Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:27:02 (1445336): wrapper (7.7.26015): starting
17:27:02 (1445336): wrapper: running run_atlas (--nthreads 4)
[2026-01-15 17:27:02] Arguments: --nthreads 4
[2026-01-15 17:27:02] Threads: 4
[2026-01-15 17:27:02] Checking for CVMFS
[2026-01-15 17:27:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 17:27:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 17:27:02] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 17:27:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 17:27:02] 2.9.2.0 313005 2416 98220 155179 0 57 21751072 36864001 0 130560 0 3045726 99.993 100315 19269 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-15 17:27:02] CVMFS is ok
[2026-01-15 17:27:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 17:27:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 17:27:02] Further information can be found at the LHC@home message board.
[2026-01-15 17:27:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 17:27:02] Checking for apptainer binary...
[2026-01-15 17:27:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 17:27:02] Running /usr/bin/apptainer --version
[2026-01-15 17:27:02] apptainer version 1.4.1-1.1
[2026-01-15 17:27:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 17:27:02] thA334
[2026-01-15 17:27:02] apptainer works
[2026-01-15 17:27:02] Set ATHENA_PROC_NUMBER=4
[2026-01-15 17:27:02] Set ATHENA_CORE_NUMBER=4
[2026-01-15 17:27:02] Starting ATLAS job with PandaID=6970539365
[2026-01-15 17:27:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 18:14:18]  *** The last 200 lines of the pilot log: ***
[2026-01-15 18:14:18] 2026-01-15 17:13:39,780 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 18:14:18] 2026-01-15 17:13:39,780 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 18:14:18] 2026-01-15 17:13:39,780 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 18:14:18] 2026-01-15 17:13:39,780 | INFO     | job 6970539365 has completed (purged errors)
[2026-01-15 18:14:18] 2026-01-15 17:13:39,780 | INFO     | overall cleanup function is called
[2026-01-15 18:14:18] 2026-01-15 17:13:40,786 | INFO     | --- collectZombieJob: --- 10, [1455695]
[2026-01-15 18:14:18] 2026-01-15 17:13:40,787 | INFO     | zombie collector waiting for pid 1455695
[2026-01-15 18:14:18] 2026-01-15 17:13:40,787 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 18:14:18] 2026-01-15 17:13:40,787 | INFO     | collected zombie processes
[2026-01-15 18:14:18] 2026-01-15 17:13:40,787 | INFO     | will attempt to kill all subprocesses of pid=1455695
[2026-01-15 18:14:18] 2026-01-15 17:13:40,830 | INFO     | process IDs to be killed: [1455695] (in reverse order)
[2026-01-15 18:14:18] 2026-01-15 17:13:40,859 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 18:14:18] 2026-01-15 17:13:40,859 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 18:14:18] 2026-01-15 17:13:40,861 | INFO     | did not find any defunct processes belonging to 1455695
[2026-01-15 18:14:18] 2026-01-15 17:13:40,862 | INFO     | did not find any defunct processes belonging to 1455695
[2026-01-15 18:14:18] 2026-01-15 17:13:40,862 | INFO     | ready for new job
[2026-01-15 18:14:18] 2026-01-15 17:13:40,862 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 18:14:18] 2026-01-15 17:13:40,863 | INFO     | ***************************************
[2026-01-15 18:14:18] 2026-01-15 17:13:40,863 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 18:14:18] 2026-01-15 17:13:40,863 | INFO     | ***************************************
[2026-01-15 18:14:18] 2026-01-15 17:13:40,863 | INFO     | 
[2026-01-15 18:14:18] 2026-01-15 17:13:40,863 | INFO     | architecture information:
[2026-01-15 18:14:18] 2026-01-15 17:13:40,864 | INFO     | executing command: cat /etc/os-release
[2026-01-15 18:14:18] 2026-01-15 17:13:40,875 | INFO     | cat /etc/os-release:
[2026-01-15 18:14:18] NAME="CentOS Linux"
[2026-01-15 18:14:18] VERSION="7 (Core)"
[2026-01-15 18:14:18] ID="centos"
[2026-01-15 18:14:18] ID_LIKE="rhel fedora"
[2026-01-15 18:14:18] VERSION_ID="7"
[2026-01-15 18:14:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 18:14:18] ANSI_COLOR="0;31"
[2026-01-15 18:14:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 18:14:18] HOME_URL="https://www.centos.org/"
[2026-01-15 18:14:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 18:14:18] 
[2026-01-15 18:14:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 18:14:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 18:14:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 18:14:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 18:14:18] 
[2026-01-15 18:14:18] 2026-01-15 17:13:40,875 | INFO     | ***************************************
[2026-01-15 18:14:18] 2026-01-15 17:13:41,378 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-15 18:14:18] 2026-01-15 17:13:41,395 | INFO     | sufficient remaining disk space (237519241216 B)
[2026-01-15 18:14:18] 2026-01-15 17:13:41,396 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 18:14:18] 2026-01-15 17:13:41,396 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 18:14:18] 2026-01-15 17:13:41,396 | INFO     | update_server=False
[2026-01-15 18:14:18] 2026-01-15 17:13:41,396 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 18:14:18] 2026-01-15 17:13:41,597 | INFO     | all job control threads have been joined
[2026-01-15 18:14:18] 2026-01-15 17:13:41,996 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 18:14:18] 2026-01-15 17:13:41,996 | INFO     | aborting loop
[2026-01-15 18:14:18] 2026-01-15 17:13:42,195 | INFO     | all payload control threads have been joined
[2026-01-15 18:14:18] 2026-01-15 17:13:42,211 | INFO     | all data control threads have been joined
[2026-01-15 18:14:18] 2026-01-15 17:13:42,259 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 18:14:18] 2026-01-15 17:13:42,401 | INFO     | [job] retrieve thread has finished
[2026-01-15 18:14:18] 2026-01-15 17:13:42,460 | INFO     | [data] copytool_in thread has finished
[2026-01-15 18:14:18] 2026-01-15 17:13:42,493 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 18:14:18] 2026-01-15 17:13:42,501 | INFO     | [payload] failed_post thread has finished
[2026-01-15 18:14:18] 2026-01-15 17:13:42,603 | INFO     | [job] control thread has finished
[2026-01-15 18:14:18] 2026-01-15 17:13:42,888 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 18:14:18] 2026-01-15 17:13:43,002 | INFO     | [job] job monitor thread has finished
[2026-01-15 18:14:18] 2026-01-15 17:13:43,201 | INFO     | [payload] control thread has finished
[2026-01-15 18:14:18] 2026-01-15 17:13:43,217 | INFO     | [data] control thread has finished
[2026-01-15 18:14:18] 2026-01-15 17:13:43,625 | INFO     | [payload] validate_post thread has finished
[2026-01-15 18:14:18] 2026-01-15 17:13:43,813 | INFO     | [job] validate thread has finished
[2026-01-15 18:14:18] 2026-01-15 17:13:43,900 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 18:14:18] 2026-01-15 17:13:44,265 | INFO     | [data] copytool_out thread has finished
[2026-01-15 18:14:18] 2026-01-15 17:13:44,392 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 18:14:18] 2026-01-15 17:13:44,667 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 18:14:18] 2026-01-15 17:13:45,398 | INFO     | [job] queue monitor thread has finished
[2026-01-15 18:14:18] 2026-01-15 17:13:48,674 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 18:14:18] 2026-01-15 17:13:51,891 | INFO     | job.realtimelogging is not enabled
[2026-01-15 18:14:18] 2026-01-15 17:13:52,897 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 18:14:18] 2026-01-15 17:14:11,029 | INFO     | PID=1449128 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 18:14:18] 2026-01-15 17:14:11,029 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 18:14:18] 2026-01-15 17:14:11,029 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 18:14:18] 2026-01-15 17:14:11,030 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 18:14:18] 2026-01-15 17:14:12,555 | INFO     | [monitor] cgroup control has ended
[2026-01-15 18:14:18] 2026-01-15 17:14:13,175 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140574278944576)>', '<ExcThread(monitor, started 140573801441024)>']
[2026-01-15 18:14:18] 2026-01-15 17:14:14,045 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 18:14:18] 2026-01-15 17:14:14,046 | INFO     | [monitor] control thread has ended
[2026-01-15 18:14:18] 2026-01-15 17:14:18,200 | INFO     | all workflow threads have been joined
[2026-01-15 18:14:18] 2026-01-15 17:14:18,201 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 18:14:18] 2026-01-15 17:14:18,201 | INFO     | traces error code: 0
[2026-01-15 18:14:18] 2026-01-15 17:14:18,201 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 18:14:18] 2026-01-15 17:14:18,266 [wrapper] ==== pilot stdout END ====
[2026-01-15 18:14:18] 2026-01-15 17:14:18,270 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 18:14:18] 2026-01-15 17:14:18,273 [wrapper] pilotpid: 1449128
[2026-01-15 18:14:18] 2026-01-15 17:14:18,276 [wrapper] Pilot exit status: 0
[2026-01-15 18:14:18] 2026-01-15 17:14:18,286 [wrapper] pandaids: 6970539365
[2026-01-15 18:14:18] 2026-01-15 17:14:18,305 [wrapper] cleanup supervisor_pilot 1465067 1449129
[2026-01-15 18:14:18] 2026-01-15 17:14:18,308 [wrapper] Test setup, not cleaning
[2026-01-15 18:14:18] 2026-01-15 17:14:18,311 [wrapper] apfmon messages muted
[2026-01-15 18:14:18] 2026-01-15 17:14:18,314 [wrapper] ==== wrapper stdout END ====
[2026-01-15 18:14:18] 2026-01-15 17:14:18,317 [wrapper] ==== wrapper stderr END ====
[2026-01-15 18:14:18]  *** Error codes and diagnostics ***
[2026-01-15 18:14:18]     "exeErrorCode": 0,
[2026-01-15 18:14:18]     "exeErrorDiag": "",
[2026-01-15 18:14:18]     "pilotErrorCode": 0,
[2026-01-15 18:14:18]     "pilotErrorDiag": "",
[2026-01-15 18:14:18]  *** Listing of results directory ***
[2026-01-15 18:14:18] total 736324
[2026-01-15 18:14:18] -rw-r--r-- 1 boinc boinc    579449 Jan 15 09:34 pilot3.tar.gz
[2026-01-15 18:14:18] -rwx------ 1 boinc boinc     36322 Jan 15 09:36 runpilot2-wrapper.sh
[2026-01-15 18:14:18] -rw-r--r-- 1 boinc boinc      5112 Jan 15 09:38 queuedata.json
[2026-01-15 18:14:18] -rw-r--r-- 1 boinc boinc       100 Jan 15 17:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 18:14:18] -rwxr-xr-x 1 boinc boinc      7986 Jan 15 17:27 run_atlas
[2026-01-15 18:14:18] -rw-r--r-- 1 boinc boinc       105 Jan 15 17:27 job.xml
[2026-01-15 18:14:18] -rw-r--r-- 2 boinc boinc 597162629 Jan 15 17:27 EVNT.32794306._001980.pool.root.1
[2026-01-15 18:14:18] -rw-r--r-- 2 boinc boinc    592404 Jan 15 17:27 input.tar.gz
[2026-01-15 18:14:18] -rw-r--r-- 2 boinc boinc     15847 Jan 15 17:27 start_atlas.sh
[2026-01-15 18:14:18] drwxrwx--x 2 boinc boinc      4096 Jan 15 17:27 shared
[2026-01-15 18:14:18] -rw-r--r-- 1 boinc boinc         0 Jan 15 17:27 boinc_setup_complete
[2026-01-15 18:14:18] -rw-r--r-- 1 boinc boinc      6369 Jan 15 17:27 init_data.xml
[2026-01-15 18:14:18] -rw-r--r-- 1 boinc boinc         0 Jan 15 17:27 boinc_lockfile
[2026-01-15 18:14:18] -rw-r--r-- 1 boinc boinc      2509 Jan 15 17:27 pandaJob.out
[2026-01-15 18:14:18] -rw------- 1 boinc boinc   1004091 Jan 15 17:27 agis_schedconf.cvmfs.json
[2026-01-15 18:14:18] -rw------- 1 boinc boinc   1516246 Jan 15 17:27 agis_ddmendpoints.agis.ALL.json
[2026-01-15 18:14:18] drwx------ 5 boinc boinc      4096 Jan 15 17:27 pilot3
[2026-01-15 18:14:18] -rw------- 1 boinc boinc 151540267 Jan 15 18:13 HITS.48215263._050975.pool.root.1
[2026-01-15 18:14:18] -rw-r--r-- 1 boinc boinc       530 Jan 15 18:13 boinc_task_state.xml
[2026-01-15 18:14:18] -rw------- 1 boinc boinc        95 Jan 15 18:13 pilot_heartbeat.json
[2026-01-15 18:14:18] -rw------- 1 boinc boinc      1014 Jan 15 18:13 memory_monitor_summary.json
[2026-01-15 18:14:18] -rw------- 1 boinc boinc    251798 Jan 15 18:13 log.48215263._050975.job.log.tgz.1
[2026-01-15 18:14:18] -rw------- 1 boinc boinc      7753 Jan 15 18:13 heartbeat.json
[2026-01-15 18:14:18] -rw-r--r-- 1 boinc boinc      8192 Jan 15 18:13 boinc_mmap_file
[2026-01-15 18:14:18] -rw-r--r-- 1 boinc boinc        27 Jan 15 18:13 wrapper_checkpoint.txt
[2026-01-15 18:14:18] -rw------- 1 boinc boinc      4824 Jan 15 18:14 pilotlog.txt
[2026-01-15 18:14:18] -rw------- 1 boinc boinc    433727 Jan 15 18:14 log.48215263._050975.job.log.1
[2026-01-15 18:14:18] -rw------- 1 boinc boinc       357 Jan 15 18:14 output.list
[2026-01-15 18:14:18] -rw-r--r-- 1 boinc boinc       620 Jan 15 18:14 runtime_log
[2026-01-15 18:14:18] -rw------- 1 boinc boinc    706560 Jan 15 18:14 result.tar.gz
[2026-01-15 18:14:18] -rw-r--r-- 1 boinc boinc      8897 Jan 15 18:14 runtime_log.err
[2026-01-15 18:14:18] -rw------- 1 boinc boinc       657 Jan 15 18:14 njKMDmC1X08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmGYoKDm8afZ7m.diag
[2026-01-15 18:14:18] -rw-r--r-- 1 boinc boinc     11205 Jan 15 18:14 stderr.txt
[2026-01-15 18:14:18] HITS file was successfully produced:
[2026-01-15 18:14:18] -rw------- 1 boinc boinc 151540267 Jan 15 18:13 shared/HITS.pool.root.1
[2026-01-15 18:14:18]  *** Contents of shared directory: ***
[2026-01-15 18:14:18] total 732456
[2026-01-15 18:14:18] -rw-r--r-- 2 boinc boinc 597162629 Jan 15 17:27 ATLAS.root_0
[2026-01-15 18:14:18] -rw-r--r-- 2 boinc boinc    592404 Jan 15 17:27 input.tar.gz
[2026-01-15 18:14:18] -rw-r--r-- 2 boinc boinc     15847 Jan 15 17:27 start_atlas.sh
[2026-01-15 18:14:18] -rw------- 1 boinc boinc 151540267 Jan 15 18:13 HITS.pool.root.1
[2026-01-15 18:14:18] -rw------- 1 boinc boinc    706560 Jan 15 18:14 result.tar.gz
18:14:19 (1445336): run_atlas exited; CPU time 10214.724849
18:14:19 (1445336): called boinc_finish(0)

</stderr_txt>
]]>

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