Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:26:38 (2893068): wrapper (7.7.26015): starting
10:26:38 (2893068): wrapper: running run_atlas (--nthreads 9)
[2026-01-15 10:26:38] Arguments: --nthreads 9
[2026-01-15 10:26:38] Threads: 9
[2026-01-15 10:26:38] Checking for CVMFS
[2026-01-15 10:26:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 10:26:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 10:26:39] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 10:26:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 10:26:39] 2.13.3.0 14328 102206 145260 155177 1 265 37749505 40960001 35626 16776704 0 1042340345 99.705 815928714 50271 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-15 10:26:39] CVMFS is ok
[2026-01-15 10:26:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 10:26:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 10:26:39] Further information can be found at the LHC@home message board.
[2026-01-15 10:26:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 10:26:39] Checking for apptainer binary...
[2026-01-15 10:26:39] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 10:26:39] Running /usr/bin/apptainer --version
[2026-01-15 10:26:39] apptainer version 1.4.5-2.el9
[2026-01-15 10:26:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 10:26:40] c8-16-2.aglt2.org
[2026-01-15 10:26:40] apptainer works
[2026-01-15 10:26:40] Set ATHENA_PROC_NUMBER=9
[2026-01-15 10:26:40] Set ATHENA_CORE_NUMBER=9
[2026-01-15 10:26:40] Starting ATLAS job with PandaID=6970458507
[2026-01-15 10:26:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 11:36:43]  *** The last 200 lines of the pilot log: ***
[2026-01-15 11:36:43] 2026-01-15 16:35:50,206 | INFO     |  -- lfn=log.48215263._049732.job.log.tgz.1, status_code=0, status=transferred
[2026-01-15 11:36:43] 2026-01-15 16:35:50,206 | INFO     | stage-out finished correctly
[2026-01-15 11:36:43] 2026-01-15 16:35:51,424 | INFO     | time since job start (4120s) is within the limit (349056.0s)
[2026-01-15 11:36:43] 2026-01-15 16:35:51,585 | INFO     | monitor loop #296: job 0:6970458507 is in state 'finished'
[2026-01-15 11:36:43] 2026-01-15 16:35:51,585 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 11:36:43] 2026-01-15 16:35:51,992 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-15 11:36:43] 2026-01-15 16:35:53,431 | INFO     | time since job start (4122s) is within the limit (349056.0s)
[2026-01-15 11:36:43] 2026-01-15 16:35:54,090 | INFO     | monitor loop #297: job 0:6970458507 is in state 'finished'
[2026-01-15 11:36:43] 2026-01-15 16:35:54,093 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 11:36:43] 2026-01-15 16:35:54,246 | INFO     | job 6970458507 has state=finished
[2026-01-15 11:36:43] 2026-01-15 16:35:54,246 | INFO     | preparing for final server update for job 6970458507 in state='finished'
[2026-01-15 11:36:43] 2026-01-15 16:35:54,247 | INFO     | this job has now completed (state=finished)
[2026-01-15 11:36:43] 2026-01-15 16:35:54,247 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-15 11:36:43] 2026-01-15 16:35:54,247 | INFO     | log transfer has been attempted: DONE
[2026-01-15 11:36:43] 2026-01-15 16:35:54,247 | INFO     | job 6970458507 has finished - writing final server update
[2026-01-15 11:36:43] 2026-01-15 16:35:54,247 | INFO     | total number of processed events: 400 (read)
[2026-01-15 11:36:43] 2026-01-15 16:35:54,256 | INFO     | executing command: lscpu
[2026-01-15 11:36:43] 2026-01-15 16:35:54,421 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-15 11:36:43] 2026-01-15 16:35:55,438 | INFO     | time since job start (4124s) is within the limit (349056.0s)
[2026-01-15 11:36:43] 2026-01-15 16:35:56,599 | INFO     | monitor loop #298: job 0:6970458507 is in state 'finished'
[2026-01-15 11:36:43] 2026-01-15 16:35:56,599 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 11:36:43] 2026-01-15 16:35:57,249 | INFO     | PID=2902461 has CPU usage=9.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 11:36:43] 2026-01-15 16:35:57,249 | INFO     | .. there are 29 such processes running
[2026-01-15 11:36:43] 2026-01-15 16:35:58,259 | INFO     | time since job start (4127s) is within the limit (349056.0s)
[2026-01-15 11:36:43] 2026-01-15 16:35:59,104 | INFO     | monitor loop #299: job 0:6970458507 is in state 'finished'
[2026-01-15 11:36:43] 2026-01-15 16:35:59,108 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 11:36:43] 2026-01-15 16:36:00,267 | INFO     | time since job start (4129s) is within the limit (349056.0s)
[2026-01-15 11:36:43] 2026-01-15 16:36:01,612 | INFO     | monitor loop #300: job 0:6970458507 is in state 'finished'
[2026-01-15 11:36:43] 2026-01-15 16:36:01,612 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 11:36:43] 2026-01-15 16:36:02,274 | INFO     | time since job start (4131s) is within the limit (349056.0s)
[2026-01-15 11:36:43] 2026-01-15 16:36:04,134 | INFO     | monitor loop #301: job 0:6970458507 is in state 'finished'
[2026-01-15 11:36:43] 2026-01-15 16:36:04,134 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 11:36:43] 2026-01-15 16:36:04,282 | INFO     | time since job start (4133s) is within the limit (349056.0s)
[2026-01-15 11:36:43] 2026-01-15 16:36:06,289 | INFO     | time since job start (4135s) is within the limit (349056.0s)
[2026-01-15 11:36:43] 2026-01-15 16:36:06,639 | INFO     | monitor loop #302: job 0:6970458507 is in state 'finished'
[2026-01-15 11:36:43] 2026-01-15 16:36:06,639 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 11:36:43] 2026-01-15 16:36:08,298 | INFO     | time since job start (4137s) is within the limit (349056.0s)
[2026-01-15 11:36:43] 2026-01-15 16:36:08,584 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-15 11:36:43] 2026-01-15 16:36:08,589 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3796.7952578125005
[2026-01-15 11:36:43] 2026-01-15 16:36:08,602 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6970458507/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 11:36:43] 2026-01-15 16:36:08,603 | INFO     | extracted standard info from prmon json
[2026-01-15 11:36:43] 2026-01-15 16:36:08,603 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 11:36:43] 2026-01-15 16:36:08,603 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 11:36:43] 2026-01-15 16:36:08,603 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 11:36:43] 2026-01-15 16:36:08,603 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 11:36:43] 2026-01-15 16:36:08,604 | INFO     | fitting pss+swap vs Time
[2026-01-15 11:36:43] 2026-01-15 16:36:08,604 | INFO     | sum of square deviations: 66959395.0
[2026-01-15 11:36:43] 2026-01-15 16:36:08,604 | INFO     | sum of deviations: -1293272315.5
[2026-01-15 11:36:43] 2026-01-15 16:36:08,604 | INFO     | mean x: 1768492971.5
[2026-01-15 11:36:43] 2026-01-15 16:36:08,604 | INFO     | mean y: 2613188.9166666665
[2026-01-15 11:36:43] 2026-01-15 16:36:08,604 | INFO     | intersect: 34159776648.910305
[2026-01-15 11:36:43] 2026-01-15 16:36:08,605 | INFO     | chi2: 0.0033341037391690013
[2026-01-15 11:36:43] 2026-01-15 16:36:08,605 | INFO     | current memory leak: -19.31 B/s (using 60 data points, chi2=0.00)
[2026-01-15 11:36:43] 2026-01-15 16:36:08,605 | INFO     | could have reported an average CPU frequency of 3794 MHz (6 samples)
[2026-01-15 11:36:43] 2026-01-15 16:36:08,605 | INFO     | ..............................
[2026-01-15 11:36:43] 2026-01-15 16:36:08,605 | INFO     | . Timing measurements:
[2026-01-15 11:36:43] 2026-01-15 16:36:08,605 | INFO     | . get job = 0 s
[2026-01-15 11:36:43] 2026-01-15 16:36:08,605 | INFO     | . initial setup = 2 s
[2026-01-15 11:36:43] 2026-01-15 16:36:08,605 | INFO     | . payload setup = 9 s
[2026-01-15 11:36:43] 2026-01-15 16:36:08,605 | INFO     | . stage-in = 0 s
[2026-01-15 11:36:43] 2026-01-15 16:36:08,605 | INFO     | . payload execution = 4085 s
[2026-01-15 11:36:43] 2026-01-15 16:36:08,605 | INFO     | . stage-out = 0 s
[2026-01-15 11:36:43] 2026-01-15 16:36:08,605 | INFO     | . log creation = 0 s
[2026-01-15 11:36:43] 2026-01-15 16:36:08,605 | INFO     | ..............................
[2026-01-15 11:36:43] 2026-01-15 16:36:08,661 | INFO     | 
[2026-01-15 11:36:43] 2026-01-15 16:36:08,661 | INFO     | job summary report
[2026-01-15 11:36:43] 2026-01-15 16:36:08,661 | INFO     | --------------------------------------------------
[2026-01-15 11:36:43] 2026-01-15 16:36:08,661 | INFO     | PanDA job id: 6970458507
[2026-01-15 11:36:43] 2026-01-15 16:36:08,661 | INFO     | task id: 48215263
[2026-01-15 11:36:43] 2026-01-15 16:36:08,661 | INFO     | errors: (none)
[2026-01-15 11:36:43] 2026-01-15 16:36:08,661 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-15 11:36:43] 2026-01-15 16:36:08,661 | INFO     | pilot state: finished 
[2026-01-15 11:36:43] 2026-01-15 16:36:08,661 | INFO     | transexitcode: 0
[2026-01-15 11:36:43] 2026-01-15 16:36:08,661 | INFO     | exeerrorcode: 0
[2026-01-15 11:36:43] 2026-01-15 16:36:08,661 | INFO     | exeerrordiag: 
[2026-01-15 11:36:43] 2026-01-15 16:36:08,661 | INFO     | exitcode: 0
[2026-01-15 11:36:43] 2026-01-15 16:36:08,661 | INFO     | exitmsg: OK
[2026-01-15 11:36:43] 2026-01-15 16:36:08,661 | INFO     | cpuconsumptiontime: 15535 s
[2026-01-15 11:36:43] 2026-01-15 16:36:08,661 | INFO     | nevents: 400
[2026-01-15 11:36:43] 2026-01-15 16:36:08,661 | INFO     | neventsw: 0
[2026-01-15 11:36:43] 2026-01-15 16:36:08,661 | INFO     | pid: 2915997
[2026-01-15 11:36:43] 2026-01-15 16:36:08,661 | INFO     | pgrp: 2915997
[2026-01-15 11:36:43] 2026-01-15 16:36:08,661 | INFO     | corecount: 9
[2026-01-15 11:36:43] 2026-01-15 16:36:08,661 | INFO     | event service: False
[2026-01-15 11:36:43] 2026-01-15 16:36:08,661 | INFO     | sizes: {0: 2283781, 1: 2283980, 10: 2284242, 11: 2284270, 4098: 2310221, 4099: 2319219, 4101: 2319403, 4118: 2319597}
[2026-01-15 11:36:43] 2026-01-15 16:36:08,662 | INFO     | --------------------------------------------------
[2026-01-15 11:36:43] 2026-01-15 16:36:08,662 | INFO     | 
[2026-01-15 11:36:43] 2026-01-15 16:36:08,662 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-15 11:36:43] 2026-01-15 16:36:08,746 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 11:36:43] 2026-01-15 16:36:08,746 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 11:36:43] 2026-01-15 16:36:08,746 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 11:36:43] 2026-01-15 16:36:08,746 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 11:36:43] 2026-01-15 16:36:08,746 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 11:36:43] 2026-01-15 16:36:08,746 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 11:36:43] 2026-01-15 16:36:08,746 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 11:36:43] 2026-01-15 16:36:08,746 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 11:36:43] 2026-01-15 16:36:08,746 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 11:36:43] 2026-01-15 16:36:08,746 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 11:36:43] 2026-01-15 16:36:08,746 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 11:36:43] 2026-01-15 16:36:08,747 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 11:36:43] 2026-01-15 16:36:08,747 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 11:36:43] 2026-01-15 16:36:08,747 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 11:36:43] 2026-01-15 16:36:08,747 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 11:36:43] 2026-01-15 16:36:08,747 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 11:36:43] 2026-01-15 16:36:08,747 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 11:36:43] 2026-01-15 16:36:08,747 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 11:36:43] 2026-01-15 16:36:08,747 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 11:36:43] 2026-01-15 16:36:08,747 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 11:36:43] 2026-01-15 16:36:08,747 | INFO     | job 6970458507 has completed (purged errors)
[2026-01-15 11:36:43] 2026-01-15 16:36:08,747 | INFO     | overall cleanup function is called
[2026-01-15 11:36:43] 2026-01-15 16:36:09,763 | INFO     | --- collectZombieJob: --- 10, [2915997]
[2026-01-15 11:36:43] 2026-01-15 16:36:09,763 | INFO     | zombie collector waiting for pid 2915997
[2026-01-15 11:36:43] 2026-01-15 16:36:09,763 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 11:36:43] 2026-01-15 16:36:09,763 | INFO     | collected zombie processes
[2026-01-15 11:36:43] 2026-01-15 16:36:09,763 | INFO     | will attempt to kill all subprocesses of pid=2915997
[2026-01-15 11:36:43] 2026-01-15 16:36:10,187 | INFO     | process IDs to be killed: [2915997] (in reverse order)
[2026-01-15 11:36:43] 2026-01-15 16:36:10,433 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 11:36:43] 2026-01-15 16:36:10,433 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 11:36:43] 2026-01-15 16:36:10,459 | INFO     | did not find any defunct processes belonging to 2915997
[2026-01-15 11:36:43] 2026-01-15 16:36:10,485 | INFO     | did not find any defunct processes belonging to 2915997
[2026-01-15 11:36:43] 2026-01-15 16:36:10,485 | INFO     | ready for new job
[2026-01-15 11:36:43] 2026-01-15 16:36:10,485 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 11:36:43] 2026-01-15 16:36:10,486 | INFO     | ***************************************
[2026-01-15 11:36:43] 2026-01-15 16:36:10,486 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 11:36:43] 2026-01-15 16:36:10,486 | INFO     | ***************************************
[2026-01-15 11:36:43] 2026-01-15 16:36:10,486 | INFO     | 
[2026-01-15 11:36:43] 2026-01-15 16:36:10,491 | INFO     | architecture information:
[2026-01-15 11:36:43] 2026-01-15 16:36:10,491 | INFO     | executing command: cat /etc/os-release
[2026-01-15 11:36:43] 2026-01-15 16:36:10,510 | INFO     | cat /etc/os-release:
[2026-01-15 11:36:43] NAME="CentOS Linux"
[2026-01-15 11:36:43] VERSION="7 (Core)"
[2026-01-15 11:36:43] ID="centos"
[2026-01-15 11:36:43] ID_LIKE="rhel fedora"
[2026-01-15 11:36:43] VERSION_ID="7"
[2026-01-15 11:36:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 11:36:43] ANSI_COLOR="0;31"
[2026-01-15 11:36:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 11:36:43] HOME_URL="https://www.centos.org/"
[2026-01-15 11:36:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 11:36:43] 
[2026-01-15 11:36:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 11:36:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 11:36:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 11:36:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 11:36:43] 
[2026-01-15 11:36:43] 2026-01-15 16:36:10,510 | INFO     | ***************************************
[2026-01-15 11:36:43] 2026-01-15 16:36:11,020 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-15 11:36:43] 2026-01-15 16:36:11,084 | INFO     | sufficient remaining disk space (166019989504 B)
[2026-01-15 11:36:43] 2026-01-15 16:36:11,084 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 11:36:43] 2026-01-15 16:36:11,084 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 11:36:43] 2026-01-15 16:36:11,084 | INFO     | update_server=False
[2026-01-15 11:36:43] 2026-01-15 16:36:11,085 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 11:36:43] 2026-01-15 16:36:11,085 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 11:36:43] 2026-01-15 16:36:11,085 | INFO     | aborting loop
[2026-01-15 11:36:43] 2026-01-15 16:36:11,085 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 11:36:43] 2026-01-15 16:36:11,281 | INFO     | all data control threads have been joined
[2026-01-15 11:36:43] 2026-01-15 16:36:11,335 | INFO     | all job control threads have been joined
[2026-01-15 11:36:43] 2026-01-15 16:36:11,676 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 11:36:43] 2026-01-15 16:36:11,733 | INFO     | all payload control threads have been joined
[2026-01-15 11:36:43] 2026-01-15 16:36:12,099 | INFO     | [job] retrieve thread has finished
[2026-01-15 11:36:43] 2026-01-15 16:36:12,100 | INFO     | [job] job monitor thread has finished
[2026-01-15 11:36:43] 2026-01-15 16:36:12,127 | INFO     | [payload] failed_post thread has finished
[2026-01-15 11:36:43] 2026-01-15 16:36:12,287 | INFO     | [data] control thread has finished
[2026-01-15 11:36:43] 2026-01-15 16:36:12,341 | INFO     | [job] control thread has finished
[2026-01-15 11:36:43] 2026-01-15 16:36:12,659 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 11:36:43] 2026-01-15 16:36:12,739 | INFO     | [payload] control thread has finished
[2026-01-15 11:36:43] 2026-01-15 16:36:12,914 | INFO     | [payload] validate_post thread has finished
[2026-01-15 11:36:43] 2026-01-15 16:36:12,942 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 11:36:43] 2026-01-15 16:36:13,009 | INFO     | [data] copytool_in thread has finished
[2026-01-15 11:36:43] 2026-01-15 16:36:13,079 | INFO     | [job] validate thread has finished
[2026-01-15 11:36:43] 2026-01-15 16:36:13,093 | INFO     | [data] copytool_out thread has finished
[2026-01-15 11:36:43] 2026-01-15 16:36:13,163 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 11:36:43] 2026-01-15 16:36:13,701 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 11:36:43] 2026-01-15 16:36:14,707 | INFO     | [job] queue monitor thread has finished
[2026-01-15 11:36:43] 2026-01-15 16:36:15,685 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 11:36:43] 2026-01-15 16:36:17,346 | INFO     | [monitor] cgroup control has ended
[2026-01-15 11:36:43] 2026-01-15 16:36:21,561 | INFO     | job.realtimelogging is not enabled
[2026-01-15 11:36:43] 2026-01-15 16:36:22,569 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 11:36:43] 2026-01-15 16:36:24,641 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139712780044096)>', '<ExcThread(monitor, started 139712425600768)>']
[2026-01-15 11:36:43] 2026-01-15 16:36:29,667 | INFO     | all workflow threads have been joined
[2026-01-15 11:36:43] 2026-01-15 16:36:29,667 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 11:36:43] 2026-01-15 16:36:29,667 | INFO     | traces error code: 0
[2026-01-15 11:36:43] 2026-01-15 16:36:29,667 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 11:36:43] 2026-01-15 16:36:42,277 | INFO     | PID=2902461 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 11:36:43] 2026-01-15 16:36:42,277 | INFO     | .. there are 29 such processes running
[2026-01-15 11:36:43] 2026-01-15 16:36:42,278 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 11:36:43] 2026-01-15 16:36:42,278 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 11:36:43] 2026-01-15 16:36:42,278 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 11:36:43] 2026-01-15 16:36:42,278 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 11:36:43] 2026-01-15 16:36:42,278 | INFO     | [monitor] control thread has ended
[2026-01-15 11:36:43] 2026-01-15 16:36:42,389 [wrapper] ==== pilot stdout END ====
[2026-01-15 11:36:43] 2026-01-15 16:36:42,391 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 11:36:43] 2026-01-15 16:36:42,392 [wrapper] pilotpid: 2902461
[2026-01-15 11:36:43] 2026-01-15 16:36:42,394 [wrapper] Pilot exit status: 0
[2026-01-15 11:36:43] 2026-01-15 16:36:42,442 [wrapper] pandaids: 6970458507
[2026-01-15 11:36:43] 2026-01-15 16:36:42,569 [wrapper] cleanup supervisor_pilot 3350415 2902462
[2026-01-15 11:36:43] 2026-01-15 16:36:42,572 [wrapper] Test setup, not cleaning
[2026-01-15 11:36:43] 2026-01-15 16:36:42,575 [wrapper] apfmon messages muted
[2026-01-15 11:36:43] 2026-01-15 16:36:42,577 [wrapper] ==== wrapper stdout END ====
[2026-01-15 11:36:43] 2026-01-15 16:36:42,583 [wrapper] ==== wrapper stderr END ====
[2026-01-15 11:36:43]  *** Error codes and diagnostics ***
[2026-01-15 11:36:43]     "exeErrorCode": 0,
[2026-01-15 11:36:43]     "exeErrorDiag": "",
[2026-01-15 11:36:43]     "pilotErrorCode": 0,
[2026-01-15 11:36:43]     "pilotErrorDiag": "",
[2026-01-15 11:36:43]  *** Listing of results directory ***
[2026-01-15 11:36:43] total 730092
[2026-01-15 11:36:43] -rw-r--r--. 1 boincer umatlas    579449 Jan 15 03:34 pilot3.tar.gz
[2026-01-15 11:36:43] -rwx------. 1 boincer umatlas     36322 Jan 15 03:37 runpilot2-wrapper.sh
[2026-01-15 11:36:43] -rw-r--r--. 1 boincer umatlas      5112 Jan 15 03:40 queuedata.json
[2026-01-15 11:36:43] -rw-r--r--. 1 boincer umatlas       100 Jan 15 10:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 11:36:43] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 15 10:26 run_atlas
[2026-01-15 11:36:43] -rw-r--r--. 1 boincer umatlas       105 Jan 15 10:26 job.xml
[2026-01-15 11:36:43] -rw-r--r--. 2 boincer umatlas 591888166 Jan 15 10:26 EVNT.32794306._001931.pool.root.1
[2026-01-15 11:36:43] -rw-r--r--. 2 boincer umatlas     15847 Jan 15 10:26 start_atlas.sh
[2026-01-15 11:36:43] drwxrwx--x. 2 boincer umatlas      4096 Jan 15 10:26 shared
[2026-01-15 11:36:43] -rw-r--r--. 2 boincer umatlas    592403 Jan 15 10:26 input.tar.gz
[2026-01-15 11:36:43] -rw-r--r--. 1 boincer umatlas         0 Jan 15 10:26 boinc_lockfile
[2026-01-15 11:36:43] -rw-r--r--. 1 boincer umatlas      2509 Jan 15 10:26 pandaJob.out
[2026-01-15 11:36:43] -rw-------. 1 boincer umatlas        57 Jan 15 10:26 setup.sh.local
[2026-01-15 11:36:43] -rw-------. 1 boincer umatlas   1004083 Jan 15 10:27 agis_schedconf.cvmfs.json
[2026-01-15 11:36:43] -rw-------. 1 boincer umatlas   1516246 Jan 15 10:27 agis_ddmendpoints.agis.ALL.json
[2026-01-15 11:36:43] drwx------. 5 boincer umatlas      4096 Jan 15 10:27 pilot3
[2026-01-15 11:36:43] -rw-r--r--. 1 boincer umatlas      7172 Jan 15 11:27 init_data.xml
[2026-01-15 11:36:43] -rw-------. 1 boincer umatlas 149906031 Jan 15 11:35 HITS.48215263._049732.pool.root.1
[2026-01-15 11:36:43] -rw-r--r--. 1 boincer umatlas       530 Jan 15 11:35 boinc_task_state.xml
[2026-01-15 11:36:43] -rw-------. 1 boincer umatlas      1061 Jan 15 11:35 memory_monitor_summary.json
[2026-01-15 11:36:43] -rw-------. 1 boincer umatlas    332055 Jan 15 11:35 log.48215263._049732.job.log.tgz.1
[2026-01-15 11:36:43] -rw-------. 1 boincer umatlas      7797 Jan 15 11:36 heartbeat.json
[2026-01-15 11:36:43] -rw-r--r--. 1 boincer umatlas      8192 Jan 15 11:36 boinc_mmap_file
[2026-01-15 11:36:43] -rw-r--r--. 1 boincer umatlas        27 Jan 15 11:36 wrapper_checkpoint.txt
[2026-01-15 11:36:43] -rw-------. 1 boincer umatlas        95 Jan 15 11:36 pilot_heartbeat.json
[2026-01-15 11:36:43] -rw-------. 1 boincer umatlas       823 Jan 15 11:36 pilotlog.txt
[2026-01-15 11:36:43] -rw-------. 1 boincer umatlas    611728 Jan 15 11:36 log.48215263._049732.job.log.1
[2026-01-15 11:36:43] -rw-------. 1 boincer umatlas       357 Jan 15 11:36 output.list
[2026-01-15 11:36:43] -rw-r--r--. 1 boincer umatlas       620 Jan 15 11:36 runtime_log
[2026-01-15 11:36:43] -rw-------. 1 boincer umatlas    962560 Jan 15 11:36 result.tar.gz
[2026-01-15 11:36:43] -rw-r--r--. 1 boincer umatlas      9337 Jan 15 11:36 runtime_log.err
[2026-01-15 11:36:43] -rw-------. 1 boincer umatlas       655 Jan 15 11:36 8TOODmk2X08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmEsuKDm4CTlfn.diag
[2026-01-15 11:36:43] -rw-r--r--. 1 boincer umatlas     22295 Jan 15 11:36 stderr.txt
[2026-01-15 11:36:43] HITS file was successfully produced:
[2026-01-15 11:36:43] -rw-------. 1 boincer umatlas 149906031 Jan 15 11:35 shared/HITS.pool.root.1
[2026-01-15 11:36:43]  *** Contents of shared directory: ***
[2026-01-15 11:36:43] total 725956
[2026-01-15 11:36:43] -rw-r--r--. 2 boincer umatlas 591888166 Jan 15 10:26 ATLAS.root_0
[2026-01-15 11:36:43] -rw-r--r--. 2 boincer umatlas     15847 Jan 15 10:26 start_atlas.sh
[2026-01-15 11:36:43] -rw-r--r--. 2 boincer umatlas    592403 Jan 15 10:26 input.tar.gz
[2026-01-15 11:36:43] -rw-------. 1 boincer umatlas 149906031 Jan 15 11:35 HITS.pool.root.1
[2026-01-15 11:36:43] -rw-------. 1 boincer umatlas    962560 Jan 15 11:36 result.tar.gz
11:36:44 (2893068): run_atlas exited; CPU time 15607.046428
11:36:44 (2893068): called boinc_finish(0)

</stderr_txt>
]]>

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