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 22:54:01] 2026-01-15 21:08:29,470 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:08:29,471 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 22:54:01] 2026-01-15 21:08:29,471 | INFO     | job 6970457235 has completed (purged errors)
[2026-01-15 22:54:01] 2026-01-15 21:08:29,471 | INFO     | overall cleanup function is called
[2026-01-15 22:54:01] 2026-01-15 21:08:30,485 | INFO     | --- collectZombieJob: --- 10, [2254236]
[2026-01-15 22:54:01] 2026-01-15 21:08:30,485 | INFO     | zombie collector waiting for pid 2254236
[2026-01-15 22:54:01] 2026-01-15 21:08:30,485 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 22:54:01] 2026-01-15 21:08:30,485 | INFO     | collected zombie processes
[2026-01-15 22:54:01] 2026-01-15 21:08:30,485 | INFO     | will attempt to kill all subprocesses of pid=2254236
[2026-01-15 22:54:01] 2026-01-15 21:08:31,383 | INFO     | process IDs to be killed: [2254236] (in reverse order)
[2026-01-15 22:54:01] 2026-01-15 21:08:31,740 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 22:54:01] 2026-01-15 21:08:31,741 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 22:54:01] 2026-01-15 21:08:31,762 | INFO     | did not find any defunct processes belonging to 2254236
[2026-01-15 22:54:01] 2026-01-15 21:08:31,793 | INFO     | did not find any defunct processes belonging to 2254236
[2026-01-15 22:54:01] 2026-01-15 21:08:31,794 | INFO     | ready for new job
[2026-01-15 22:54:01] 2026-01-15 21:08:31,794 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 22:54:01] 2026-01-15 21:08:31,796 | INFO     | ***************************************
[2026-01-15 22:54:01] 2026-01-15 21:08:31,796 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 22:54:01] 2026-01-15 21:08:31,796 | INFO     | ***************************************
[2026-01-15 22:54:01] 2026-01-15 21:08:31,796 | INFO     | 
[2026-01-15 22:54:01] 2026-01-15 21:08:31,810 | INFO     | architecture information:
[2026-01-15 22:54:01] 2026-01-15 21:08:31,814 | INFO     | executing command: cat /etc/os-release
[2026-01-15 22:54:01] 2026-01-15 21:08:31,912 | INFO     | cat /etc/os-release:
[2026-01-15 22:54:01] NAME="CentOS Linux"
[2026-01-15 22:54:01] VERSION="7 (Core)"
[2026-01-15 22:54:01] ID="centos"
[2026-01-15 22:54:01] ID_LIKE="rhel fedora"
[2026-01-15 22:54:01] VERSION_ID="7"
[2026-01-15 22:54:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 22:54:01] ANSI_COLOR="0;31"
[2026-01-15 22:54:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 22:54:01] HOME_URL="https://www.centos.org/"
[2026-01-15 22:54:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 22:54:01] 
[2026-01-15 22:54:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 22:54:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 22:54:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 22:54:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 22:54:01] 
[2026-01-15 22:54:01] 2026-01-15 21:08:31,913 | INFO     | ***************************************
[2026-01-15 22:54:01] 2026-01-15 21:08:32,416 | INFO     | executing command: df -mP /scratch/.boinc/slots/4
[2026-01-15 22:54:01] 2026-01-15 21:08:32,543 | INFO     | sufficient remaining disk space (1542499336192 B)
[2026-01-15 22:54:01] 2026-01-15 21:08:32,543 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 22:54:01] 2026-01-15 21:08:32,544 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 22:54:01] 2026-01-15 21:08:32,544 | INFO     | update_server=False
[2026-01-15 22:54:01] 2026-01-15 21:08:32,544 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 22:54:01] 2026-01-15 21:08:32,838 | INFO     | all data control threads have been joined
[2026-01-15 22:54:01] 2026-01-15 21:08:33,023 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 22:54:01] 2026-01-15 21:08:33,466 | INFO     | all payload control threads have been joined
[2026-01-15 22:54:01] 2026-01-15 21:08:33,498 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 22:54:01] 2026-01-15 21:08:33,498 | INFO     | aborting loop
[2026-01-15 22:54:01] 2026-01-15 21:08:33,550 | INFO     | [job] retrieve thread has finished
[2026-01-15 22:54:01] 2026-01-15 21:08:33,635 | INFO     | [job] validate thread has finished
[2026-01-15 22:54:01] 2026-01-15 21:08:33,676 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 22:54:01] 2026-01-15 21:08:33,844 | INFO     | [data] control thread has finished
[2026-01-15 22:54:01] 2026-01-15 21:08:33,913 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 22:54:01] 2026-01-15 21:08:33,952 | INFO     | all job control threads have been joined
[2026-01-15 22:54:01] 2026-01-15 21:08:34,294 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 22:54:01] 2026-01-15 21:08:34,339 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 22:54:01] 2026-01-15 21:08:34,472 | INFO     | [payload] control thread has finished
[2026-01-15 22:54:01] 2026-01-15 21:08:34,504 | INFO     | [job] job monitor thread has finished
[2026-01-15 22:54:01] 2026-01-15 21:08:34,538 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 22:54:01] 2026-01-15 21:08:34,599 | INFO     | [payload] validate_post thread has finished
[2026-01-15 22:54:01] 2026-01-15 21:08:34,673 | INFO     | [data] copytool_in thread has finished
[2026-01-15 22:54:01] 2026-01-15 21:08:34,952 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 22:54:01] 2026-01-15 21:08:34,958 | INFO     | [job] control thread has finished
[2026-01-15 22:54:01] 2026-01-15 21:08:35,030 | INFO     | [data] copytool_out thread has finished
[2026-01-15 22:54:01] 2026-01-15 21:08:35,098 | INFO     | [payload] failed_post thread has finished
[2026-01-15 22:54:01] 2026-01-15 21:08:35,300 | INFO     | [job] queue monitor thread has finished
[2026-01-15 22:54:01] 2026-01-15 21:08:38,963 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 22:54:01] 2026-01-15 21:09:02,932 | INFO     | PID=2234038 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 22:54:01] 2026-01-15 21:09:02,932 | INFO     | .. there are 23 such processes running
[2026-01-15 22:54:01] 2026-01-15 21:09:02,932 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 22:54:01] 2026-01-15 21:09:02,933 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 22:54:01] 2026-01-15 21:09:02,933 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 22:54:01] 2026-01-15 21:09:12,862 | INFO     | [monitor] cgroup control has ended
[2026-01-15 22:54:01] 2026-01-15 21:09:12,898 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139940178409280)>', '<ExcThread(monitor, started 139939832395520)>']
[2026-01-15 22:54:01] 2026-01-15 21:09:12,993 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 22:54:01] 2026-01-15 21:09:12,993 | INFO     | [monitor] control thread has ended
[2026-01-15 22:54:01] 2026-01-15 21:09:17,924 | INFO     | all workflow threads have been joined
[2026-01-15 22:54:01] 2026-01-15 21:09:17,924 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 22:54:01] 2026-01-15 21:09:17,924 | INFO     | traces error code: 0
[2026-01-15 22:54:01] 2026-01-15 21:09:17,924 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 22:54:01] 2026-01-15 21:09:18,190 [wrapper] ==== pilot stdout END ====
[2026-01-15 22:54:01] 2026-01-15 21:09:18,199 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 22:54:01] 2026-01-15 21:09:18,203 [wrapper] pilotpid: 2234038
[2026-01-15 22:54:01] 2026-01-15 21:09:18,213 [wrapper] Pilot exit status: 0
[2026-01-15 22:54:01] 2026-01-15 21:09:18,372 [wrapper] pandaids: 6970457235
[2026-01-15 22:54:01] 2026-01-15 21:09:18,541 [wrapper] cleanup supervisor_pilot 2524021 2234039
[2026-01-15 22:54:01] 2026-01-15 21:09:18,569 [wrapper] Test setup, not cleaning
[2026-01-15 22:54:01] 2026-01-15 21:09:18,615 [wrapper] apfmon messages muted
[2026-01-15 22:54:01] 2026-01-15 21:09:18,655 [wrapper] ==== wrapper stdout END ====
[2026-01-15 22:54:01] 2026-01-15 21:09:18,704 [wrapper] ==== wrapper stderr END ====
[2026-01-15 22:54:01]  *** Error codes and diagnostics ***
[2026-01-15 22:54:01]     "exeErrorCode": 0,
[2026-01-15 22:54:01]     "exeErrorDiag": "",
[2026-01-15 22:54:01]     "pilotErrorCode": 0,
[2026-01-15 22:54:01]     "pilotErrorDiag": "",
[2026-01-15 22:54:01]  *** Listing of results directory ***
[2026-01-15 22:54:01] total 483680
[2026-01-15 22:54:01] -rw-r--r-- 1 boinc boinc    584422 Jan 15 11:40 pilot3.tar.gz
[2026-01-15 22:54:01] -rw-r--r-- 1 boinc boinc      5111 Jan 15 11:44 queuedata.json
[2026-01-15 22:54:01] -rwx------ 1 boinc boinc     36322 Jan 15 11:44 runpilot2-wrapper.sh
[2026-01-15 22:54:01] -rw-r--r-- 1 boinc boinc       100 Jan 15 20:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 22:54:01] -rwxr-xr-x 1 boinc boinc      7986 Jan 15 20:41 run_atlas
[2026-01-15 22:54:01] -rw-r--r-- 1 boinc boinc       105 Jan 15 20:41 job.xml
[2026-01-15 22:54:01] -rw-r--r-- 1 boinc boinc      6675 Jan 15 20:41 init_data.xml
[2026-01-15 22:54:01] -rw-r--r-- 2 boinc boinc 290735953 Jan 15 20:41 EVNT.48188630._000008.pool.root.1
[2026-01-15 22:54:01] -rw-r--r-- 2 boinc boinc     15845 Jan 15 20:41 start_atlas.sh
[2026-01-15 22:54:01] drwxrwx--x 2 boinc boinc      4096 Jan 15 20:41 shared
[2026-01-15 22:54:01] -rw-r--r-- 2 boinc boinc    592411 Jan 15 20:41 input.tar.gz
[2026-01-15 22:54:01] -rw-r--r-- 1 boinc boinc         0 Jan 15 20:41 boinc_lockfile
[2026-01-15 22:54:01] -rw-r--r-- 1 boinc boinc      2617 Jan 15 20:41 pandaJob.out
[2026-01-15 22:54:01] -rw------- 1 boinc boinc   1004059 Jan 15 20:46 agis_schedconf.cvmfs.json
[2026-01-15 22:54:01] -rw------- 1 boinc boinc   1516246 Jan 15 20:46 agis_ddmendpoints.agis.ALL.json
[2026-01-15 22:54:01] drwx------ 5 boinc boinc      4096 Jan 15 20:46 pilot3
[2026-01-15 22:54:01] -rw------- 1 boinc boinc 198364396 Jan 15 22:06 HITS.48188632._000169.pool.root.1
[2026-01-15 22:54:01] -rw-r--r-- 1 boinc boinc       529 Jan 15 22:06 boinc_task_state.xml
[2026-01-15 22:54:01] -rw------- 1 boinc boinc      1028 Jan 15 22:07 memory_monitor_summary.json
[2026-01-15 22:54:01] -rw------- 1 boinc boinc    425645 Jan 15 22:07 log.48188632._000169.job.log.tgz.1
[2026-01-15 22:54:01] -rw------- 1 boinc boinc        95 Jan 15 22:08 pilot_heartbeat.json
[2026-01-15 22:54:01] -rw------- 1 boinc boinc      7777 Jan 15 22:08 heartbeat.json
[2026-01-15 22:54:01] -rw------- 1 boinc boinc      4827 Jan 15 22:09 pilotlog.txt
[2026-01-15 22:54:01] -rw------- 1 boinc boinc    703135 Jan 15 22:09 log.48188632._000169.job.log.1
[2026-01-15 22:54:01] -rw------- 1 boinc boinc       357 Jan 15 22:09 output.list
[2026-01-15 22:54:01] -rw-r--r-- 1 boinc boinc       620 Jan 15 22:09 runtime_log
[2026-01-15 22:54:01] -rw------- 1 boinc boinc   1146880 Jan 15 22:09 result.tar.gz
[2026-01-15 22:54:01] -rw------- 1 boinc boinc       663 Jan 15 22:09 uBcKDmO1Z08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmS6uKDm227yam.diag
[2026-01-15 22:54:01] -rw-r--r-- 1 boinc boinc      8879 Jan 15 22:09 runtime_log.err
[2026-01-15 22:54:01] -rw-r--r-- 1 boinc boinc      8192 Jan 15 22:54 boinc_mmap_file
[2026-01-15 22:54:01] -rw-r--r-- 1 boinc boinc        26 Jan 15 22:54 wrapper_checkpoint.txt
[2026-01-15 22:54:01] -rw-r--r-- 1 boinc boinc     22441 Jan 15 22:54 stderr.txt
[2026-01-15 22:54:01] HITS file was successfully produced:
[2026-01-15 22:54:01] -rw------- 1 boinc boinc 198364396 Jan 15 22:06 shared/HITS.pool.root.1
[2026-01-15 22:54:01]  *** Contents of shared directory: ***
[2026-01-15 22:54:01] total 479364
[2026-01-15 22:54:01] -rw-r--r-- 2 boinc boinc 290735953 Jan 15 20:41 ATLAS.root_0
[2026-01-15 22:54:01] -rw-r--r-- 2 boinc boinc     15845 Jan 15 20:41 start_atlas.sh
[2026-01-15 22:54:01] -rw-r--r-- 2 boinc boinc    592411 Jan 15 20:41 input.tar.gz
[2026-01-15 22:54:01] -rw------- 1 boinc boinc 198364396 Jan 15 22:06 HITS.pool.root.1
[2026-01-15 22:54:01] -rw------- 1 boinc boinc   1146880 Jan 15 22:09 result.tar.gz
22:54:03 (2215894): run_atlas exited; CPU time 35969.304978
22:54:03 (2215894): called boinc_finish(0)

</stderr_txt>
]]>

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