Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:13:18 (2485583): wrapper (7.7.26015): starting
10:13:18 (2485583): wrapper: running run_atlas (--nthreads 9)
[2026-01-15 10:13:18] Arguments: --nthreads 9
[2026-01-15 10:13:18] Threads: 9
[2026-01-15 10:13:18] Checking for CVMFS
[2026-01-15 10:13:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 10:13:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 10:13:18] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 10:13:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 10:13:19] 2.13.3.0 7405 31682 195136 155176 3 166 33602654 40960000 24826 16776704 0 128345376 99.725 97448580 36445 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-15 10:13:19] CVMFS is ok
[2026-01-15 10:13:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 10:13:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 10:13:19] Further information can be found at the LHC@home message board.
[2026-01-15 10:13:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 10:13:19] Checking for apptainer binary...
[2026-01-15 10:13:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 10:13:19] Running /usr/bin/apptainer --version
[2026-01-15 10:13:19] apptainer version 1.4.5-2.el9
[2026-01-15 10:13:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 10:13:19] c-212-3.aglt2.org
[2026-01-15 10:13:19] apptainer works
[2026-01-15 10:13:19] Set ATHENA_PROC_NUMBER=9
[2026-01-15 10:13:19] Set ATHENA_CORE_NUMBER=9
[2026-01-15 10:13:19] Starting ATLAS job with PandaID=6970539354
[2026-01-15 10:13:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 11:55:06]  *** The last 200 lines of the pilot log: ***
[2026-01-15 11:55:06]  status_code=0
[2026-01-15 11:55:06]  storage_token=
[2026-01-15 11:55:06]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6970539354/log.48215263._050964.job.log.tgz.1
[2026-01-15 11:55:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cd/89/log.48215263._050964.job.log.tgz.1
[2026-01-15 11:55:06]  workdir=None
[2026-01-15 11:55:06] ]
[2026-01-15 11:55:06] 2026-01-15 16:54:23,826 | INFO     | transferring file log.48215263._050964.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6970539354/log.48215263._050964.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-15 11:55:06] 2026-01-15 16:54:23,826 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6970539354/log.48215263._050964.job.log.tgz.1 /tmp/boinchome/slots/2/log.48215263._050964.job
[2026-01-15 11:55:06] 2026-01-15 16:54:23,854 | INFO     | adding to output.list: log.48215263._050964.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cd/89/log.48215263._050964.job.log.tg
[2026-01-15 11:55:06] 2026-01-15 16:54:23,855 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-15 11:55:06] 2026-01-15 16:54:23,855 | INFO     | summary of transferred files:
[2026-01-15 11:55:06] 2026-01-15 16:54:23,856 | INFO     |  -- lfn=log.48215263._050964.job.log.tgz.1, status_code=0, status=transferred
[2026-01-15 11:55:06] 2026-01-15 16:54:23,856 | INFO     | stage-out finished correctly
[2026-01-15 11:55:06] 2026-01-15 16:54:23,942 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-15 11:55:06] 2026-01-15 16:54:24,705 | INFO     | time since job start (6049s) is within the limit (349056.0s)
[2026-01-15 11:55:06] 2026-01-15 16:54:26,556 | INFO     | job 6970539354 has state=finished
[2026-01-15 11:55:06] 2026-01-15 16:54:26,557 | INFO     | preparing for final server update for job 6970539354 in state='finished'
[2026-01-15 11:55:06] 2026-01-15 16:54:26,629 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-01-15 11:55:06] 2026-01-15 16:54:26,629 | INFO     | this job has now completed (state=finished)
[2026-01-15 11:55:06] 2026-01-15 16:54:26,629 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-15 11:55:06] 2026-01-15 16:54:26,629 | INFO     | log transfer has been attempted: DONE
[2026-01-15 11:55:06] 2026-01-15 16:54:26,630 | INFO     | job 6970539354 has finished - writing final server update
[2026-01-15 11:55:06] 2026-01-15 16:54:26,630 | INFO     | total number of processed events: 400 (read)
[2026-01-15 11:55:06] 2026-01-15 16:54:26,631 | INFO     | executing command: lscpu
[2026-01-15 11:55:06] 2026-01-15 16:54:26,702 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-15 11:55:06] 2026-01-15 16:54:26,712 | INFO     | time since job start (6051s) is within the limit (349056.0s)
[2026-01-15 11:55:06] 2026-01-15 16:54:27,617 | WARNING  | process 2499204 can no longer be monitored (due to stat problems) - aborting
[2026-01-15 11:55:06] 2026-01-15 16:54:27,617 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6970539354/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 11:55:06] 2026-01-15 16:54:28,118 | INFO     | number of running child processes to parent process 2499204: 1
[2026-01-15 11:55:06] 2026-01-15 16:54:28,118 | INFO     | maximum number of monitored processes: 6
[2026-01-15 11:55:06] 2026-01-15 16:54:28,718 | INFO     | time since job start (6053s) is within the limit (349056.0s)
[2026-01-15 11:55:06] 2026-01-15 16:54:30,622 | INFO     | monitor loop #394: job 0:6970539354 is in state 'finished'
[2026-01-15 11:55:06] 2026-01-15 16:54:30,623 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 11:55:06] 2026-01-15 16:54:30,724 | INFO     | time since job start (6055s) is within the limit (349056.0s)
[2026-01-15 11:55:06] 2026-01-15 16:54:32,731 | INFO     | time since job start (6057s) is within the limit (349056.0s)
[2026-01-15 11:55:06] 2026-01-15 16:54:32,786 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-15 11:55:06] 2026-01-15 16:54:32,791 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2998.6798125
[2026-01-15 11:55:06] 2026-01-15 16:54:32,806 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6970539354/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 11:55:06] 2026-01-15 16:54:32,807 | INFO     | extracted standard info from prmon json
[2026-01-15 11:55:06] 2026-01-15 16:54:32,807 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 11:55:06] 2026-01-15 16:54:32,807 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 11:55:06] 2026-01-15 16:54:32,807 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 11:55:06] 2026-01-15 16:54:32,808 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 11:55:06] 2026-01-15 16:54:32,809 | INFO     | fitting pss+swap vs Time
[2026-01-15 11:55:06] 2026-01-15 16:54:32,810 | INFO     | sum of square deviations: 241429643.0
[2026-01-15 11:55:06] 2026-01-15 16:54:32,810 | INFO     | sum of deviations: -3411274817.9999995
[2026-01-15 11:55:06] 2026-01-15 16:54:32,810 | INFO     | mean x: 1768493129.5
[2026-01-15 11:55:06] 2026-01-15 16:54:32,810 | INFO     | mean y: 2637032.695652174
[2026-01-15 11:55:06] 2026-01-15 16:54:32,811 | INFO     | intersect: 24990521716.223774
[2026-01-15 11:55:06] 2026-01-15 16:54:32,811 | INFO     | chi2: 0.003517176944854713
[2026-01-15 11:55:06] 2026-01-15 16:54:32,811 | INFO     | current memory leak: -14.13 B/s (using 92 data points, chi2=0.00)
[2026-01-15 11:55:06] 2026-01-15 16:54:32,811 | INFO     | could have reported an average CPU frequency of 3040 MHz (7 samples)
[2026-01-15 11:55:06] 2026-01-15 16:54:32,811 | INFO     | ..............................
[2026-01-15 11:55:06] 2026-01-15 16:54:32,811 | INFO     | . Timing measurements:
[2026-01-15 11:55:06] 2026-01-15 16:54:32,812 | INFO     | . get job = 0 s
[2026-01-15 11:55:06] 2026-01-15 16:54:32,812 | INFO     | . initial setup = 2 s
[2026-01-15 11:55:06] 2026-01-15 16:54:32,812 | INFO     | . payload setup = 8 s
[2026-01-15 11:55:06] 2026-01-15 16:54:32,812 | INFO     | . stage-in = 0 s
[2026-01-15 11:55:06] 2026-01-15 16:54:32,812 | INFO     | . payload execution = 6016 s
[2026-01-15 11:55:06] 2026-01-15 16:54:32,812 | INFO     | . stage-out = 0 s
[2026-01-15 11:55:06] 2026-01-15 16:54:32,812 | INFO     | . log creation = 0 s
[2026-01-15 11:55:06] 2026-01-15 16:54:32,812 | INFO     | ..............................
[2026-01-15 11:55:06] 2026-01-15 16:54:32,895 | INFO     | 
[2026-01-15 11:55:06] 2026-01-15 16:54:32,896 | INFO     | job summary report
[2026-01-15 11:55:06] 2026-01-15 16:54:32,896 | INFO     | --------------------------------------------------
[2026-01-15 11:55:06] 2026-01-15 16:54:32,896 | INFO     | PanDA job id: 6970539354
[2026-01-15 11:55:06] 2026-01-15 16:54:32,896 | INFO     | task id: 48215263
[2026-01-15 11:55:06] 2026-01-15 16:54:32,896 | INFO     | errors: (none)
[2026-01-15 11:55:06] 2026-01-15 16:54:32,896 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-15 11:55:06] 2026-01-15 16:54:32,896 | INFO     | pilot state: finished 
[2026-01-15 11:55:06] 2026-01-15 16:54:32,896 | INFO     | transexitcode: 0
[2026-01-15 11:55:06] 2026-01-15 16:54:32,897 | INFO     | exeerrorcode: 0
[2026-01-15 11:55:06] 2026-01-15 16:54:32,897 | INFO     | exeerrordiag: 
[2026-01-15 11:55:06] 2026-01-15 16:54:32,897 | INFO     | exitcode: 0
[2026-01-15 11:55:06] 2026-01-15 16:54:32,897 | INFO     | exitmsg: OK
[2026-01-15 11:55:06] 2026-01-15 16:54:32,897 | INFO     | cpuconsumptiontime: 24173 s
[2026-01-15 11:55:06] 2026-01-15 16:54:32,897 | INFO     | nevents: 400
[2026-01-15 11:55:06] 2026-01-15 16:54:32,897 | INFO     | neventsw: 0
[2026-01-15 11:55:06] 2026-01-15 16:54:32,897 | INFO     | pid: 2499204
[2026-01-15 11:55:06] 2026-01-15 16:54:32,897 | INFO     | pgrp: 2499204
[2026-01-15 11:55:06] 2026-01-15 16:54:32,897 | INFO     | corecount: 9
[2026-01-15 11:55:06] 2026-01-15 16:54:32,897 | INFO     | event service: False
[2026-01-15 11:55:06] 2026-01-15 16:54:32,897 | INFO     | sizes: {0: 2283952, 6: 2284214, 11: 2284242, 6029: 2311030, 6031: 2320084, 6040: 2320222}
[2026-01-15 11:55:06] 2026-01-15 16:54:32,897 | INFO     | --------------------------------------------------
[2026-01-15 11:55:06] 2026-01-15 16:54:32,898 | INFO     | 
[2026-01-15 11:55:06] 2026-01-15 16:54:32,898 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-15 11:55:06] 2026-01-15 16:54:32,921 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 11:55:06] 2026-01-15 16:54:32,921 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 11:55:06] 2026-01-15 16:54:32,921 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 11:55:06] 2026-01-15 16:54:32,921 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 11:55:06] 2026-01-15 16:54:32,921 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 11:55:06] 2026-01-15 16:54:32,921 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 11:55:06] 2026-01-15 16:54:32,921 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 11:55:06] 2026-01-15 16:54:32,922 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 11:55:06] 2026-01-15 16:54:32,922 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 11:55:06] 2026-01-15 16:54:32,922 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 11:55:06] 2026-01-15 16:54:32,922 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 11:55:06] 2026-01-15 16:54:32,922 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 11:55:06] 2026-01-15 16:54:32,922 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 11:55:06] 2026-01-15 16:54:32,922 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 11:55:06] 2026-01-15 16:54:32,922 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 11:55:06] 2026-01-15 16:54:32,922 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 11:55:06] 2026-01-15 16:54:32,922 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 11:55:06] 2026-01-15 16:54:32,922 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 11:55:06] 2026-01-15 16:54:32,922 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 11:55:06] 2026-01-15 16:54:32,922 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 11:55:06] 2026-01-15 16:54:32,923 | INFO     | job 6970539354 has completed (purged errors)
[2026-01-15 11:55:06] 2026-01-15 16:54:32,923 | INFO     | overall cleanup function is called
[2026-01-15 11:55:06] 2026-01-15 16:54:33,932 | INFO     | --- collectZombieJob: --- 10, [2499204]
[2026-01-15 11:55:06] 2026-01-15 16:54:33,932 | INFO     | zombie collector waiting for pid 2499204
[2026-01-15 11:55:06] 2026-01-15 16:54:33,933 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 11:55:06] 2026-01-15 16:54:33,933 | INFO     | collected zombie processes
[2026-01-15 11:55:06] 2026-01-15 16:54:33,933 | INFO     | will attempt to kill all subprocesses of pid=2499204
[2026-01-15 11:55:06] 2026-01-15 16:54:34,406 | INFO     | process IDs to be killed: [2499204] (in reverse order)
[2026-01-15 11:55:06] 2026-01-15 16:54:34,564 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 11:55:06] 2026-01-15 16:54:34,565 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 11:55:06] 2026-01-15 16:54:34,585 | INFO     | did not find any defunct processes belonging to 2499204
[2026-01-15 11:55:06] 2026-01-15 16:54:34,605 | INFO     | did not find any defunct processes belonging to 2499204
[2026-01-15 11:55:06] 2026-01-15 16:54:34,605 | INFO     | ready for new job
[2026-01-15 11:55:06] 2026-01-15 16:54:34,605 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 11:55:06] 2026-01-15 16:54:34,607 | INFO     | ***************************************
[2026-01-15 11:55:06] 2026-01-15 16:54:34,608 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 11:55:06] 2026-01-15 16:54:34,608 | INFO     | ***************************************
[2026-01-15 11:55:06] 2026-01-15 16:54:34,608 | INFO     | 
[2026-01-15 11:55:06] 2026-01-15 16:54:34,613 | INFO     | architecture information:
[2026-01-15 11:55:06] 2026-01-15 16:54:34,614 | INFO     | executing command: cat /etc/os-release
[2026-01-15 11:55:06] 2026-01-15 16:54:34,633 | INFO     | cat /etc/os-release:
[2026-01-15 11:55:06] NAME="CentOS Linux"
[2026-01-15 11:55:06] VERSION="7 (Core)"
[2026-01-15 11:55:06] ID="centos"
[2026-01-15 11:55:06] ID_LIKE="rhel fedora"
[2026-01-15 11:55:06] VERSION_ID="7"
[2026-01-15 11:55:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 11:55:06] ANSI_COLOR="0;31"
[2026-01-15 11:55:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 11:55:06] HOME_URL="https://www.centos.org/"
[2026-01-15 11:55:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 11:55:06] 
[2026-01-15 11:55:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 11:55:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 11:55:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 11:55:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 11:55:06] 
[2026-01-15 11:55:06] 2026-01-15 16:54:34,633 | INFO     | ***************************************
[2026-01-15 11:55:06] 2026-01-15 16:54:35,137 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-15 11:55:06] 2026-01-15 16:54:35,160 | INFO     | sufficient remaining disk space (124714483712 B)
[2026-01-15 11:55:06] 2026-01-15 16:54:35,161 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 11:55:06] 2026-01-15 16:54:35,161 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 11:55:06] 2026-01-15 16:54:35,161 | INFO     | update_server=False
[2026-01-15 11:55:06] 2026-01-15 16:54:35,161 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 11:55:06] 2026-01-15 16:54:35,162 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 11:55:06] 2026-01-15 16:54:35,162 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 11:55:06] 2026-01-15 16:54:35,651 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-15 11:55:06] 2026-01-15 16:54:35,652 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-15 11:55:06] 2026-01-15 16:54:35,652 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 11:55:06] 2026-01-15 16:54:35,652 | INFO     | will abort loop
[2026-01-15 11:55:06] 2026-01-15 16:54:35,947 | INFO     | all job control threads have been joined
[2026-01-15 11:55:06] 2026-01-15 16:54:36,163 | INFO     | all data control threads have been joined
[2026-01-15 11:55:06] 2026-01-15 16:54:36,167 | INFO     | [job] retrieve thread has finished
[2026-01-15 11:55:06] 2026-01-15 16:54:36,393 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 11:55:06] 2026-01-15 16:54:36,545 | INFO     | all payload control threads have been joined
[2026-01-15 11:55:06] 2026-01-15 16:54:36,584 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 11:55:06] 2026-01-15 16:54:36,657 | INFO     | [job] job monitor thread has finished
[2026-01-15 11:55:06] 2026-01-15 16:54:36,696 | INFO     | [payload] failed_post thread has finished
[2026-01-15 11:55:06] 2026-01-15 16:54:36,953 | INFO     | [job] control thread has finished
[2026-01-15 11:55:06] 2026-01-15 16:54:37,169 | INFO     | [data] control thread has finished
[2026-01-15 11:55:06] 2026-01-15 16:54:37,170 | INFO     | [data] copytool_out thread has finished
[2026-01-15 11:55:06] 2026-01-15 16:54:37,354 | INFO     | [job] validate thread has finished
[2026-01-15 11:55:06] 2026-01-15 16:54:37,385 | INFO     | [payload] validate_post thread has finished
[2026-01-15 11:55:06] 2026-01-15 16:54:37,545 | INFO     | [payload] control thread has finished
[2026-01-15 11:55:06] 2026-01-15 16:54:37,641 | INFO     | [data] copytool_in thread has finished
[2026-01-15 11:55:06] 2026-01-15 16:54:37,659 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 11:55:06] 2026-01-15 16:54:37,901 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 11:55:06] 2026-01-15 16:54:38,907 | INFO     | [job] queue monitor thread has finished
[2026-01-15 11:55:06] 2026-01-15 16:54:39,169 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 11:55:06] 2026-01-15 16:54:45,163 | INFO     | [monitor] cgroup control has ended
[2026-01-15 11:55:06] 2026-01-15 16:54:46,014 | INFO     | job.realtimelogging is not enabled
[2026-01-15 11:55:06] 2026-01-15 16:54:47,020 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 11:55:06] 2026-01-15 16:54:48,335 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140517621172032)>', '<ExcThread(monitor, started 140517270599424)>']
[2026-01-15 11:55:06] 2026-01-15 16:54:53,360 | INFO     | all workflow threads have been joined
[2026-01-15 11:55:06] 2026-01-15 16:54:53,361 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 11:55:06] 2026-01-15 16:54:53,361 | INFO     | traces error code: 0
[2026-01-15 11:55:06] 2026-01-15 16:54:53,361 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 11:55:06] 2026-01-15 16:55:06,389 | INFO     | PID=2489330 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 11:55:06] 2026-01-15 16:55:06,390 | INFO     | .. there are 22 such processes running
[2026-01-15 11:55:06] 2026-01-15 16:55:06,390 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 11:55:06] 2026-01-15 16:55:06,390 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 11:55:06] 2026-01-15 16:55:06,390 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 11:55:06] 2026-01-15 16:55:06,390 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 11:55:06] 2026-01-15 16:55:06,390 | INFO     | [monitor] control thread has ended
[2026-01-15 11:55:06] 2026-01-15 16:55:06,554 [wrapper] ==== pilot stdout END ====
[2026-01-15 11:55:06] 2026-01-15 16:55:06,565 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 11:55:06] 2026-01-15 16:55:06,572 [wrapper] pilotpid: 2489330
[2026-01-15 11:55:06] 2026-01-15 16:55:06,582 [wrapper] Pilot exit status: 0
[2026-01-15 11:55:06] 2026-01-15 16:55:06,610 [wrapper] pandaids: 6970539354
[2026-01-15 11:55:06] 2026-01-15 16:55:06,736 [wrapper] cleanup supervisor_pilot 2744609 2489331
[2026-01-15 11:55:06] 2026-01-15 16:55:06,742 [wrapper] Test setup, not cleaning
[2026-01-15 11:55:06] 2026-01-15 16:55:06,747 [wrapper] apfmon messages muted
[2026-01-15 11:55:06] 2026-01-15 16:55:06,751 [wrapper] ==== wrapper stdout END ====
[2026-01-15 11:55:06] 2026-01-15 16:55:06,756 [wrapper] ==== wrapper stderr END ====
[2026-01-15 11:55:06]  *** Error codes and diagnostics ***
[2026-01-15 11:55:06]     "exeErrorCode": 0,
[2026-01-15 11:55:06]     "exeErrorDiag": "",
[2026-01-15 11:55:06]     "pilotErrorCode": 0,
[2026-01-15 11:55:06]     "pilotErrorDiag": "",
[2026-01-15 11:55:06]  *** Listing of results directory ***
[2026-01-15 11:55:06] total 742364
[2026-01-15 11:55:06] -rw-r--r--. 1 boincer umatlas    579449 Jan 15 03:34 pilot3.tar.gz
[2026-01-15 11:55:06] -rwx------. 1 boincer umatlas     36322 Jan 15 03:36 runpilot2-wrapper.sh
[2026-01-15 11:55:06] -rw-r--r--. 1 boincer umatlas      5112 Jan 15 03:38 queuedata.json
[2026-01-15 11:55:06] -rw-r--r--. 1 boincer umatlas       100 Jan 15 10:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 11:55:06] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 15 10:13 run_atlas
[2026-01-15 11:55:06] -rw-r--r--. 1 boincer umatlas       105 Jan 15 10:13 job.xml
[2026-01-15 11:55:06] -rw-r--r--. 2 boincer umatlas 597162629 Jan 15 10:13 EVNT.32794306._001980.pool.root.1
[2026-01-15 11:55:06] -rw-r--r--. 2 boincer umatlas     15847 Jan 15 10:13 start_atlas.sh
[2026-01-15 11:55:06] drwxrwx--x. 2 boincer umatlas      4096 Jan 15 10:13 shared
[2026-01-15 11:55:06] -rw-r--r--. 2 boincer umatlas    592398 Jan 15 10:13 input.tar.gz
[2026-01-15 11:55:06] -rw-r--r--. 1 boincer umatlas         0 Jan 15 10:13 boinc_lockfile
[2026-01-15 11:55:06] -rw-r--r--. 1 boincer umatlas      2509 Jan 15 10:13 pandaJob.out
[2026-01-15 11:55:06] -rw-------. 1 boincer umatlas        57 Jan 15 10:13 setup.sh.local
[2026-01-15 11:55:06] -rw-------. 1 boincer umatlas   1004165 Jan 15 10:13 agis_schedconf.cvmfs.json
[2026-01-15 11:55:06] -rw-------. 1 boincer umatlas   1516246 Jan 15 10:13 agis_ddmendpoints.agis.ALL.json
[2026-01-15 11:55:06] drwx------. 5 boincer umatlas      4096 Jan 15 10:13 pilot3
[2026-01-15 11:55:06] -rw-r--r--. 1 boincer umatlas      6956 Jan 15 11:49 init_data.xml
[2026-01-15 11:55:06] -rw-------. 1 boincer umatlas 156707047 Jan 15 11:53 HITS.48215263._050964.pool.root.1
[2026-01-15 11:55:06] -rw-r--r--. 1 boincer umatlas       530 Jan 15 11:53 boinc_task_state.xml
[2026-01-15 11:55:06] -rw-------. 1 boincer umatlas      1041 Jan 15 11:54 memory_monitor_summary.json
[2026-01-15 11:55:06] -rw-------. 1 boincer umatlas    361104 Jan 15 11:54 log.48215263._050964.job.log.tgz.1
[2026-01-15 11:55:06] -rw-------. 1 boincer umatlas        95 Jan 15 11:54 pilot_heartbeat.json
[2026-01-15 11:55:06] -rw-------. 1 boincer umatlas      7788 Jan 15 11:54 heartbeat.json
[2026-01-15 11:55:06] -rw-r--r--. 1 boincer umatlas      8192 Jan 15 11:55 boinc_mmap_file
[2026-01-15 11:55:06] -rw-r--r--. 1 boincer umatlas        27 Jan 15 11:55 wrapper_checkpoint.txt
[2026-01-15 11:55:06] -rw-------. 1 boincer umatlas       823 Jan 15 11:55 pilotlog.txt
[2026-01-15 11:55:06] -rw-------. 1 boincer umatlas    828858 Jan 15 11:55 log.48215263._050964.job.log.1
[2026-01-15 11:55:06] -rw-------. 1 boincer umatlas       357 Jan 15 11:55 output.list
[2026-01-15 11:55:06] -rw-r--r--. 1 boincer umatlas       620 Jan 15 11:55 runtime_log
[2026-01-15 11:55:06] -rw-------. 1 boincer umatlas   1208320 Jan 15 11:55 result.tar.gz
[2026-01-15 11:55:06] -rw-r--r--. 1 boincer umatlas      9337 Jan 15 11:55 runtime_log.err
[2026-01-15 11:55:06] -rw-------. 1 boincer umatlas       654 Jan 15 11:55 k98LDmC1X08n9Rq4apOajLDm4fhM0noT9bVo0NGKDm9XoKDm11DBen.diag
[2026-01-15 11:55:06] -rw-r--r--. 1 boincer umatlas     22110 Jan 15 11:55 stderr.txt
[2026-01-15 11:55:06] HITS file was successfully produced:
[2026-01-15 11:55:06] -rw-------. 1 boincer umatlas 156707047 Jan 15 11:53 shared/HITS.pool.root.1
[2026-01-15 11:55:06]  *** Contents of shared directory: ***
[2026-01-15 11:55:06] total 737988
[2026-01-15 11:55:06] -rw-r--r--. 2 boincer umatlas 597162629 Jan 15 10:13 ATLAS.root_0
[2026-01-15 11:55:06] -rw-r--r--. 2 boincer umatlas     15847 Jan 15 10:13 start_atlas.sh
[2026-01-15 11:55:06] -rw-r--r--. 2 boincer umatlas    592398 Jan 15 10:13 input.tar.gz
[2026-01-15 11:55:06] -rw-------. 1 boincer umatlas 156707047 Jan 15 11:53 HITS.pool.root.1
[2026-01-15 11:55:06] -rw-------. 1 boincer umatlas   1208320 Jan 15 11:55 result.tar.gz
11:55:08 (2485583): run_atlas exited; CPU time 24399.580298
11:55:08 (2485583): called boinc_finish(0)

</stderr_txt>
]]>

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