Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
16:37:56 (3368479): wrapper (7.7.26015): starting
16:37:56 (3368479): wrapper: running run_atlas (--nthreads 4)
[2026-01-15 16:37:56] Arguments: --nthreads 4
[2026-01-15 16:37:56] Threads: 4
[2026-01-15 16:37:56] Checking for CVMFS
[2026-01-15 16:37:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 16:37:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 16:37:56] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 16:37:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 16:37:57] 2.11.5.0 1387805 2559 136792 155185 3 228 2958049 4096001 6382 130560 0 17347345 99.992 247108 2171 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-01-15 16:37:57] CVMFS is ok
[2026-01-15 16:37:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 16:37:57] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-15 16:37:57] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-15 16:37:57] Further information can be found at the LHC@home message board.
[2026-01-15 16:37:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 16:37:57] Checking for apptainer binary...
[2026-01-15 16:37:57] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 16:37:57] Running /usr/bin/apptainer --version
[2026-01-15 16:37:57] apptainer version 1.4.5
[2026-01-15 16:37:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 16:37:57] x32-linux3
[2026-01-15 16:37:57] apptainer works
[2026-01-15 16:37:57] Set ATHENA_PROC_NUMBER=4
[2026-01-15 16:37:57] Set ATHENA_CORE_NUMBER=4
[2026-01-15 16:37:57] Starting ATLAS job with PandaID=6970396416
[2026-01-15 16:37:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 17:55:36]  *** The last 200 lines of the pilot log: ***
[2026-01-15 17:55:36]  replicas=None
[2026-01-15 17:55:36]  scope=mc23_13p6TeV
[2026-01-15 17:55:36]  status=None
[2026-01-15 17:55:36]  status_code=0
[2026-01-15 17:55:36]  storage_token=
[2026-01-15 17:55:36]  surl=/var/lib/boinc-client/slots/2/PanDA_Pilot-6970396416/log.48215263._048116.job.log.tgz.1
[2026-01-15 17:55:36]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cd/ae/log.48215263._048116.job.log.tgz.1
[2026-01-15 17:55:36]  workdir=None
[2026-01-15 17:55:36] ]
[2026-01-15 17:55:36] 2026-01-15 22:54:56,857 | INFO     | transferring file log.48215263._048116.job.log.tgz.1 from /var/lib/boinc-client/slots/2/PanDA_Pilot-6970396416/log.48215263._048116.job.log.tgz.1 to /var/lib/boinc
[2026-01-15 17:55:36] 2026-01-15 22:54:56,858 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/2/PanDA_Pilot-6970396416/log.48215263._048116.job.log.tgz.1 /var/lib/boinc-client/slots/2/log.482152
[2026-01-15 17:55:36] 2026-01-15 22:54:56,873 | INFO     | adding to output.list: log.48215263._048116.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cd/ae/log.48215263._048116.job.log.tg
[2026-01-15 17:55:36] 2026-01-15 22:54:56,874 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-15 17:55:36] 2026-01-15 22:54:56,874 | INFO     | summary of transferred files:
[2026-01-15 17:55:36] 2026-01-15 22:54:56,874 | INFO     |  -- lfn=log.48215263._048116.job.log.tgz.1, status_code=0, status=transferred
[2026-01-15 17:55:36] 2026-01-15 22:54:56,874 | INFO     | stage-out finished correctly
[2026-01-15 17:55:36] 2026-01-15 22:54:56,966 | WARNING  | process 3378989 can no longer be monitored (due to stat problems) - aborting
[2026-01-15 17:55:36] 2026-01-15 22:54:56,967 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6970396416/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 17:55:36] 2026-01-15 22:54:57,093 | INFO     | number of running child processes to parent process 3378989: 1
[2026-01-15 17:55:36] 2026-01-15 22:54:57,093 | INFO     | maximum number of monitored processes: 6
[2026-01-15 17:55:36] 2026-01-15 22:54:57,786 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-15 17:55:36] 2026-01-15 22:54:57,846 | INFO     | job 6970396416 has state=finished
[2026-01-15 17:55:36] 2026-01-15 22:54:57,847 | INFO     | preparing for final server update for job 6970396416 in state='finished'
[2026-01-15 17:55:36] 2026-01-15 22:54:57,847 | INFO     | this job has now completed (state=finished)
[2026-01-15 17:55:36] 2026-01-15 22:54:57,847 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-15 17:55:36] 2026-01-15 22:54:57,847 | INFO     | log transfer has been attempted: DONE
[2026-01-15 17:55:36] 2026-01-15 22:54:57,847 | INFO     | job 6970396416 has finished - writing final server update
[2026-01-15 17:55:36] 2026-01-15 22:54:57,847 | INFO     | total number of processed events: 400 (read)
[2026-01-15 17:55:36] 2026-01-15 22:54:57,848 | INFO     | executing command: lscpu
[2026-01-15 17:55:36] 2026-01-15 22:54:57,891 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-15 17:55:36] 2026-01-15 22:54:58,830 | INFO     | time since job start (4613s) is within the limit (349056.0s)
[2026-01-15 17:55:36] 2026-01-15 22:54:59,596 | INFO     | monitor loop #347: job 0:6970396416 is in state 'finished'
[2026-01-15 17:55:36] 2026-01-15 22:54:59,597 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 17:55:36] 2026-01-15 22:55:00,836 | INFO     | time since job start (4615s) is within the limit (349056.0s)
[2026-01-15 17:55:36] 2026-01-15 22:55:02,103 | INFO     | monitor loop #348: job 0:6970396416 is in state 'finished'
[2026-01-15 17:55:36] 2026-01-15 22:55:02,103 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 17:55:36] 2026-01-15 22:55:02,841 | INFO     | time since job start (4617s) is within the limit (349056.0s)
[2026-01-15 17:55:36] 2026-01-15 22:55:02,841 | INFO     | 4619s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-15 17:55:36] 2026-01-15 22:55:03,511 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-15 17:55:36] 2026-01-15 22:55:03,515 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3668.6371875
[2026-01-15 17:55:36] 2026-01-15 22:55:03,520 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6970396416/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 17:55:36] 2026-01-15 22:55:03,521 | INFO     | extracted standard info from prmon json
[2026-01-15 17:55:36] 2026-01-15 22:55:03,521 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 17:55:36] 2026-01-15 22:55:03,521 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 17:55:36] 2026-01-15 22:55:03,521 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 17:55:36] 2026-01-15 22:55:03,521 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 17:55:36] 2026-01-15 22:55:03,522 | INFO     | fitting pss+swap vs Time
[2026-01-15 17:55:36] 2026-01-15 22:55:03,522 | INFO     | sum of square deviations: 101843770.0
[2026-01-15 17:55:36] 2026-01-15 22:55:03,522 | INFO     | sum of deviations: -4222341859.0000014
[2026-01-15 17:55:36] 2026-01-15 22:55:03,522 | INFO     | mean x: 1768515487.0
[2026-01-15 17:55:36] 2026-01-15 22:55:03,523 | INFO     | mean y: 2394117.2608695654
[2026-01-15 17:55:36] 2026-01-15 22:55:03,523 | INFO     | intersect: 73323295032.94646
[2026-01-15 17:55:36] 2026-01-15 22:55:03,523 | INFO     | chi2: 0.007418523919629726
[2026-01-15 17:55:36] 2026-01-15 22:55:03,523 | INFO     | current memory leak: -41.46 B/s (using 69 data points, chi2=0.01)
[2026-01-15 17:55:36] 2026-01-15 22:55:03,523 | INFO     | could have reported an average CPU frequency of 3851 MHz (6 samples)
[2026-01-15 17:55:36] 2026-01-15 22:55:03,523 | INFO     | ..............................
[2026-01-15 17:55:36] 2026-01-15 22:55:03,523 | INFO     | . Timing measurements:
[2026-01-15 17:55:36] 2026-01-15 22:55:03,523 | INFO     | . get job = 0 s
[2026-01-15 17:55:36] 2026-01-15 22:55:03,523 | INFO     | . initial setup = 2 s
[2026-01-15 17:55:36] 2026-01-15 22:55:03,523 | INFO     | . payload setup = 3 s
[2026-01-15 17:55:36] 2026-01-15 22:55:03,523 | INFO     | . stage-in = 0 s
[2026-01-15 17:55:36] 2026-01-15 22:55:03,523 | INFO     | . payload execution = 4588 s
[2026-01-15 17:55:36] 2026-01-15 22:55:03,523 | INFO     | . stage-out = 0 s
[2026-01-15 17:55:36] 2026-01-15 22:55:03,524 | INFO     | . log creation = 0 s
[2026-01-15 17:55:36] 2026-01-15 22:55:03,524 | INFO     | ..............................
[2026-01-15 17:55:36] 2026-01-15 22:55:03,940 | INFO     | 
[2026-01-15 17:55:36] 2026-01-15 22:55:03,940 | INFO     | job summary report
[2026-01-15 17:55:36] 2026-01-15 22:55:03,940 | INFO     | --------------------------------------------------
[2026-01-15 17:55:36] 2026-01-15 22:55:03,940 | INFO     | PanDA job id: 6970396416
[2026-01-15 17:55:36] 2026-01-15 22:55:03,940 | INFO     | task id: 48215263
[2026-01-15 17:55:36] 2026-01-15 22:55:03,940 | INFO     | errors: (none)
[2026-01-15 17:55:36] 2026-01-15 22:55:03,940 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-15 17:55:36] 2026-01-15 22:55:03,940 | INFO     | pilot state: finished 
[2026-01-15 17:55:36] 2026-01-15 22:55:03,941 | INFO     | transexitcode: 0
[2026-01-15 17:55:36] 2026-01-15 22:55:03,941 | INFO     | exeerrorcode: 0
[2026-01-15 17:55:36] 2026-01-15 22:55:03,941 | INFO     | exeerrordiag: 
[2026-01-15 17:55:36] 2026-01-15 22:55:03,941 | INFO     | exitcode: 0
[2026-01-15 17:55:36] 2026-01-15 22:55:03,941 | INFO     | exitmsg: OK
[2026-01-15 17:55:36] 2026-01-15 22:55:03,941 | INFO     | cpuconsumptiontime: 17450 s
[2026-01-15 17:55:36] 2026-01-15 22:55:03,941 | INFO     | nevents: 400
[2026-01-15 17:55:36] 2026-01-15 22:55:03,941 | INFO     | neventsw: 0
[2026-01-15 17:55:36] 2026-01-15 22:55:03,941 | INFO     | pid: 3378989
[2026-01-15 17:55:36] 2026-01-15 22:55:03,941 | INFO     | pgrp: 3378989
[2026-01-15 17:55:36] 2026-01-15 22:55:03,941 | INFO     | corecount: 4
[2026-01-15 17:55:36] 2026-01-15 22:55:03,941 | INFO     | event service: False
[2026-01-15 17:55:36] 2026-01-15 22:55:03,941 | INFO     | sizes: {0: 2283731, 1: 2283986, 4: 2284248, 11: 2284276, 4596: 2310542, 4598: 2319554, 4599: 2319738, 4604: 2319932}
[2026-01-15 17:55:36] 2026-01-15 22:55:03,941 | INFO     | --------------------------------------------------
[2026-01-15 17:55:36] 2026-01-15 22:55:03,941 | INFO     | 
[2026-01-15 17:55:36] 2026-01-15 22:55:03,941 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2026-01-15 17:55:36] 2026-01-15 22:55:03,957 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 17:55:36] 2026-01-15 22:55:03,957 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 17:55:36] 2026-01-15 22:55:03,958 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 17:55:36] 2026-01-15 22:55:03,958 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 17:55:36] 2026-01-15 22:55:03,958 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 17:55:36] 2026-01-15 22:55:03,958 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 17:55:36] 2026-01-15 22:55:03,958 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 17:55:36] 2026-01-15 22:55:03,958 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 17:55:36] 2026-01-15 22:55:03,958 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 17:55:36] 2026-01-15 22:55:03,958 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 17:55:36] 2026-01-15 22:55:03,958 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 17:55:36] 2026-01-15 22:55:03,958 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 17:55:36] 2026-01-15 22:55:03,958 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 17:55:36] 2026-01-15 22:55:03,958 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 17:55:36] 2026-01-15 22:55:03,958 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 17:55:36] 2026-01-15 22:55:03,958 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 17:55:36] 2026-01-15 22:55:03,959 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 17:55:36] 2026-01-15 22:55:03,959 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 17:55:36] 2026-01-15 22:55:03,959 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 17:55:36] 2026-01-15 22:55:03,959 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 17:55:36] 2026-01-15 22:55:03,959 | INFO     | job 6970396416 has completed (purged errors)
[2026-01-15 17:55:36] 2026-01-15 22:55:03,959 | INFO     | overall cleanup function is called
[2026-01-15 17:55:36] 2026-01-15 22:55:04,964 | INFO     | --- collectZombieJob: --- 10, [3378989]
[2026-01-15 17:55:36] 2026-01-15 22:55:04,965 | INFO     | zombie collector waiting for pid 3378989
[2026-01-15 17:55:36] 2026-01-15 22:55:04,965 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 17:55:36] 2026-01-15 22:55:04,965 | INFO     | collected zombie processes
[2026-01-15 17:55:36] 2026-01-15 22:55:04,965 | INFO     | will attempt to kill all subprocesses of pid=3378989
[2026-01-15 17:55:36] 2026-01-15 22:55:05,092 | INFO     | process IDs to be killed: [3378989] (in reverse order)
[2026-01-15 17:55:36] 2026-01-15 22:55:05,141 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 17:55:36] 2026-01-15 22:55:05,142 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 17:55:36] 2026-01-15 22:55:05,146 | INFO     | did not find any defunct processes belonging to 3378989
[2026-01-15 17:55:36] 2026-01-15 22:55:05,150 | INFO     | did not find any defunct processes belonging to 3378989
[2026-01-15 17:55:36] 2026-01-15 22:55:05,150 | INFO     | ready for new job
[2026-01-15 17:55:36] 2026-01-15 22:55:05,150 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 17:55:36] 2026-01-15 22:55:05,151 | INFO     | ***************************************
[2026-01-15 17:55:36] 2026-01-15 22:55:05,151 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 17:55:36] 2026-01-15 22:55:05,151 | INFO     | ***************************************
[2026-01-15 17:55:36] 2026-01-15 22:55:05,151 | INFO     | 
[2026-01-15 17:55:36] 2026-01-15 22:55:05,174 | INFO     | architecture information:
[2026-01-15 17:55:36] 2026-01-15 22:55:05,174 | INFO     | executing command: cat /etc/os-release
[2026-01-15 17:55:36] 2026-01-15 22:55:05,186 | INFO     | cat /etc/os-release:
[2026-01-15 17:55:36] NAME="CentOS Linux"
[2026-01-15 17:55:36] VERSION="7 (Core)"
[2026-01-15 17:55:36] ID="centos"
[2026-01-15 17:55:36] ID_LIKE="rhel fedora"
[2026-01-15 17:55:36] VERSION_ID="7"
[2026-01-15 17:55:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 17:55:36] ANSI_COLOR="0;31"
[2026-01-15 17:55:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 17:55:36] HOME_URL="https://www.centos.org/"
[2026-01-15 17:55:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 17:55:36] 
[2026-01-15 17:55:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 17:55:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 17:55:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 17:55:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 17:55:36] 
[2026-01-15 17:55:36] 2026-01-15 22:55:05,186 | INFO     | ***************************************
[2026-01-15 17:55:36] 2026-01-15 22:55:05,689 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2026-01-15 17:55:36] 2026-01-15 22:55:05,702 | INFO     | sufficient remaining disk space (394558177280 B)
[2026-01-15 17:55:36] 2026-01-15 22:55:05,703 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 17:55:36] 2026-01-15 22:55:05,703 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 17:55:36] 2026-01-15 22:55:05,703 | INFO     | update_server=False
[2026-01-15 17:55:36] 2026-01-15 22:55:05,703 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 17:55:36] 2026-01-15 22:55:05,704 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 17:55:36] 2026-01-15 22:55:05,704 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 17:55:36] 2026-01-15 22:55:05,704 | INFO     | aborting loop
[2026-01-15 17:55:36] 2026-01-15 22:55:06,082 | INFO     | all data control threads have been joined
[2026-01-15 17:55:36] 2026-01-15 22:55:06,550 | INFO     | all payload control threads have been joined
[2026-01-15 17:55:36] 2026-01-15 22:55:06,660 | INFO     | all job control threads have been joined
[2026-01-15 17:55:36] 2026-01-15 22:55:06,708 | INFO     | [job] retrieve thread has finished
[2026-01-15 17:55:36] 2026-01-15 22:55:06,709 | INFO     | [job] job monitor thread has finished
[2026-01-15 17:55:36] 2026-01-15 22:55:07,088 | INFO     | [data] control thread has finished
[2026-01-15 17:55:36] 2026-01-15 22:55:07,152 | INFO     | [data] copytool_in thread has finished
[2026-01-15 17:55:36] 2026-01-15 22:55:07,165 | INFO     | [payload] failed_post thread has finished
[2026-01-15 17:55:36] 2026-01-15 22:55:07,552 | INFO     | [payload] control thread has finished
[2026-01-15 17:55:36] 2026-01-15 22:55:07,664 | INFO     | [job] control thread has finished
[2026-01-15 17:55:36] 2026-01-15 22:55:07,704 | INFO     | [job] validate thread has finished
[2026-01-15 17:55:36] 2026-01-15 22:55:07,708 | INFO     | [data] copytool_out thread has finished
[2026-01-15 17:55:36] 2026-01-15 22:55:07,748 | INFO     | [payload] validate_post thread has finished
[2026-01-15 17:55:36] 2026-01-15 22:55:07,900 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 17:55:36] 2026-01-15 22:55:07,961 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 17:55:36] 2026-01-15 22:55:08,148 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 17:55:36] 2026-01-15 22:55:08,152 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 17:55:36] 2026-01-15 22:55:08,356 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 17:55:36] 2026-01-15 22:55:08,592 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 17:55:36] 2026-01-15 22:55:09,598 | INFO     | [job] queue monitor thread has finished
[2026-01-15 17:55:36] 2026-01-15 22:55:12,362 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 17:55:36] 2026-01-15 22:55:12,624 | INFO     | [monitor] cgroup control has ended
[2026-01-15 17:55:36] 2026-01-15 22:55:14,204 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140048898037568)>', '<ExcThread(monitor, started 140048322250496)>']
[2026-01-15 17:55:36] 2026-01-15 22:55:19,228 | INFO     | all workflow threads have been joined
[2026-01-15 17:55:36] 2026-01-15 22:55:19,229 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 17:55:36] 2026-01-15 22:55:19,229 | INFO     | traces error code: 0
[2026-01-15 17:55:36] 2026-01-15 22:55:19,229 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 17:55:36] 2026-01-15 22:55:36,051 | INFO     | PID=3372328 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 17:55:36] 2026-01-15 22:55:36,051 | INFO     | .. there are 7 such processes running
[2026-01-15 17:55:36] 2026-01-15 22:55:36,051 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 17:55:36] 2026-01-15 22:55:36,051 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 17:55:36] 2026-01-15 22:55:36,052 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 17:55:36] 2026-01-15 22:55:36,052 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 17:55:36] 2026-01-15 22:55:36,052 | INFO     | [monitor] control thread has ended
[2026-01-15 17:55:36] 2026-01-15 22:55:36,133 [wrapper] ==== pilot stdout END ====
[2026-01-15 17:55:36] 2026-01-15 22:55:36,135 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 17:55:36] 2026-01-15 22:55:36,137 [wrapper] pilotpid: 3372328
[2026-01-15 17:55:36] 2026-01-15 22:55:36,139 [wrapper] Pilot exit status: 0
[2026-01-15 17:55:36] 2026-01-15 22:55:36,153 [wrapper] pandaids: 6970396416
[2026-01-15 17:55:36] 2026-01-15 22:55:36,185 [wrapper] cleanup supervisor_pilot 3522786 3372329
[2026-01-15 17:55:36] 2026-01-15 22:55:36,188 [wrapper] Test setup, not cleaning
[2026-01-15 17:55:36] 2026-01-15 22:55:36,190 [wrapper] apfmon messages muted
[2026-01-15 17:55:36] 2026-01-15 22:55:36,192 [wrapper] ==== wrapper stdout END ====
[2026-01-15 17:55:36] 2026-01-15 22:55:36,194 [wrapper] ==== wrapper stderr END ====
[2026-01-15 17:55:36]  *** Error codes and diagnostics ***
[2026-01-15 17:55:36]     "exeErrorCode": 0,
[2026-01-15 17:55:36]     "exeErrorDiag": "",
[2026-01-15 17:55:36]     "pilotErrorCode": 0,
[2026-01-15 17:55:36]     "pilotErrorDiag": "",
[2026-01-15 17:55:36]  *** Listing of results directory ***
[2026-01-15 17:55:36] total 731744
[2026-01-15 17:55:36] -rw-r--r-- 1 boinc boinc    579449 Jan 15 01:52 pilot3.tar.gz
[2026-01-15 17:55:36] -rwx------ 1 boinc boinc     36322 Jan 15 01:53 runpilot2-wrapper.sh
[2026-01-15 17:55:36] -rw-r--r-- 1 boinc boinc      5112 Jan 15 01:54 queuedata.json
[2026-01-15 17:55:36] -rw-r--r-- 1 boinc boinc       100 Jan 15 16:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 17:55:36] -rwxr-xr-x 1 boinc boinc      7986 Jan 15 16:37 run_atlas
[2026-01-15 17:55:36] -rw-r--r-- 1 boinc boinc       105 Jan 15 16:37 job.xml
[2026-01-15 17:55:36] -rw-r--r-- 2 boinc boinc     15847 Jan 15 16:37 start_atlas.sh
[2026-01-15 17:55:36] drwxrwx--x 2 boinc boinc      4096 Jan 15 16:37 shared
[2026-01-15 17:55:36] -rw-r--r-- 2 boinc boinc    592400 Jan 15 16:37 input.tar.gz
[2026-01-15 17:55:36] -rw-r--r-- 1 boinc boinc      9156 Jan 15 16:37 init_data.xml
[2026-01-15 17:55:36] -rw-r--r-- 2 boinc boinc 592660699 Jan 15 16:37 EVNT.32794306._001868.pool.root.1
[2026-01-15 17:55:36] -rw-r--r-- 1 boinc boinc         0 Jan 15 16:37 boinc_setup_complete
[2026-01-15 17:55:36] -rw-r--r-- 1 boinc boinc         0 Jan 15 16:37 boinc_lockfile
[2026-01-15 17:55:36] -rw-r--r-- 1 boinc boinc      2508 Jan 15 16:37 pandaJob.out
[2026-01-15 17:55:36] -rw------- 1 boinc boinc   1004083 Jan 15 16:38 agis_schedconf.cvmfs.json
[2026-01-15 17:55:36] -rw------- 1 boinc boinc   1516246 Jan 15 16:38 agis_ddmendpoints.agis.ALL.json
[2026-01-15 17:55:36] drwx------ 5 boinc boinc      4096 Jan 15 16:38 pilot3
[2026-01-15 17:55:36] -rw------- 1 boinc boinc 150824506 Jan 15 17:54 HITS.48215263._048116.pool.root.1
[2026-01-15 17:55:36] -rw-r--r-- 1 boinc boinc       530 Jan 15 17:54 boinc_task_state.xml
[2026-01-15 17:55:36] -rw------- 1 boinc boinc      1019 Jan 15 17:54 memory_monitor_summary.json
[2026-01-15 17:55:36] -rw------- 1 boinc boinc    253127 Jan 15 17:54 log.48215263._048116.job.log.tgz.1
[2026-01-15 17:55:36] -rw------- 1 boinc boinc        95 Jan 15 17:54 pilot_heartbeat.json
[2026-01-15 17:55:36] -rw------- 1 boinc boinc      7753 Jan 15 17:55 heartbeat.json
[2026-01-15 17:55:36] -rw-r--r-- 1 boinc boinc      8192 Jan 15 17:55 boinc_mmap_file
[2026-01-15 17:55:36] -rw-r--r-- 1 boinc boinc        27 Jan 15 17:55 wrapper_checkpoint.txt
[2026-01-15 17:55:36] -rw------- 1 boinc boinc       822 Jan 15 17:55 pilotlog.txt
[2026-01-15 17:55:36] -rw------- 1 boinc boinc    694650 Jan 15 17:55 log.48215263._048116.job.log.1
[2026-01-15 17:55:36] -rw------- 1 boinc boinc       357 Jan 15 17:55 output.list
[2026-01-15 17:55:36] -rw-r--r-- 1 boinc boinc       620 Jan 15 17:55 runtime_log
[2026-01-15 17:55:36] -rw------- 1 boinc boinc    962560 Jan 15 17:55 result.tar.gz
[2026-01-15 17:55:36] -rw------- 1 boinc boinc       643 Jan 15 17:55 3qhLDmvPW08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmjCoKDm3LEUXm.diag
[2026-01-15 17:55:36] -rw-r--r-- 1 boinc boinc      8892 Jan 15 17:55 runtime_log.err
[2026-01-15 17:55:36] -rw-r--r-- 1 boinc boinc     22048 Jan 15 17:55 stderr.txt
[2026-01-15 17:55:36] HITS file was successfully produced:
[2026-01-15 17:55:36] -rw------- 1 boinc boinc 150824506 Jan 15 17:54 shared/HITS.pool.root.1
[2026-01-15 17:55:36]  *** Contents of shared directory: ***
[2026-01-15 17:55:36] total 727608
[2026-01-15 17:55:36] -rw-r--r-- 2 boinc boinc     15847 Jan 15 16:37 start_atlas.sh
[2026-01-15 17:55:36] -rw-r--r-- 2 boinc boinc    592400 Jan 15 16:37 input.tar.gz
[2026-01-15 17:55:36] -rw-r--r-- 2 boinc boinc 592660699 Jan 15 16:37 ATLAS.root_0
[2026-01-15 17:55:36] -rw------- 1 boinc boinc 150824506 Jan 15 17:54 HITS.pool.root.1
[2026-01-15 17:55:36] -rw------- 1 boinc boinc    962560 Jan 15 17:55 result.tar.gz
17:55:37 (3368479): run_atlas exited; CPU time 17496.174301
17:55:37 (3368479): called boinc_finish(0)

</stderr_txt>
]]>

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