Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:30:30 (143289): wrapper (7.7.26015): starting
10:30:30 (143289): wrapper: running run_atlas (--nthreads 12)
[2026-01-15 10:30:30] Arguments: --nthreads 12
[2026-01-15 10:30:30] Threads: 12
[2026-01-15 10:30:30] Checking for CVMFS
[2026-01-15 10:30:31] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 10:30:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 10:30:31] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 10:30:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 10:30:32] 2.13.3.0 8759 30202 109972 155177 1 467 35855295 40960000 34411 16776704 0 188120901 99.701 140903229 47011 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-15 10:30:32] CVMFS is ok
[2026-01-15 10:30:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 10:30:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 10:30:32] Further information can be found at the LHC@home message board.
[2026-01-15 10:30:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 10:30:32] Checking for apptainer binary...
[2026-01-15 10:30:32] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 10:30:32] Running /usr/bin/apptainer --version
[2026-01-15 10:30:32] apptainer version 1.4.5-2.el9
[2026-01-15 10:30:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 10:30:33] c-208-39.aglt2.org
[2026-01-15 10:30:33] apptainer works
[2026-01-15 10:30:33] Set ATHENA_PROC_NUMBER=12
[2026-01-15 10:30:33] Set ATHENA_CORE_NUMBER=12
[2026-01-15 10:30:34] Starting ATLAS job with PandaID=6970272245
[2026-01-15 10:30:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 11:42:05]  *** The last 200 lines of the pilot log: ***
[2026-01-15 11:42:05] 2026-01-15 16:41:18,933 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15827 B
[2026-01-15 11:42:05] 2026-01-15 16:41:18,933 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2026-01-15 11:42:05] 2026-01-15 16:41:18,955 | INFO     | sufficient remaining disk space (167453392896 B)
[2026-01-15 11:42:05] 2026-01-15 16:41:18,955 | INFO     | work directory size check will use 4404019200 B as a max limit (20% grace limit added, divider=1)
[2026-01-15 11:42:05] 2026-01-15 16:41:18,956 | INFO     | size of work directory /tmp/boinchome/slots/5/PanDA_Pilot-6970272245: 5008892 B (within 4404019200 B limit)
[2026-01-15 11:42:05] 2026-01-15 16:41:18,956 | INFO     | pfn file=/tmp/boinchome/slots/5/PanDA_Pilot-6970272245/HITS.48188494._000170.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-15 11:42:05] 2026-01-15 16:41:18,956 | INFO     | total size of present files: 0 B (workdir size: 5008892 B)
[2026-01-15 11:42:05] 2026-01-15 16:41:18,956 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/5/PanDA_Pilot-6970272245/HITS.48188494._000170.pool.root.1 since it does not exist
[2026-01-15 11:42:05] 2026-01-15 16:41:19,232 | INFO     | time since job start (4170s) is within the limit (349056.0s)
[2026-01-15 11:42:05] 2026-01-15 16:41:19,476 | INFO     | job 6970272245 has state=finished
[2026-01-15 11:42:05] 2026-01-15 16:41:19,476 | INFO     | preparing for final server update for job 6970272245 in state='finished'
[2026-01-15 11:42:05] 2026-01-15 16:41:19,479 | INFO     | this job has now completed (state=finished)
[2026-01-15 11:42:05] 2026-01-15 16:41:19,480 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-15 11:42:05] 2026-01-15 16:41:19,480 | INFO     | log transfer has been attempted: DONE
[2026-01-15 11:42:05] 2026-01-15 16:41:19,480 | INFO     | job 6970272245 has finished - writing final server update
[2026-01-15 11:42:05] 2026-01-15 16:41:19,480 | INFO     | total number of processed events: 400 (read)
[2026-01-15 11:42:05] 2026-01-15 16:41:19,480 | INFO     | executing command: lscpu
[2026-01-15 11:42:05] 2026-01-15 16:41:19,561 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-15 11:42:05] 2026-01-15 16:41:19,572 | INFO     | number of running child processes to parent process 168059: 1
[2026-01-15 11:42:05] 2026-01-15 16:41:19,572 | INFO     | maximum number of monitored processes: 6
[2026-01-15 11:42:05] 2026-01-15 16:41:21,262 | INFO     | time since job start (4172s) is within the limit (349056.0s)
[2026-01-15 11:42:05] 2026-01-15 16:41:22,078 | INFO     | monitor loop #281: job 0:6970272245 is in state 'finished'
[2026-01-15 11:42:05] 2026-01-15 16:41:22,078 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 11:42:05] 2026-01-15 16:41:23,295 | INFO     | time since job start (4174s) is within the limit (349056.0s)
[2026-01-15 11:42:05] 2026-01-15 16:41:24,598 | INFO     | monitor loop #282: job 0:6970272245 is in state 'finished'
[2026-01-15 11:42:05] 2026-01-15 16:41:24,599 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 11:42:05] 2026-01-15 16:41:25,338 | INFO     | time since job start (4176s) is within the limit (349056.0s)
[2026-01-15 11:42:05] 2026-01-15 16:41:27,103 | INFO     | monitor loop #283: job 0:6970272245 is in state 'finished'
[2026-01-15 11:42:05] 2026-01-15 16:41:27,103 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 11:42:05] 2026-01-15 16:41:27,360 | INFO     | time since job start (4178s) is within the limit (349056.0s)
[2026-01-15 11:42:05] 2026-01-15 16:41:29,375 | INFO     | time since job start (4180s) is within the limit (349056.0s)
[2026-01-15 11:42:05] 2026-01-15 16:41:29,608 | INFO     | monitor loop #284: job 0:6970272245 is in state 'finished'
[2026-01-15 11:42:05] 2026-01-15 16:41:29,608 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 11:42:05] 2026-01-15 16:41:31,325 | INFO     | PID=148360 has CPU usage=10.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 11:42:05] 2026-01-15 16:41:31,326 | INFO     | .. there are 31 such processes running
[2026-01-15 11:42:05] 2026-01-15 16:41:32,121 | INFO     | monitor loop #285: job 0:6970272245 is in state 'finished'
[2026-01-15 11:42:05] 2026-01-15 16:41:32,123 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 11:42:05] 2026-01-15 16:41:32,146 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-15 11:42:05] 2026-01-15 16:41:32,151 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3744.476148437501
[2026-01-15 11:42:05] 2026-01-15 16:41:32,164 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6970272245/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 11:42:05] 2026-01-15 16:41:32,165 | INFO     | extracted standard info from prmon json
[2026-01-15 11:42:05] 2026-01-15 16:41:32,165 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 11:42:05] 2026-01-15 16:41:32,165 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 11:42:05] 2026-01-15 16:41:32,165 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 11:42:05] 2026-01-15 16:41:32,165 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 11:42:05] 2026-01-15 16:41:32,166 | INFO     | fitting pss+swap vs Time
[2026-01-15 11:42:05] 2026-01-15 16:41:32,166 | INFO     | sum of square deviations: 66977278.18333336
[2026-01-15 11:42:05] 2026-01-15 16:41:32,166 | INFO     | sum of deviations: -2617919235.1333337
[2026-01-15 11:42:05] 2026-01-15 16:41:32,166 | INFO     | mean x: 1768493331.6166666
[2026-01-15 11:42:05] 2026-01-15 16:41:32,166 | INFO     | mean y: 2799898.7333333334
[2026-01-15 11:42:05] 2026-01-15 16:41:32,167 | INFO     | intersect: 69127327434.34732
[2026-01-15 11:42:05] 2026-01-15 16:41:32,167 | INFO     | chi2: 0.03039467033609722
[2026-01-15 11:42:05] 2026-01-15 16:41:32,167 | INFO     | current memory leak: -39.09 B/s (using 60 data points, chi2=0.03)
[2026-01-15 11:42:05] 2026-01-15 16:41:32,167 | INFO     | could have reported an average CPU frequency of 3753 MHz (6 samples)
[2026-01-15 11:42:05] 2026-01-15 16:41:32,167 | INFO     | ..............................
[2026-01-15 11:42:05] 2026-01-15 16:41:32,167 | INFO     | . Timing measurements:
[2026-01-15 11:42:05] 2026-01-15 16:41:32,167 | INFO     | . get job = 0 s
[2026-01-15 11:42:05] 2026-01-15 16:41:32,167 | INFO     | . initial setup = 5 s
[2026-01-15 11:42:05] 2026-01-15 16:41:32,167 | INFO     | . payload setup = 33 s
[2026-01-15 11:42:05] 2026-01-15 16:41:32,167 | INFO     | . stage-in = 0 s
[2026-01-15 11:42:05] 2026-01-15 16:41:32,167 | INFO     | . payload execution = 4065 s
[2026-01-15 11:42:05] 2026-01-15 16:41:32,167 | INFO     | . stage-out = 0 s
[2026-01-15 11:42:05] 2026-01-15 16:41:32,167 | INFO     | . log creation = 0 s
[2026-01-15 11:42:05] 2026-01-15 16:41:32,167 | INFO     | ..............................
[2026-01-15 11:42:05] 2026-01-15 16:41:32,253 | INFO     | 
[2026-01-15 11:42:05] 2026-01-15 16:41:32,253 | INFO     | job summary report
[2026-01-15 11:42:05] 2026-01-15 16:41:32,253 | INFO     | --------------------------------------------------
[2026-01-15 11:42:05] 2026-01-15 16:41:32,253 | INFO     | PanDA job id: 6970272245
[2026-01-15 11:42:05] 2026-01-15 16:41:32,253 | INFO     | task id: 48188494
[2026-01-15 11:42:05] 2026-01-15 16:41:32,253 | INFO     | errors: (none)
[2026-01-15 11:42:05] 2026-01-15 16:41:32,253 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-15 11:42:05] 2026-01-15 16:41:32,253 | INFO     | pilot state: finished 
[2026-01-15 11:42:05] 2026-01-15 16:41:32,253 | INFO     | transexitcode: 0
[2026-01-15 11:42:05] 2026-01-15 16:41:32,253 | INFO     | exeerrorcode: 0
[2026-01-15 11:42:05] 2026-01-15 16:41:32,253 | INFO     | exeerrordiag: 
[2026-01-15 11:42:05] 2026-01-15 16:41:32,253 | INFO     | exitcode: 0
[2026-01-15 11:42:05] 2026-01-15 16:41:32,253 | INFO     | exitmsg: OK
[2026-01-15 11:42:05] 2026-01-15 16:41:32,253 | INFO     | cpuconsumptiontime: 29212 s
[2026-01-15 11:42:05] 2026-01-15 16:41:32,253 | INFO     | nevents: 400
[2026-01-15 11:42:05] 2026-01-15 16:41:32,253 | INFO     | neventsw: 0
[2026-01-15 11:42:05] 2026-01-15 16:41:32,253 | INFO     | pid: 168059
[2026-01-15 11:42:05] 2026-01-15 16:41:32,253 | INFO     | pgrp: 168059
[2026-01-15 11:42:05] 2026-01-15 16:41:32,253 | INFO     | corecount: 12
[2026-01-15 11:42:05] 2026-01-15 16:41:32,253 | INFO     | event service: False
[2026-01-15 11:42:05] 2026-01-15 16:41:32,254 | INFO     | sizes: {0: 2283948, 1: 2284147, 11: 2284147, 22: 2284175, 31: 2284465, 33: 2284493, 4102: 2310582, 4104: 2319580, 4107: 2319636, 4122: 2319858}
[2026-01-15 11:42:05] 2026-01-15 16:41:32,254 | INFO     | --------------------------------------------------
[2026-01-15 11:42:05] 2026-01-15 16:41:32,254 | INFO     | 
[2026-01-15 11:42:05] 2026-01-15 16:41:32,254 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2026-01-15 11:42:05] 2026-01-15 16:41:32,284 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 11:42:05] 2026-01-15 16:41:32,285 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 11:42:05] 2026-01-15 16:41:32,285 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 11:42:05] 2026-01-15 16:41:32,285 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 11:42:05] 2026-01-15 16:41:32,285 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 11:42:05] 2026-01-15 16:41:32,285 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 11:42:05] 2026-01-15 16:41:32,285 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 11:42:05] 2026-01-15 16:41:32,285 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 11:42:05] 2026-01-15 16:41:32,285 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 11:42:05] 2026-01-15 16:41:32,285 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 11:42:05] 2026-01-15 16:41:32,285 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 11:42:05] 2026-01-15 16:41:32,285 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 11:42:05] 2026-01-15 16:41:32,285 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 11:42:05] 2026-01-15 16:41:32,285 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 11:42:05] 2026-01-15 16:41:32,285 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 11:42:05] 2026-01-15 16:41:32,285 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 11:42:05] 2026-01-15 16:41:32,285 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 11:42:05] 2026-01-15 16:41:32,285 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 11:42:05] 2026-01-15 16:41:32,285 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 11:42:05] 2026-01-15 16:41:32,285 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 11:42:05] 2026-01-15 16:41:32,286 | INFO     | job 6970272245 has completed (purged errors)
[2026-01-15 11:42:05] 2026-01-15 16:41:32,286 | INFO     | overall cleanup function is called
[2026-01-15 11:42:05] 2026-01-15 16:41:33,292 | INFO     | --- collectZombieJob: --- 10, [168059]
[2026-01-15 11:42:05] 2026-01-15 16:41:33,292 | INFO     | zombie collector waiting for pid 168059
[2026-01-15 11:42:05] 2026-01-15 16:41:33,292 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 11:42:05] 2026-01-15 16:41:33,292 | INFO     | collected zombie processes
[2026-01-15 11:42:05] 2026-01-15 16:41:33,292 | INFO     | will attempt to kill all subprocesses of pid=168059
[2026-01-15 11:42:05] 2026-01-15 16:41:33,875 | INFO     | process IDs to be killed: [168059] (in reverse order)
[2026-01-15 11:42:05] 2026-01-15 16:41:34,140 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 11:42:05] 2026-01-15 16:41:34,142 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 11:42:05] 2026-01-15 16:41:34,165 | INFO     | did not find any defunct processes belonging to 168059
[2026-01-15 11:42:05] 2026-01-15 16:41:34,186 | INFO     | did not find any defunct processes belonging to 168059
[2026-01-15 11:42:05] 2026-01-15 16:41:34,186 | INFO     | ready for new job
[2026-01-15 11:42:05] 2026-01-15 16:41:34,187 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 11:42:05] 2026-01-15 16:41:34,188 | INFO     | ***************************************
[2026-01-15 11:42:05] 2026-01-15 16:41:34,188 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 11:42:05] 2026-01-15 16:41:34,188 | INFO     | ***************************************
[2026-01-15 11:42:05] 2026-01-15 16:41:34,188 | INFO     | 
[2026-01-15 11:42:05] 2026-01-15 16:41:34,193 | INFO     | architecture information:
[2026-01-15 11:42:05] 2026-01-15 16:41:34,193 | INFO     | executing command: cat /etc/os-release
[2026-01-15 11:42:05] 2026-01-15 16:41:34,207 | INFO     | cat /etc/os-release:
[2026-01-15 11:42:05] NAME="CentOS Linux"
[2026-01-15 11:42:05] VERSION="7 (Core)"
[2026-01-15 11:42:05] ID="centos"
[2026-01-15 11:42:05] ID_LIKE="rhel fedora"
[2026-01-15 11:42:05] VERSION_ID="7"
[2026-01-15 11:42:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 11:42:05] ANSI_COLOR="0;31"
[2026-01-15 11:42:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 11:42:05] HOME_URL="https://www.centos.org/"
[2026-01-15 11:42:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 11:42:05] 
[2026-01-15 11:42:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 11:42:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 11:42:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 11:42:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 11:42:05] 
[2026-01-15 11:42:05] 2026-01-15 16:41:34,207 | INFO     | ***************************************
[2026-01-15 11:42:05] 2026-01-15 16:41:34,710 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2026-01-15 11:42:05] 2026-01-15 16:41:34,738 | INFO     | sufficient remaining disk space (167462830080 B)
[2026-01-15 11:42:05] 2026-01-15 16:41:34,739 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 11:42:05] 2026-01-15 16:41:34,739 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 11:42:05] 2026-01-15 16:41:34,739 | INFO     | update_server=False
[2026-01-15 11:42:05] 2026-01-15 16:41:34,739 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 11:42:05] 2026-01-15 16:41:35,242 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 11:42:05] 2026-01-15 16:41:35,326 | INFO     | all data control threads have been joined
[2026-01-15 11:42:05] 2026-01-15 16:41:35,629 | INFO     | all job control threads have been joined
[2026-01-15 11:42:05] 2026-01-15 16:41:35,641 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 11:42:05] 2026-01-15 16:41:35,641 | INFO     | aborting loop
[2026-01-15 11:42:05] 2026-01-15 16:41:35,745 | INFO     | [job] retrieve thread has finished
[2026-01-15 11:42:05] 2026-01-15 16:41:35,931 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 11:42:05] 2026-01-15 16:41:36,033 | INFO     | all payload control threads have been joined
[2026-01-15 11:42:05] 2026-01-15 16:41:36,239 | INFO     | [job] validate thread has finished
[2026-01-15 11:42:05] 2026-01-15 16:41:36,314 | INFO     | [payload] validate_post thread has finished
[2026-01-15 11:42:05] 2026-01-15 16:41:36,331 | INFO     | [data] control thread has finished
[2026-01-15 11:42:05] 2026-01-15 16:41:36,589 | INFO     | [data] copytool_in thread has finished
[2026-01-15 11:42:05] 2026-01-15 16:41:36,635 | INFO     | [job] control thread has finished
[2026-01-15 11:42:05] 2026-01-15 16:41:36,647 | INFO     | [job] job monitor thread has finished
[2026-01-15 11:42:05] 2026-01-15 16:41:37,041 | INFO     | [payload] control thread has finished
[2026-01-15 11:42:05] 2026-01-15 16:41:37,145 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 11:42:05] 2026-01-15 16:41:37,146 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 11:42:05] 2026-01-15 16:41:37,161 | INFO     | [payload] failed_post thread has finished
[2026-01-15 11:42:05] 2026-01-15 16:41:37,250 | INFO     | [data] copytool_out thread has finished
[2026-01-15 11:42:05] 2026-01-15 16:41:37,271 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 11:42:05] 2026-01-15 16:41:37,634 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 11:42:05] 2026-01-15 16:41:38,277 | INFO     | [job] queue monitor thread has finished
[2026-01-15 11:42:05] 2026-01-15 16:41:41,642 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 11:42:05] 2026-01-15 16:41:45,695 | INFO     | job.realtimelogging is not enabled
[2026-01-15 11:42:05] 2026-01-15 16:41:46,701 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 11:42:05] 2026-01-15 16:41:55,030 | INFO     | [monitor] cgroup control has ended
[2026-01-15 11:42:05] 2026-01-15 16:41:56,586 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139978005894976)>', '<ExcThread(monitor, started 139977446897408)>']
[2026-01-15 11:42:05] 2026-01-15 16:42:01,612 | INFO     | all workflow threads have been joined
[2026-01-15 11:42:05] 2026-01-15 16:42:01,612 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 11:42:05] 2026-01-15 16:42:01,613 | INFO     | traces error code: 0
[2026-01-15 11:42:05] 2026-01-15 16:42:01,613 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 11:42:05] 2026-01-15 16:42:05,260 | INFO     | PID=148360 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-15 11:42:05] 2026-01-15 16:42:05,261 | INFO     | .. there are 31 such processes running
[2026-01-15 11:42:05] 2026-01-15 16:42:05,278 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 11:42:05] 2026-01-15 16:42:05,278 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 11:42:05] 2026-01-15 16:42:05,278 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 11:42:05] 2026-01-15 16:42:05,278 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 11:42:05] 2026-01-15 16:42:05,278 | INFO     | [monitor] control thread has ended
[2026-01-15 11:42:05] 2026-01-15 16:42:05,423 [wrapper] ==== pilot stdout END ====
[2026-01-15 11:42:05] 2026-01-15 16:42:05,443 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 11:42:05] 2026-01-15 16:42:05,449 [wrapper] pilotpid: 148360
[2026-01-15 11:42:05] 2026-01-15 16:42:05,451 [wrapper] Pilot exit status: 0
[2026-01-15 11:42:05] 2026-01-15 16:42:05,531 [wrapper] pandaids: 6970272245
[2026-01-15 11:42:05] 2026-01-15 16:42:05,652 [wrapper] cleanup supervisor_pilot  606721 148361
[2026-01-15 11:42:05] 2026-01-15 16:42:05,656 [wrapper] Test setup, not cleaning
[2026-01-15 11:42:05] 2026-01-15 16:42:05,666 [wrapper] apfmon messages muted
[2026-01-15 11:42:05] 2026-01-15 16:42:05,670 [wrapper] ==== wrapper stdout END ====
[2026-01-15 11:42:05] 2026-01-15 16:42:05,674 [wrapper] ==== wrapper stderr END ====
[2026-01-15 11:42:05]  *** Error codes and diagnostics ***
[2026-01-15 11:42:05]     "exeErrorCode": 0,
[2026-01-15 11:42:05]     "exeErrorDiag": "",
[2026-01-15 11:42:05]     "pilotErrorCode": 0,
[2026-01-15 11:42:05]     "pilotErrorDiag": "",
[2026-01-15 11:42:05]  *** Listing of results directory ***
[2026-01-15 11:42:05] total 555284
[2026-01-15 11:42:05] -rw-r--r--. 1 boincer umatlas    579449 Jan 15 03:34 pilot3.tar.gz
[2026-01-15 11:42:05] -rwx------. 1 boincer umatlas     36322 Jan 15 03:39 runpilot2-wrapper.sh
[2026-01-15 11:42:05] -rw-r--r--. 1 boincer umatlas      5112 Jan 15 03:44 queuedata.json
[2026-01-15 11:42:05] -rw-r--r--. 1 boincer umatlas       100 Jan 15 10:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 11:42:05] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 15 10:30 run_atlas
[2026-01-15 11:42:05] -rw-r--r--. 1 boincer umatlas       105 Jan 15 10:30 job.xml
[2026-01-15 11:42:05] -rw-r--r--. 2 boincer umatlas 308673822 Jan 15 10:30 EVNT.48188490._000007.pool.root.1
[2026-01-15 11:42:05] -rw-r--r--. 2 boincer umatlas     15847 Jan 15 10:30 start_atlas.sh
[2026-01-15 11:42:05] drwxrwx--x. 2 boincer umatlas      4096 Jan 15 10:30 shared
[2026-01-15 11:42:05] -rw-r--r--. 2 boincer umatlas    592415 Jan 15 10:30 input.tar.gz
[2026-01-15 11:42:05] -rw-r--r--. 1 boincer umatlas         0 Jan 15 10:30 boinc_lockfile
[2026-01-15 11:42:05] -rw-r--r--. 1 boincer umatlas      2625 Jan 15 10:30 pandaJob.out
[2026-01-15 11:42:05] -rw-------. 1 boincer umatlas        57 Jan 15 10:30 setup.sh.local
[2026-01-15 11:42:05] -rw-------. 1 boincer umatlas   1004083 Jan 15 10:31 agis_schedconf.cvmfs.json
[2026-01-15 11:42:05] -rw-------. 1 boincer umatlas   1516246 Jan 15 10:31 agis_ddmendpoints.agis.ALL.json
[2026-01-15 11:42:05] drwx------. 5 boincer umatlas      4096 Jan 15 10:31 pilot3
[2026-01-15 11:42:05] -rw-r--r--. 1 boincer umatlas      7185 Jan 15 11:38 init_data.xml
[2026-01-15 11:42:05] -rw-------. 1 boincer umatlas 254020674 Jan 15 11:40 HITS.48188494._000170.pool.root.1
[2026-01-15 11:42:05] -rw-r--r--. 1 boincer umatlas       530 Jan 15 11:40 boinc_task_state.xml
[2026-01-15 11:42:05] -rw-------. 1 boincer umatlas      1047 Jan 15 11:41 memory_monitor_summary.json
[2026-01-15 11:42:05] -rw-------. 1 boincer umatlas    421508 Jan 15 11:41 log.48188494._000170.job.log.tgz.1
[2026-01-15 11:42:05] -rw-------. 1 boincer umatlas      7793 Jan 15 11:41 heartbeat.json
[2026-01-15 11:42:05] -rw-r--r--. 1 boincer umatlas      8192 Jan 15 11:42 boinc_mmap_file
[2026-01-15 11:42:05] -rw-r--r--. 1 boincer umatlas        27 Jan 15 11:42 wrapper_checkpoint.txt
[2026-01-15 11:42:05] -rw-------. 1 boincer umatlas        95 Jan 15 11:42 pilot_heartbeat.json
[2026-01-15 11:42:05] -rw-------. 1 boincer umatlas       822 Jan 15 11:42 pilotlog.txt
[2026-01-15 11:42:05] -rw-------. 1 boincer umatlas    583513 Jan 15 11:42 log.48188494._000170.job.log.1
[2026-01-15 11:42:05] -rw-------. 1 boincer umatlas       357 Jan 15 11:42 output.list
[2026-01-15 11:42:05] -rw-r--r--. 1 boincer umatlas       620 Jan 15 11:42 runtime_log
[2026-01-15 11:42:05] -rw-------. 1 boincer umatlas   1024000 Jan 15 11:42 result.tar.gz
[2026-01-15 11:42:05] -rw-r--r--. 1 boincer umatlas      9344 Jan 15 11:42 runtime_log.err
[2026-01-15 11:42:05] -rw-------. 1 boincer umatlas       657 Jan 15 11:42 dWrKDmM4X08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmuooKDmgogepm.diag
[2026-01-15 11:42:05] -rw-r--r--. 1 boincer umatlas      2078 Jan 15 11:42 stderr.txt
[2026-01-15 11:42:06] HITS file was successfully produced:
[2026-01-15 11:42:06] -rw-------. 1 boincer umatlas 254020674 Jan 15 11:40 shared/HITS.pool.root.1
[2026-01-15 11:42:06]  *** Contents of shared directory: ***
[2026-01-15 11:42:06] total 551112
[2026-01-15 11:42:06] -rw-r--r--. 2 boincer umatlas 308673822 Jan 15 10:30 ATLAS.root_0
[2026-01-15 11:42:06] -rw-r--r--. 2 boincer umatlas     15847 Jan 15 10:30 start_atlas.sh
[2026-01-15 11:42:06] -rw-r--r--. 2 boincer umatlas    592415 Jan 15 10:30 input.tar.gz
[2026-01-15 11:42:06] -rw-------. 1 boincer umatlas 254020674 Jan 15 11:40 HITS.pool.root.1
[2026-01-15 11:42:06] -rw-------. 1 boincer umatlas   1024000 Jan 15 11:42 result.tar.gz
11:42:07 (143289): run_atlas exited; CPU time 29317.526614
11:42:07 (143289): called boinc_finish(0)

</stderr_txt>
]]>

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