Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:22:05 (253781): wrapper (7.7.26015): starting
10:22:05 (253781): wrapper: running run_atlas (--nthreads 10)
[2026-01-15 10:22:05] Arguments: --nthreads 10
[2026-01-15 10:22:05] Threads: 10
[2026-01-15 10:22:05] Checking for CVMFS
[2026-01-15 10:22:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 10:22:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 10:22:06] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 10:22:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 10:22:06] 2.13.3.0 12348 102225 408068 155177 3 458 24004380 32935937 27690 16776704 0 366783371 99.490 483291335 34617 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-15 10:22:06] CVMFS is ok
[2026-01-15 10:22:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 10:22:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 10:22:06] Further information can be found at the LHC@home message board.
[2026-01-15 10:22:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 10:22:06] Checking for apptainer binary...
[2026-01-15 10:22:06] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 10:22:06] Running /usr/bin/apptainer --version
[2026-01-15 10:22:06] apptainer version 1.4.5-2.el9
[2026-01-15 10:22:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 10:22:06] c6-12-27-2.aglt2.org
[2026-01-15 10:22:06] apptainer works
[2026-01-15 10:22:06] Set ATHENA_PROC_NUMBER=10
[2026-01-15 10:22:06] Set ATHENA_CORE_NUMBER=10
[2026-01-15 10:22:07] Starting ATLAS job with PandaID=6970458396
[2026-01-15 10:22:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 11:28:53]  *** The last 200 lines of the pilot log: ***
[2026-01-15 11:28:53] 2026-01-15 16:28:05,815 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-15 11:28:53] 2026-01-15 16:28:05,839 | INFO     | sufficient remaining disk space (91201994752 B)
[2026-01-15 11:28:53] 2026-01-15 16:28:05,839 | INFO     | work directory size check will use 4404019200 B as a max limit (20% grace limit added, divider=1)
[2026-01-15 11:28:53] 2026-01-15 16:28:05,840 | INFO     | size of work directory /tmp/boinchome/slots/2/PanDA_Pilot-6970458396: 4521698 B (within 4404019200 B limit)
[2026-01-15 11:28:53] 2026-01-15 16:28:05,840 | INFO     | pfn file=/tmp/boinchome/slots/2/PanDA_Pilot-6970458396/HITS.48215263._049621.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-15 11:28:53] 2026-01-15 16:28:05,840 | INFO     | total size of present files: 0 B (workdir size: 4521698 B)
[2026-01-15 11:28:53] 2026-01-15 16:28:05,840 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/2/PanDA_Pilot-6970458396/HITS.48215263._049621.pool.root.1 since it does not exist
[2026-01-15 11:28:53] 2026-01-15 16:28:06,346 | INFO     | number of running child processes to parent process 265978: 1
[2026-01-15 11:28:53] 2026-01-15 16:28:06,346 | INFO     | maximum number of monitored processes: 6
[2026-01-15 11:28:53] 2026-01-15 16:28:07,372 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-15 11:28:53] 2026-01-15 16:28:07,489 | INFO     | time since job start (3939s) is within the limit (349056.0s)
[2026-01-15 11:28:53] 2026-01-15 16:28:08,859 | INFO     | monitor loop #269: job 0:6970458396 is in state 'finished'
[2026-01-15 11:28:53] 2026-01-15 16:28:08,859 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 11:28:53] 2026-01-15 16:28:09,470 | INFO     | job 6970458396 has state=finished
[2026-01-15 11:28:53] 2026-01-15 16:28:09,470 | INFO     | preparing for final server update for job 6970458396 in state='finished'
[2026-01-15 11:28:53] 2026-01-15 16:28:09,471 | INFO     | this job has now completed (state=finished)
[2026-01-15 11:28:53] 2026-01-15 16:28:09,471 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-15 11:28:53] 2026-01-15 16:28:09,471 | INFO     | log transfer has been attempted: DONE
[2026-01-15 11:28:53] 2026-01-15 16:28:09,471 | INFO     | job 6970458396 has finished - writing final server update
[2026-01-15 11:28:53] 2026-01-15 16:28:09,471 | INFO     | total number of processed events: 400 (read)
[2026-01-15 11:28:53] 2026-01-15 16:28:09,477 | INFO     | executing command: lscpu
[2026-01-15 11:28:53] 2026-01-15 16:28:09,496 | INFO     | time since job start (3941s) is within the limit (349056.0s)
[2026-01-15 11:28:53] 2026-01-15 16:28:09,605 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-15 11:28:53] 2026-01-15 16:28:11,364 | INFO     | monitor loop #270: job 0:6970458396 is in state 'finished'
[2026-01-15 11:28:53] 2026-01-15 16:28:11,364 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 11:28:53] 2026-01-15 16:28:11,506 | INFO     | time since job start (3943s) is within the limit (349056.0s)
[2026-01-15 11:28:53] 2026-01-15 16:28:13,514 | INFO     | time since job start (3945s) is within the limit (349056.0s)
[2026-01-15 11:28:53] 2026-01-15 16:28:13,869 | INFO     | monitor loop #271: job 0:6970458396 is in state 'finished'
[2026-01-15 11:28:53] 2026-01-15 16:28:13,869 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 11:28:53] 2026-01-15 16:28:15,383 | INFO     | PID=257470 has CPU usage=13.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 11:28:53] 2026-01-15 16:28:15,383 | INFO     | .. there are 24 such processes running
[2026-01-15 11:28:53] 2026-01-15 16:28:16,379 | INFO     | monitor loop #272: job 0:6970458396 is in state 'finished'
[2026-01-15 11:28:53] 2026-01-15 16:28:16,379 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 11:28:53] 2026-01-15 16:28:16,384 | INFO     | time since job start (3948s) is within the limit (349056.0s)
[2026-01-15 11:28:53] 2026-01-15 16:28:18,395 | INFO     | time since job start (3950s) is within the limit (349056.0s)
[2026-01-15 11:28:53] 2026-01-15 16:28:18,395 | INFO     | 3953s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-15 11:28:53] 2026-01-15 16:28:18,884 | INFO     | monitor loop #273: job 0:6970458396 is in state 'finished'
[2026-01-15 11:28:53] 2026-01-15 16:28:18,884 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 11:28:53] 2026-01-15 16:28:19,817 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-15 11:28:53] 2026-01-15 16:28:19,829 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2649.6842916666656
[2026-01-15 11:28:53] 2026-01-15 16:28:19,845 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6970458396/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 11:28:53] 2026-01-15 16:28:19,846 | INFO     | extracted standard info from prmon json
[2026-01-15 11:28:53] 2026-01-15 16:28:19,846 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 11:28:53] 2026-01-15 16:28:19,846 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 11:28:53] 2026-01-15 16:28:19,847 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 11:28:53] 2026-01-15 16:28:19,847 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 11:28:53] 2026-01-15 16:28:19,848 | INFO     | fitting pss+swap vs Time
[2026-01-15 11:28:53] 2026-01-15 16:28:19,848 | INFO     | sum of square deviations: 57410400.87719295
[2026-01-15 11:28:53] 2026-01-15 16:28:19,849 | INFO     | sum of deviations: -2279571367.2807016
[2026-01-15 11:28:53] 2026-01-15 16:28:19,849 | INFO     | mean x: 1768492605.1403508
[2026-01-15 11:28:53] 2026-01-15 16:28:19,849 | INFO     | mean y: 2768090.035087719
[2026-01-15 11:28:53] 2026-01-15 16:28:19,849 | INFO     | intersect: 70223582512.65532
[2026-01-15 11:28:53] 2026-01-15 16:28:19,849 | INFO     | chi2: 0.010122572572858408
[2026-01-15 11:28:53] 2026-01-15 16:28:19,849 | INFO     | current memory leak: -39.71 B/s (using 57 data points, chi2=0.01)
[2026-01-15 11:28:53] 2026-01-15 16:28:19,850 | INFO     | could have reported an average CPU frequency of 2673 MHz (6 samples)
[2026-01-15 11:28:53] 2026-01-15 16:28:19,850 | INFO     | ..............................
[2026-01-15 11:28:53] 2026-01-15 16:28:19,850 | INFO     | . Timing measurements:
[2026-01-15 11:28:53] 2026-01-15 16:28:19,850 | INFO     | . get job = 0 s
[2026-01-15 11:28:53] 2026-01-15 16:28:19,850 | INFO     | . initial setup = 3 s
[2026-01-15 11:28:53] 2026-01-15 16:28:19,850 | INFO     | . payload setup = 11 s
[2026-01-15 11:28:53] 2026-01-15 16:28:19,850 | INFO     | . stage-in = 0 s
[2026-01-15 11:28:53] 2026-01-15 16:28:19,850 | INFO     | . payload execution = 3897 s
[2026-01-15 11:28:53] 2026-01-15 16:28:19,850 | INFO     | . stage-out = 1 s
[2026-01-15 11:28:53] 2026-01-15 16:28:19,850 | INFO     | . log creation = 0 s
[2026-01-15 11:28:53] 2026-01-15 16:28:19,850 | INFO     | ..............................
[2026-01-15 11:28:53] 2026-01-15 16:28:19,993 | INFO     | 
[2026-01-15 11:28:53] 2026-01-15 16:28:19,993 | INFO     | job summary report
[2026-01-15 11:28:53] 2026-01-15 16:28:19,993 | INFO     | --------------------------------------------------
[2026-01-15 11:28:53] 2026-01-15 16:28:19,993 | INFO     | PanDA job id: 6970458396
[2026-01-15 11:28:53] 2026-01-15 16:28:19,993 | INFO     | task id: 48215263
[2026-01-15 11:28:53] 2026-01-15 16:28:19,993 | INFO     | errors: (none)
[2026-01-15 11:28:53] 2026-01-15 16:28:19,993 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-15 11:28:53] 2026-01-15 16:28:19,993 | INFO     | pilot state: finished 
[2026-01-15 11:28:53] 2026-01-15 16:28:19,993 | INFO     | transexitcode: 0
[2026-01-15 11:28:53] 2026-01-15 16:28:19,993 | INFO     | exeerrorcode: 0
[2026-01-15 11:28:53] 2026-01-15 16:28:19,993 | INFO     | exeerrordiag: 
[2026-01-15 11:28:53] 2026-01-15 16:28:19,993 | INFO     | exitcode: 0
[2026-01-15 11:28:53] 2026-01-15 16:28:19,993 | INFO     | exitmsg: OK
[2026-01-15 11:28:53] 2026-01-15 16:28:19,994 | INFO     | cpuconsumptiontime: 27605 s
[2026-01-15 11:28:53] 2026-01-15 16:28:19,994 | INFO     | nevents: 400
[2026-01-15 11:28:53] 2026-01-15 16:28:19,994 | INFO     | neventsw: 0
[2026-01-15 11:28:53] 2026-01-15 16:28:19,994 | INFO     | pid: 265978
[2026-01-15 11:28:53] 2026-01-15 16:28:19,994 | INFO     | pgrp: 265978
[2026-01-15 11:28:53] 2026-01-15 16:28:19,994 | INFO     | corecount: 10
[2026-01-15 11:28:53] 2026-01-15 16:28:19,994 | INFO     | event service: False
[2026-01-15 11:28:53] 2026-01-15 16:28:19,994 | INFO     | sizes: {0: 2283124, 1: 2283980, 11: 2284242, 12: 2284270, 3913: 2310110, 3914: 2319108, 3917: 2319320, 3930: 2319514}
[2026-01-15 11:28:53] 2026-01-15 16:28:19,994 | INFO     | --------------------------------------------------
[2026-01-15 11:28:53] 2026-01-15 16:28:19,994 | INFO     | 
[2026-01-15 11:28:53] 2026-01-15 16:28:19,994 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-15 11:28:53] 2026-01-15 16:28:20,090 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 11:28:53] 2026-01-15 16:28:20,090 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 11:28:53] 2026-01-15 16:28:20,090 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 11:28:53] 2026-01-15 16:28:20,091 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 11:28:53] 2026-01-15 16:28:20,091 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 11:28:53] 2026-01-15 16:28:20,091 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 11:28:53] 2026-01-15 16:28:20,091 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 11:28:53] 2026-01-15 16:28:20,091 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 11:28:53] 2026-01-15 16:28:20,091 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 11:28:53] 2026-01-15 16:28:20,091 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 11:28:53] 2026-01-15 16:28:20,091 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 11:28:53] 2026-01-15 16:28:20,091 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 11:28:53] 2026-01-15 16:28:20,091 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 11:28:53] 2026-01-15 16:28:20,091 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 11:28:53] 2026-01-15 16:28:20,091 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 11:28:53] 2026-01-15 16:28:20,091 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 11:28:53] 2026-01-15 16:28:20,091 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 11:28:53] 2026-01-15 16:28:20,091 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 11:28:53] 2026-01-15 16:28:20,091 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 11:28:53] 2026-01-15 16:28:20,091 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 11:28:53] 2026-01-15 16:28:20,092 | INFO     | job 6970458396 has completed (purged errors)
[2026-01-15 11:28:53] 2026-01-15 16:28:20,092 | INFO     | overall cleanup function is called
[2026-01-15 11:28:53] 2026-01-15 16:28:21,105 | INFO     | --- collectZombieJob: --- 10, [265978]
[2026-01-15 11:28:53] 2026-01-15 16:28:21,105 | INFO     | zombie collector waiting for pid 265978
[2026-01-15 11:28:53] 2026-01-15 16:28:21,105 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 11:28:53] 2026-01-15 16:28:21,105 | INFO     | collected zombie processes
[2026-01-15 11:28:53] 2026-01-15 16:28:21,105 | INFO     | will attempt to kill all subprocesses of pid=265978
[2026-01-15 11:28:53] 2026-01-15 16:28:21,675 | INFO     | process IDs to be killed: [265978] (in reverse order)
[2026-01-15 11:28:53] 2026-01-15 16:28:21,808 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 11:28:53] 2026-01-15 16:28:21,808 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 11:28:53] 2026-01-15 16:28:21,826 | INFO     | did not find any defunct processes belonging to 265978
[2026-01-15 11:28:53] 2026-01-15 16:28:21,842 | INFO     | did not find any defunct processes belonging to 265978
[2026-01-15 11:28:53] 2026-01-15 16:28:21,842 | INFO     | ready for new job
[2026-01-15 11:28:53] 2026-01-15 16:28:21,843 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 11:28:53] 2026-01-15 16:28:21,844 | INFO     | ***************************************
[2026-01-15 11:28:53] 2026-01-15 16:28:21,844 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 11:28:53] 2026-01-15 16:28:21,844 | INFO     | ***************************************
[2026-01-15 11:28:53] 2026-01-15 16:28:21,844 | INFO     | 
[2026-01-15 11:28:53] 2026-01-15 16:28:21,850 | INFO     | architecture information:
[2026-01-15 11:28:53] 2026-01-15 16:28:21,850 | INFO     | executing command: cat /etc/os-release
[2026-01-15 11:28:53] 2026-01-15 16:28:21,886 | INFO     | cat /etc/os-release:
[2026-01-15 11:28:53] NAME="CentOS Linux"
[2026-01-15 11:28:53] VERSION="7 (Core)"
[2026-01-15 11:28:53] ID="centos"
[2026-01-15 11:28:53] ID_LIKE="rhel fedora"
[2026-01-15 11:28:53] VERSION_ID="7"
[2026-01-15 11:28:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 11:28:53] ANSI_COLOR="0;31"
[2026-01-15 11:28:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 11:28:53] HOME_URL="https://www.centos.org/"
[2026-01-15 11:28:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 11:28:53] 
[2026-01-15 11:28:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 11:28:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 11:28:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 11:28:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 11:28:53] 
[2026-01-15 11:28:53] 2026-01-15 16:28:21,887 | INFO     | ***************************************
[2026-01-15 11:28:53] 2026-01-15 16:28:22,390 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-15 11:28:53] 2026-01-15 16:28:22,412 | INFO     | sufficient remaining disk space (90786758656 B)
[2026-01-15 11:28:53] 2026-01-15 16:28:22,413 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 11:28:53] 2026-01-15 16:28:22,413 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 11:28:53] 2026-01-15 16:28:22,413 | INFO     | update_server=False
[2026-01-15 11:28:53] 2026-01-15 16:28:22,413 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 11:28:53] 2026-01-15 16:28:22,415 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 11:28:53] 2026-01-15 16:28:22,415 | INFO     | aborting loop
[2026-01-15 11:28:53] 2026-01-15 16:28:22,593 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 11:28:53] 2026-01-15 16:28:22,611 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 11:28:53] 2026-01-15 16:28:23,000 | INFO     | all job control threads have been joined
[2026-01-15 11:28:53] 2026-01-15 16:28:23,000 | INFO     | all data control threads have been joined
[2026-01-15 11:28:53] 2026-01-15 16:28:23,419 | INFO     | [job] retrieve thread has finished
[2026-01-15 11:28:53] 2026-01-15 16:28:23,421 | INFO     | [job] job monitor thread has finished
[2026-01-15 11:28:53] 2026-01-15 16:28:23,423 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 11:28:53] 2026-01-15 16:28:23,493 | INFO     | all payload control threads have been joined
[2026-01-15 11:28:53] 2026-01-15 16:28:23,670 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 11:28:53] 2026-01-15 16:28:23,782 | INFO     | [payload] validate_post thread has finished
[2026-01-15 11:28:53] 2026-01-15 16:28:23,972 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 11:28:53] 2026-01-15 16:28:23,984 | INFO     | [job] validate thread has finished
[2026-01-15 11:28:53] 2026-01-15 16:28:24,006 | INFO     | [job] control thread has finished
[2026-01-15 11:28:53] 2026-01-15 16:28:24,007 | INFO     | [data] control thread has finished
[2026-01-15 11:28:53] 2026-01-15 16:28:24,499 | INFO     | [payload] control thread has finished
[2026-01-15 11:28:53] 2026-01-15 16:28:24,618 | INFO     | [data] copytool_out thread has finished
[2026-01-15 11:28:53] 2026-01-15 16:28:24,763 | INFO     | [data] copytool_in thread has finished
[2026-01-15 11:28:53] 2026-01-15 16:28:24,896 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 11:28:53] 2026-01-15 16:28:25,007 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 11:28:53] 2026-01-15 16:28:25,014 | INFO     | [payload] failed_post thread has finished
[2026-01-15 11:28:53] 2026-01-15 16:28:26,013 | INFO     | [job] queue monitor thread has finished
[2026-01-15 11:28:53] 2026-01-15 16:28:26,602 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 11:28:53] 2026-01-15 16:28:34,495 | INFO     | [monitor] cgroup control has ended
[2026-01-15 11:28:53] 2026-01-15 16:28:35,505 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139936996083520)>', '<ExcThread(monitor, started 139936133015296)>']
[2026-01-15 11:28:53] 2026-01-15 16:28:40,531 | INFO     | all workflow threads have been joined
[2026-01-15 11:28:53] 2026-01-15 16:28:40,531 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 11:28:53] 2026-01-15 16:28:40,531 | INFO     | traces error code: 0
[2026-01-15 11:28:53] 2026-01-15 16:28:40,535 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 11:28:53] 2026-01-15 16:28:52,750 | INFO     | PID=257470 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-15 11:28:53] 2026-01-15 16:28:52,750 | INFO     | .. there are 24 such processes running
[2026-01-15 11:28:53] 2026-01-15 16:28:52,751 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 11:28:53] 2026-01-15 16:28:52,751 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 11:28:53] 2026-01-15 16:28:52,751 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 11:28:53] 2026-01-15 16:28:52,752 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 11:28:53] 2026-01-15 16:28:52,752 | INFO     | [monitor] control thread has ended
[2026-01-15 11:28:53] 2026-01-15 16:28:52,938 [wrapper] ==== pilot stdout END ====
[2026-01-15 11:28:53] 2026-01-15 16:28:52,940 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 11:28:53] 2026-01-15 16:28:52,943 [wrapper] pilotpid: 257470
[2026-01-15 11:28:53] 2026-01-15 16:28:52,945 [wrapper] Pilot exit status: 0
[2026-01-15 11:28:53] 2026-01-15 16:28:52,972 [wrapper] pandaids: 6970458396
[2026-01-15 11:28:53] 2026-01-15 16:28:53,065 [wrapper] cleanup supervisor_pilot  580925 257471
[2026-01-15 11:28:53] 2026-01-15 16:28:53,069 [wrapper] Test setup, not cleaning
[2026-01-15 11:28:53] 2026-01-15 16:28:53,072 [wrapper] apfmon messages muted
[2026-01-15 11:28:53] 2026-01-15 16:28:53,075 [wrapper] ==== wrapper stdout END ====
[2026-01-15 11:28:53] 2026-01-15 16:28:53,077 [wrapper] ==== wrapper stderr END ====
[2026-01-15 11:28:53]  *** Error codes and diagnostics ***
[2026-01-15 11:28:53]     "exeErrorCode": 0,
[2026-01-15 11:28:53]     "exeErrorDiag": "",
[2026-01-15 11:28:53]     "pilotErrorCode": 0,
[2026-01-15 11:28:53]     "pilotErrorDiag": "",
[2026-01-15 11:28:53]  *** Listing of results directory ***
[2026-01-15 11:28:53] total 736956
[2026-01-15 11:28:53] -rw-r--r--. 1 boincer umatlas    579449 Jan 15 03:34 pilot3.tar.gz
[2026-01-15 11:28:53] -rwx------. 1 boincer umatlas     36322 Jan 15 03:37 runpilot2-wrapper.sh
[2026-01-15 11:28:53] -rw-r--r--. 1 boincer umatlas      5112 Jan 15 03:44 queuedata.json
[2026-01-15 11:28:53] -rw-r--r--. 1 boincer umatlas       100 Jan 15 10:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 11:28:53] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 15 10:22 run_atlas
[2026-01-15 11:28:53] -rw-r--r--. 1 boincer umatlas       105 Jan 15 10:22 job.xml
[2026-01-15 11:28:53] -rw-r--r--. 2 boincer umatlas 595325552 Jan 15 10:22 EVNT.32794306._001926.pool.root.1
[2026-01-15 11:28:53] -rw-r--r--. 2 boincer umatlas     15847 Jan 15 10:22 start_atlas.sh
[2026-01-15 11:28:53] drwxrwx--x. 2 boincer umatlas      4096 Jan 15 10:22 shared
[2026-01-15 11:28:53] -rw-r--r--. 2 boincer umatlas    592409 Jan 15 10:22 input.tar.gz
[2026-01-15 11:28:53] -rw-r--r--. 1 boincer umatlas         0 Jan 15 10:22 boinc_lockfile
[2026-01-15 11:28:53] -rw-r--r--. 1 boincer umatlas      2509 Jan 15 10:22 pandaJob.out
[2026-01-15 11:28:53] -rw-------. 1 boincer umatlas        57 Jan 15 10:22 setup.sh.local
[2026-01-15 11:28:53] -rw-------. 1 boincer umatlas   1004083 Jan 15 10:22 agis_schedconf.cvmfs.json
[2026-01-15 11:28:53] -rw-------. 1 boincer umatlas   1516246 Jan 15 10:22 agis_ddmendpoints.agis.ALL.json
[2026-01-15 11:28:53] drwx------. 5 boincer umatlas      4096 Jan 15 10:22 pilot3
[2026-01-15 11:28:53] -rw-------. 1 boincer umatlas 153524517 Jan 15 11:27 HITS.48215263._049621.pool.root.1
[2026-01-15 11:28:53] -rw-r--r--. 1 boincer umatlas       530 Jan 15 11:27 boinc_task_state.xml
[2026-01-15 11:28:53] -rw-r--r--. 1 boincer umatlas      6878 Jan 15 11:27 init_data.xml
[2026-01-15 11:28:53] -rw-------. 1 boincer umatlas      1043 Jan 15 11:27 memory_monitor_summary.json
[2026-01-15 11:28:53] -rw-------. 1 boincer umatlas    362898 Jan 15 11:28 log.48215263._049621.job.log.tgz.1
[2026-01-15 11:28:53] -rw-------. 1 boincer umatlas      7831 Jan 15 11:28 heartbeat.json
[2026-01-15 11:28:53] -rw-r--r--. 1 boincer umatlas        27 Jan 15 11:28 wrapper_checkpoint.txt
[2026-01-15 11:28:53] -rw-r--r--. 1 boincer umatlas      8192 Jan 15 11:28 boinc_mmap_file
[2026-01-15 11:28:53] -rw-------. 1 boincer umatlas        95 Jan 15 11:28 pilot_heartbeat.json
[2026-01-15 11:28:53] -rw-------. 1 boincer umatlas       822 Jan 15 11:28 pilotlog.txt
[2026-01-15 11:28:53] -rw-------. 1 boincer umatlas    575727 Jan 15 11:28 log.48215263._049621.job.log.1
[2026-01-15 11:28:53] -rw-------. 1 boincer umatlas       357 Jan 15 11:28 output.list
[2026-01-15 11:28:53] -rw-r--r--. 1 boincer umatlas       620 Jan 15 11:28 runtime_log
[2026-01-15 11:28:53] -rw-------. 1 boincer umatlas    962560 Jan 15 11:28 result.tar.gz
[2026-01-15 11:28:53] -rw-r--r--. 1 boincer umatlas      9354 Jan 15 11:28 runtime_log.err
[2026-01-15 11:28:53] -rw-------. 1 boincer umatlas       654 Jan 15 11:28 3uEMDmh2X08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmbfoKDmgC6jLo.diag
[2026-01-15 11:28:53] -rw-r--r--. 1 boincer umatlas      2150 Jan 15 11:28 stderr.txt
[2026-01-15 11:28:53] HITS file was successfully produced:
[2026-01-15 11:28:53] -rw-------. 1 boincer umatlas 153524517 Jan 15 11:27 shared/HITS.pool.root.1
[2026-01-15 11:28:53]  *** Contents of shared directory: ***
[2026-01-15 11:28:53] total 732848
[2026-01-15 11:28:53] -rw-r--r--. 2 boincer umatlas 595325552 Jan 15 10:22 ATLAS.root_0
[2026-01-15 11:28:53] -rw-r--r--. 2 boincer umatlas     15847 Jan 15 10:22 start_atlas.sh
[2026-01-15 11:28:53] -rw-r--r--. 2 boincer umatlas    592409 Jan 15 10:22 input.tar.gz
[2026-01-15 11:28:53] -rw-------. 1 boincer umatlas 153524517 Jan 15 11:27 HITS.pool.root.1
[2026-01-15 11:28:53] -rw-------. 1 boincer umatlas    962560 Jan 15 11:28 result.tar.gz
11:28:55 (253781): run_atlas exited; CPU time 27761.753485
11:28:55 (253781): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN