Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:31:05 (2593952): wrapper (7.7.26015): starting
18:31:05 (2593952): wrapper: running run_atlas (--nthreads 4)
[2026-01-15 18:31:05] Arguments: --nthreads 4
[2026-01-15 18:31:05] Threads: 4
[2026-01-15 18:31:05] Checking for CVMFS
[2026-01-15 18:31:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 18:31:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 18:31:05] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 18:31:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 18:31:05] 2.9.2.0 1488978 2349 96352 155180 0 56 18883785 36864001 0 130560 0 2946816 99.993 99611 5541 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-15 18:31:05] CVMFS is ok
[2026-01-15 18:31:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 18:31:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 18:31:05] Further information can be found at the LHC@home message board.
[2026-01-15 18:31:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 18:31:05] Checking for apptainer binary...
[2026-01-15 18:31:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 18:31:05] Running /usr/bin/apptainer --version
[2026-01-15 18:31:05] apptainer version 1.4.1-1.1
[2026-01-15 18:31:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 18:31:05] thA315a
[2026-01-15 18:31:05] apptainer works
[2026-01-15 18:31:05] Set ATHENA_PROC_NUMBER=4
[2026-01-15 18:31:05] Set ATHENA_CORE_NUMBER=4
[2026-01-15 18:31:05] Starting ATLAS job with PandaID=6970395876
[2026-01-15 18:31:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 19:18:22]  *** The last 200 lines of the pilot log: ***
[2026-01-15 19:18:22] 2026-01-15 18:17:43,527 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 19:18:22] 2026-01-15 18:17:43,527 | INFO     | job 6970395876 has completed (purged errors)
[2026-01-15 19:18:22] 2026-01-15 18:17:43,527 | INFO     | overall cleanup function is called
[2026-01-15 19:18:22] 2026-01-15 18:17:43,774 | WARNING  | process 2604324 can no longer be monitored (due to stat problems) - aborting
[2026-01-15 19:18:22] 2026-01-15 18:17:43,807 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 19:18:22] 2026-01-15 18:17:43,847 | INFO     | number of running child processes to parent process 2604324: 1
[2026-01-15 19:18:22] 2026-01-15 18:17:43,847 | INFO     | maximum number of monitored processes: 6
[2026-01-15 19:18:22] 2026-01-15 18:17:43,847 | INFO     | aborting job monitoring since job object (job id=6970395876) has expired
[2026-01-15 19:18:22] 2026-01-15 18:17:44,534 | INFO     | --- collectZombieJob: --- 10, [2604324]
[2026-01-15 19:18:22] 2026-01-15 18:17:44,534 | INFO     | zombie collector waiting for pid 2604324
[2026-01-15 19:18:22] 2026-01-15 18:17:44,534 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 19:18:22] 2026-01-15 18:17:44,534 | INFO     | collected zombie processes
[2026-01-15 19:18:22] 2026-01-15 18:17:44,535 | INFO     | will attempt to kill all subprocesses of pid=2604324
[2026-01-15 19:18:22] 2026-01-15 18:17:44,578 | INFO     | process IDs to be killed: [2604324] (in reverse order)
[2026-01-15 19:18:22] 2026-01-15 18:17:44,610 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 19:18:22] 2026-01-15 18:17:44,610 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 19:18:22] 2026-01-15 18:17:44,612 | INFO     | did not find any defunct processes belonging to 2604324
[2026-01-15 19:18:22] 2026-01-15 18:17:44,613 | INFO     | did not find any defunct processes belonging to 2604324
[2026-01-15 19:18:22] 2026-01-15 18:17:44,613 | INFO     | ready for new job
[2026-01-15 19:18:22] 2026-01-15 18:17:44,613 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 19:18:22] 2026-01-15 18:17:44,614 | INFO     | ***************************************
[2026-01-15 19:18:22] 2026-01-15 18:17:44,614 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 19:18:22] 2026-01-15 18:17:44,614 | INFO     | ***************************************
[2026-01-15 19:18:22] 2026-01-15 18:17:44,614 | INFO     | 
[2026-01-15 19:18:22] 2026-01-15 18:17:44,614 | INFO     | architecture information:
[2026-01-15 19:18:22] 2026-01-15 18:17:44,614 | INFO     | executing command: cat /etc/os-release
[2026-01-15 19:18:22] 2026-01-15 18:17:44,627 | INFO     | cat /etc/os-release:
[2026-01-15 19:18:22] NAME="CentOS Linux"
[2026-01-15 19:18:22] VERSION="7 (Core)"
[2026-01-15 19:18:22] ID="centos"
[2026-01-15 19:18:22] ID_LIKE="rhel fedora"
[2026-01-15 19:18:22] VERSION_ID="7"
[2026-01-15 19:18:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 19:18:22] ANSI_COLOR="0;31"
[2026-01-15 19:18:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 19:18:22] HOME_URL="https://www.centos.org/"
[2026-01-15 19:18:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 19:18:22] 
[2026-01-15 19:18:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 19:18:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 19:18:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 19:18:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 19:18:22] 
[2026-01-15 19:18:22] 2026-01-15 18:17:44,628 | INFO     | ***************************************
[2026-01-15 19:18:22] 2026-01-15 18:17:45,131 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-15 19:18:22] 2026-01-15 18:17:45,148 | INFO     | sufficient remaining disk space (241928503296 B)
[2026-01-15 19:18:22] 2026-01-15 18:17:45,148 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 19:18:22] 2026-01-15 18:17:45,148 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 19:18:22] 2026-01-15 18:17:45,148 | INFO     | update_server=False
[2026-01-15 19:18:22] 2026-01-15 18:17:45,148 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 19:18:22] 2026-01-15 18:17:45,148 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 19:18:22] 2026-01-15 18:17:45,148 | INFO     | aborting loop
[2026-01-15 19:18:22] 2026-01-15 18:17:45,148 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 19:18:22] 2026-01-15 18:17:45,525 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 19:18:22] 2026-01-15 18:17:45,549 | INFO     | all job control threads have been joined
[2026-01-15 19:18:22] 2026-01-15 18:17:45,998 | INFO     | all data control threads have been joined
[2026-01-15 19:18:22] 2026-01-15 18:17:46,154 | INFO     | [job] job monitor thread has finished
[2026-01-15 19:18:22] 2026-01-15 18:17:46,154 | INFO     | [job] retrieve thread has finished
[2026-01-15 19:18:22] 2026-01-15 18:17:46,154 | INFO     | [job] queue monitor thread has finished
[2026-01-15 19:18:22] 2026-01-15 18:17:46,172 | INFO     | [payload] validate_post thread has finished
[2026-01-15 19:18:22] 2026-01-15 18:17:46,175 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 19:18:22] 2026-01-15 18:17:46,228 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 19:18:22] 2026-01-15 18:17:46,232 | INFO     | all payload control threads have been joined
[2026-01-15 19:18:22] 2026-01-15 18:17:46,233 | INFO     | [payload] failed_post thread has finished
[2026-01-15 19:18:22] 2026-01-15 18:17:46,492 | INFO     | [data] copytool_in thread has finished
[2026-01-15 19:18:22] 2026-01-15 18:17:46,555 | INFO     | [job] control thread has finished
[2026-01-15 19:18:22] 2026-01-15 18:17:47,003 | INFO     | [data] control thread has finished
[2026-01-15 19:18:22] 2026-01-15 18:17:47,131 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 19:18:22] 2026-01-15 18:17:47,239 | INFO     | [payload] control thread has finished
[2026-01-15 19:18:22] 2026-01-15 18:17:47,511 | INFO     | [job] validate thread has finished
[2026-01-15 19:18:22] 2026-01-15 18:17:47,531 | INFO     | [data] copytool_out thread has finished
[2026-01-15 19:18:22] 2026-01-15 18:17:48,392 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 19:18:22] 2026-01-15 18:17:52,399 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 19:18:22] 2026-01-15 18:17:56,195 | INFO     | job.realtimelogging is not enabled
[2026-01-15 19:18:22] 2026-01-15 18:17:57,201 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 19:18:22] 2026-01-15 18:18:15,148 | INFO     | PID=2597749 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 19:18:22] 2026-01-15 18:18:15,148 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 19:18:22] 2026-01-15 18:18:15,148 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 19:18:22] 2026-01-15 18:18:15,148 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 19:18:22] 2026-01-15 18:18:16,223 | INFO     | [monitor] cgroup control has ended
[2026-01-15 19:18:22] 2026-01-15 18:18:16,901 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139819089434432)>', '<ExcThread(monitor, started 139818113668864)>']
[2026-01-15 19:18:22] 2026-01-15 18:18:17,159 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 19:18:22] 2026-01-15 18:18:17,160 | INFO     | [monitor] control thread has ended
[2026-01-15 19:18:22] 2026-01-15 18:18:21,926 | INFO     | all workflow threads have been joined
[2026-01-15 19:18:22] 2026-01-15 18:18:21,926 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 19:18:22] 2026-01-15 18:18:21,926 | INFO     | traces error code: 0
[2026-01-15 19:18:22] 2026-01-15 18:18:21,926 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 19:18:22] 2026-01-15 18:18:21,995 [wrapper] ==== pilot stdout END ====
[2026-01-15 19:18:22] 2026-01-15 18:18:21,999 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 19:18:22] 2026-01-15 18:18:22,003 [wrapper] pilotpid: 2597749
[2026-01-15 19:18:22] 2026-01-15 18:18:22,006 [wrapper] Pilot exit status: 0
[2026-01-15 19:18:22] 2026-01-15 18:18:22,017 [wrapper] pandaids: 6970395876
[2026-01-15 19:18:22] 2026-01-15 18:18:22,038 [wrapper] cleanup supervisor_pilot 2613786 2597750
[2026-01-15 19:18:22] 2026-01-15 18:18:22,042 [wrapper] Test setup, not cleaning
[2026-01-15 19:18:22] 2026-01-15 18:18:22,045 [wrapper] apfmon messages muted
[2026-01-15 19:18:22] 2026-01-15 18:18:22,049 [wrapper] ==== wrapper stdout END ====
[2026-01-15 19:18:22] 2026-01-15 18:18:22,053 [wrapper] ==== wrapper stderr END ====
[2026-01-15 19:18:22]  *** Error codes and diagnostics ***
[2026-01-15 19:18:22]     "exeErrorCode": 0,
[2026-01-15 19:18:22]     "exeErrorDiag": "",
[2026-01-15 19:18:22]     "pilotErrorCode": 0,
[2026-01-15 19:18:22]     "pilotErrorDiag": "",
[2026-01-15 19:18:22]  *** Listing of results directory ***
[2026-01-15 19:18:22] total 739632
[2026-01-15 19:18:22] -rw-r--r-- 1 boinc boinc    579449 Jan 15 07:52 pilot3.tar.gz
[2026-01-15 19:18:22] -rw-r--r-- 1 boinc boinc      5112 Jan 15 07:55 queuedata.json
[2026-01-15 19:18:22] -rwx------ 1 boinc boinc     36322 Jan 15 07:55 runpilot2-wrapper.sh
[2026-01-15 19:18:22] -rw-r--r-- 1 boinc boinc       100 Jan 15 18:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 19:18:22] -rwxr-xr-x 1 boinc boinc      7986 Jan 15 18:31 run_atlas
[2026-01-15 19:18:22] -rw-r--r-- 1 boinc boinc       105 Jan 15 18:31 job.xml
[2026-01-15 19:18:22] -rw-r--r-- 2 boinc boinc 600063254 Jan 15 18:31 EVNT.32794306._001857.pool.root.1
[2026-01-15 19:18:22] drwxrwx--x 2 boinc boinc      4096 Jan 15 18:31 shared
[2026-01-15 19:18:22] -rw-r--r-- 2 boinc boinc    592402 Jan 15 18:31 input.tar.gz
[2026-01-15 19:18:22] -rw-r--r-- 2 boinc boinc     15847 Jan 15 18:31 start_atlas.sh
[2026-01-15 19:18:22] -rw-r--r-- 1 boinc boinc         0 Jan 15 18:31 boinc_setup_complete
[2026-01-15 19:18:22] -rw-r--r-- 1 boinc boinc      6371 Jan 15 18:31 init_data.xml
[2026-01-15 19:18:22] -rw-r--r-- 1 boinc boinc         0 Jan 15 18:31 boinc_lockfile
[2026-01-15 19:18:22] -rw-r--r-- 1 boinc boinc      2509 Jan 15 18:31 pandaJob.out
[2026-01-15 19:18:22] -rw------- 1 boinc boinc   1004075 Jan 15 18:31 agis_schedconf.cvmfs.json
[2026-01-15 19:18:22] -rw------- 1 boinc boinc   1516246 Jan 15 18:31 agis_ddmendpoints.agis.ALL.json
[2026-01-15 19:18:22] drwx------ 5 boinc boinc      4096 Jan 15 18:31 pilot3
[2026-01-15 19:18:22] -rw------- 1 boinc boinc 152054647 Jan 15 19:17 HITS.48215263._047847.pool.root.1
[2026-01-15 19:18:22] -rw------- 1 boinc boinc        95 Jan 15 19:17 pilot_heartbeat.json
[2026-01-15 19:18:22] -rw-r--r-- 1 boinc boinc       530 Jan 15 19:17 boinc_task_state.xml
[2026-01-15 19:18:22] -rw------- 1 boinc boinc      1019 Jan 15 19:17 memory_monitor_summary.json
[2026-01-15 19:18:22] -rw------- 1 boinc boinc    239516 Jan 15 19:17 log.48215263._047847.job.log.tgz.1
[2026-01-15 19:18:22] -rw------- 1 boinc boinc      7754 Jan 15 19:17 heartbeat.json
[2026-01-15 19:18:22] -rw-r--r-- 1 boinc boinc      8192 Jan 15 19:18 boinc_mmap_file
[2026-01-15 19:18:22] -rw-r--r-- 1 boinc boinc        27 Jan 15 19:18 wrapper_checkpoint.txt
[2026-01-15 19:18:22] -rw------- 1 boinc boinc      4824 Jan 15 19:18 pilotlog.txt
[2026-01-15 19:18:22] -rw------- 1 boinc boinc    433654 Jan 15 19:18 log.48215263._047847.job.log.1
[2026-01-15 19:18:22] -rw------- 1 boinc boinc       357 Jan 15 19:18 output.list
[2026-01-15 19:18:22] -rw-r--r-- 1 boinc boinc       620 Jan 15 19:18 runtime_log
[2026-01-15 19:18:22] -rw------- 1 boinc boinc    696320 Jan 15 19:18 result.tar.gz
[2026-01-15 19:18:22] -rw-r--r-- 1 boinc boinc      8902 Jan 15 19:18 runtime_log.err
[2026-01-15 19:18:22] -rw------- 1 boinc boinc       658 Jan 15 19:18 0UfLDmnRW08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmOKoKDmPcEbAn.diag
[2026-01-15 19:18:22] -rw-r--r-- 1 boinc boinc     11634 Jan 15 19:18 stderr.txt
[2026-01-15 19:18:22] HITS file was successfully produced:
[2026-01-15 19:18:22] -rw------- 1 boinc boinc 152054647 Jan 15 19:17 shared/HITS.pool.root.1
[2026-01-15 19:18:22]  *** Contents of shared directory: ***
[2026-01-15 19:18:22] total 735776
[2026-01-15 19:18:22] -rw-r--r-- 2 boinc boinc 600063254 Jan 15 18:31 ATLAS.root_0
[2026-01-15 19:18:22] -rw-r--r-- 2 boinc boinc    592402 Jan 15 18:31 input.tar.gz
[2026-01-15 19:18:22] -rw-r--r-- 2 boinc boinc     15847 Jan 15 18:31 start_atlas.sh
[2026-01-15 19:18:22] -rw------- 1 boinc boinc 152054647 Jan 15 19:17 HITS.pool.root.1
[2026-01-15 19:18:22] -rw------- 1 boinc boinc    696320 Jan 15 19:18 result.tar.gz
19:18:23 (2593952): run_atlas exited; CPU time 10145.871580
19:18:23 (2593952): called boinc_finish(0)

</stderr_txt>
]]>

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