Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:02:09 (2709116): wrapper (7.7.26015): starting
11:02:09 (2709116): wrapper: running run_atlas (--nthreads 9)
[2026-01-15 11:02:09] Arguments: --nthreads 9
[2026-01-15 11:02:09] Threads: 9
[2026-01-15 11:02:09] Checking for CVMFS
[2026-01-15 11:02:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 11:02:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 11:02:09] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 11:02:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 11:02:10] 2.13.3.0 2295398 25734 99120 155177 0 57 34364816 37030913 1832 16776704 0 16200389 99.952 1335475 44530 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-15 11:02:10] CVMFS is ok
[2026-01-15 11:02:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 11:02:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 11:02:10] Further information can be found at the LHC@home message board.
[2026-01-15 11:02:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 11:02:10] Checking for apptainer binary...
[2026-01-15 11:02:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 11:02:10] Running /usr/bin/apptainer --version
[2026-01-15 11:02:10] apptainer version 1.4.5-2.el9
[2026-01-15 11:02:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 11:02:10] c-205-36.aglt2.org
[2026-01-15 11:02:10] apptainer works
[2026-01-15 11:02:10] Set ATHENA_PROC_NUMBER=9
[2026-01-15 11:02:10] Set ATHENA_CORE_NUMBER=9
[2026-01-15 11:02:10] Starting ATLAS job with PandaID=6970569000
[2026-01-15 11:02:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 11:59:41]  *** The last 200 lines of the pilot log: ***
[2026-01-15 11:59:41]  protocol_id=None
[2026-01-15 11:59:41]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-15 11:59:41]  replicas=None
[2026-01-15 11:59:41]  scope=mc23_13p6TeV
[2026-01-15 11:59:41]  status=None
[2026-01-15 11:59:41]  status_code=0
[2026-01-15 11:59:41]  storage_token=
[2026-01-15 11:59:41]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6970569000/log.48215263._051153.job.log.tgz.1
[2026-01-15 11:59:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a1/20/log.48215263._051153.job.log.tgz.1
[2026-01-15 11:59:41]  workdir=None
[2026-01-15 11:59:41] ]
[2026-01-15 11:59:41] 2026-01-15 16:59:05,912 | INFO     | transferring file log.48215263._051153.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6970569000/log.48215263._051153.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-15 11:59:41] 2026-01-15 16:59:05,912 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6970569000/log.48215263._051153.job.log.tgz.1 /tmp/boinchome/slots/2/log.48215263._051153.job
[2026-01-15 11:59:41] 2026-01-15 16:59:05,923 | INFO     | adding to output.list: log.48215263._051153.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a1/20/log.48215263._051153.job.log.tg
[2026-01-15 11:59:41] 2026-01-15 16:59:05,924 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-15 11:59:41] 2026-01-15 16:59:05,924 | INFO     | summary of transferred files:
[2026-01-15 11:59:41] 2026-01-15 16:59:05,924 | INFO     |  -- lfn=log.48215263._051153.job.log.tgz.1, status_code=0, status=transferred
[2026-01-15 11:59:41] 2026-01-15 16:59:05,924 | INFO     | stage-out finished correctly
[2026-01-15 11:59:41] 2026-01-15 16:59:06,430 | INFO     | time since job start (3406s) is within the limit (349056.0s)
[2026-01-15 11:59:41] 2026-01-15 16:59:06,430 | INFO     | 3408s have passed since pilot start - server update state is 'RUNNING'
[2026-01-15 11:59:41] 2026-01-15 16:59:07,203 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-15 11:59:41] 2026-01-15 16:59:07,402 | INFO     | monitor loop #258: job 0:6970569000 is in state 'finished'
[2026-01-15 11:59:41] 2026-01-15 16:59:07,402 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 11:59:41] 2026-01-15 16:59:07,601 | INFO     | job 6970569000 has state=finished
[2026-01-15 11:59:41] 2026-01-15 16:59:07,601 | INFO     | preparing for final server update for job 6970569000 in state='finished'
[2026-01-15 11:59:41] 2026-01-15 16:59:07,602 | INFO     | this job has now completed (state=finished)
[2026-01-15 11:59:41] 2026-01-15 16:59:07,602 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-15 11:59:41] 2026-01-15 16:59:07,602 | INFO     | log transfer has been attempted: DONE
[2026-01-15 11:59:41] 2026-01-15 16:59:07,602 | INFO     | job 6970569000 has finished - writing final server update
[2026-01-15 11:59:41] 2026-01-15 16:59:07,602 | INFO     | total number of processed events: 400 (read)
[2026-01-15 11:59:41] 2026-01-15 16:59:07,603 | INFO     | executing command: lscpu
[2026-01-15 11:59:41] 2026-01-15 16:59:07,626 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-15 11:59:41] 2026-01-15 16:59:08,436 | INFO     | time since job start (3408s) is within the limit (349056.0s)
[2026-01-15 11:59:41] 2026-01-15 16:59:09,905 | INFO     | monitor loop #259: job 0:6970569000 is in state 'finished'
[2026-01-15 11:59:41] 2026-01-15 16:59:09,905 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 11:59:41] 2026-01-15 16:59:10,162 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-15 11:59:41] 2026-01-15 16:59:10,168 | INFO     | found 16 cores (8 cores per socket, 2 sockets) HT, CPU MHz: 2693.7363437500003
[2026-01-15 11:59:41] 2026-01-15 16:59:10,175 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6970569000/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 11:59:41] 2026-01-15 16:59:10,176 | INFO     | extracted standard info from prmon json
[2026-01-15 11:59:41] 2026-01-15 16:59:10,176 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 11:59:41] 2026-01-15 16:59:10,176 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 11:59:41] 2026-01-15 16:59:10,176 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 11:59:41] 2026-01-15 16:59:10,177 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 11:59:41] 2026-01-15 16:59:10,178 | INFO     | fitting pss+swap vs Time
[2026-01-15 11:59:41] 2026-01-15 16:59:10,179 | INFO     | sum of square deviations: 36465800.0
[2026-01-15 11:59:41] 2026-01-15 16:59:10,179 | INFO     | sum of deviations: -2024848213.0
[2026-01-15 11:59:41] 2026-01-15 16:59:10,179 | INFO     | mean x: 1768494733.0
[2026-01-15 11:59:41] 2026-01-15 16:59:10,179 | INFO     | mean y: 2654665.0
[2026-01-15 11:59:41] 2026-01-15 16:59:10,179 | INFO     | intersect: 98202430888.61122
[2026-01-15 11:59:41] 2026-01-15 16:59:10,180 | INFO     | chi2: 0.025490409245869268
[2026-01-15 11:59:41] 2026-01-15 16:59:10,180 | INFO     | current memory leak: -55.53 B/s (using 49 data points, chi2=0.03)
[2026-01-15 11:59:41] 2026-01-15 16:59:10,180 | INFO     | could have reported an average CPU frequency of 2641 MHz (5 samples)
[2026-01-15 11:59:41] 2026-01-15 16:59:10,180 | INFO     | ..............................
[2026-01-15 11:59:41] 2026-01-15 16:59:10,180 | INFO     | . Timing measurements:
[2026-01-15 11:59:41] 2026-01-15 16:59:10,181 | INFO     | . get job = 0 s
[2026-01-15 11:59:41] 2026-01-15 16:59:10,181 | INFO     | . initial setup = 2 s
[2026-01-15 11:59:41] 2026-01-15 16:59:10,181 | INFO     | . payload setup = 4 s
[2026-01-15 11:59:41] 2026-01-15 16:59:10,181 | INFO     | . stage-in = 0 s
[2026-01-15 11:59:41] 2026-01-15 16:59:10,181 | INFO     | . payload execution = 3380 s
[2026-01-15 11:59:41] 2026-01-15 16:59:10,181 | INFO     | . stage-out = 0 s
[2026-01-15 11:59:41] 2026-01-15 16:59:10,181 | INFO     | . log creation = 0 s
[2026-01-15 11:59:41] 2026-01-15 16:59:10,181 | INFO     | ..............................
[2026-01-15 11:59:41] 2026-01-15 16:59:10,258 | INFO     | 
[2026-01-15 11:59:41] 2026-01-15 16:59:10,258 | INFO     | job summary report
[2026-01-15 11:59:41] 2026-01-15 16:59:10,258 | INFO     | --------------------------------------------------
[2026-01-15 11:59:41] 2026-01-15 16:59:10,258 | INFO     | PanDA job id: 6970569000
[2026-01-15 11:59:41] 2026-01-15 16:59:10,258 | INFO     | task id: 48215263
[2026-01-15 11:59:41] 2026-01-15 16:59:10,258 | INFO     | errors: (none)
[2026-01-15 11:59:41] 2026-01-15 16:59:10,258 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-15 11:59:41] 2026-01-15 16:59:10,258 | INFO     | pilot state: finished 
[2026-01-15 11:59:41] 2026-01-15 16:59:10,258 | INFO     | transexitcode: 0
[2026-01-15 11:59:41] 2026-01-15 16:59:10,258 | INFO     | exeerrorcode: 0
[2026-01-15 11:59:41] 2026-01-15 16:59:10,258 | INFO     | exeerrordiag: 
[2026-01-15 11:59:41] 2026-01-15 16:59:10,258 | INFO     | exitcode: 0
[2026-01-15 11:59:41] 2026-01-15 16:59:10,258 | INFO     | exitmsg: OK
[2026-01-15 11:59:41] 2026-01-15 16:59:10,258 | INFO     | cpuconsumptiontime: 28278 s
[2026-01-15 11:59:41] 2026-01-15 16:59:10,259 | INFO     | nevents: 400
[2026-01-15 11:59:41] 2026-01-15 16:59:10,259 | INFO     | neventsw: 0
[2026-01-15 11:59:41] 2026-01-15 16:59:10,259 | INFO     | pid: 2719203
[2026-01-15 11:59:41] 2026-01-15 16:59:10,259 | INFO     | pgrp: 2719203
[2026-01-15 11:59:41] 2026-01-15 16:59:10,259 | INFO     | corecount: 9
[2026-01-15 11:59:41] 2026-01-15 16:59:10,259 | INFO     | event service: False
[2026-01-15 11:59:41] 2026-01-15 16:59:10,259 | INFO     | sizes: {0: 2283946, 4: 2284208, 11: 2284236, 3388: 2309930, 3390: 2318928, 3391: 2318984, 3394: 2319338}
[2026-01-15 11:59:41] 2026-01-15 16:59:10,259 | INFO     | --------------------------------------------------
[2026-01-15 11:59:41] 2026-01-15 16:59:10,259 | INFO     | 
[2026-01-15 11:59:41] 2026-01-15 16:59:10,259 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-15 11:59:41] 2026-01-15 16:59:10,271 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 11:59:41] 2026-01-15 16:59:10,272 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 11:59:41] 2026-01-15 16:59:10,272 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 11:59:41] 2026-01-15 16:59:10,272 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 11:59:41] 2026-01-15 16:59:10,272 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 11:59:41] 2026-01-15 16:59:10,272 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 11:59:41] 2026-01-15 16:59:10,272 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 11:59:41] 2026-01-15 16:59:10,272 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 11:59:41] 2026-01-15 16:59:10,272 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 11:59:41] 2026-01-15 16:59:10,272 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 11:59:41] 2026-01-15 16:59:10,272 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 11:59:41] 2026-01-15 16:59:10,272 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 11:59:41] 2026-01-15 16:59:10,272 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 11:59:41] 2026-01-15 16:59:10,272 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 11:59:41] 2026-01-15 16:59:10,272 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 11:59:41] 2026-01-15 16:59:10,272 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 11:59:41] 2026-01-15 16:59:10,272 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 11:59:41] 2026-01-15 16:59:10,273 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 11:59:41] 2026-01-15 16:59:10,273 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 11:59:41] 2026-01-15 16:59:10,273 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 11:59:41] 2026-01-15 16:59:10,273 | INFO     | job 6970569000 has completed (purged errors)
[2026-01-15 11:59:41] 2026-01-15 16:59:10,273 | INFO     | overall cleanup function is called
[2026-01-15 11:59:41] 2026-01-15 16:59:11,279 | INFO     | --- collectZombieJob: --- 10, [2719203]
[2026-01-15 11:59:41] 2026-01-15 16:59:11,279 | INFO     | zombie collector waiting for pid 2719203
[2026-01-15 11:59:41] 2026-01-15 16:59:11,279 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 11:59:41] 2026-01-15 16:59:11,279 | INFO     | collected zombie processes
[2026-01-15 11:59:41] 2026-01-15 16:59:11,279 | INFO     | will attempt to kill all subprocesses of pid=2719203
[2026-01-15 11:59:41] 2026-01-15 16:59:11,388 | INFO     | process IDs to be killed: [2719203] (in reverse order)
[2026-01-15 11:59:41] 2026-01-15 16:59:11,421 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 11:59:41] 2026-01-15 16:59:11,421 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 11:59:41] 2026-01-15 16:59:11,424 | INFO     | did not find any defunct processes belonging to 2719203
[2026-01-15 11:59:41] 2026-01-15 16:59:11,426 | INFO     | did not find any defunct processes belonging to 2719203
[2026-01-15 11:59:41] 2026-01-15 16:59:11,427 | INFO     | ready for new job
[2026-01-15 11:59:41] 2026-01-15 16:59:11,427 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 11:59:41] 2026-01-15 16:59:11,428 | INFO     | ***************************************
[2026-01-15 11:59:41] 2026-01-15 16:59:11,428 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 11:59:41] 2026-01-15 16:59:11,428 | INFO     | ***************************************
[2026-01-15 11:59:41] 2026-01-15 16:59:11,428 | INFO     | 
[2026-01-15 11:59:41] 2026-01-15 16:59:11,429 | INFO     | architecture information:
[2026-01-15 11:59:41] 2026-01-15 16:59:11,429 | INFO     | executing command: cat /etc/os-release
[2026-01-15 11:59:41] 2026-01-15 16:59:11,436 | INFO     | cat /etc/os-release:
[2026-01-15 11:59:41] NAME="CentOS Linux"
[2026-01-15 11:59:41] VERSION="7 (Core)"
[2026-01-15 11:59:41] ID="centos"
[2026-01-15 11:59:41] ID_LIKE="rhel fedora"
[2026-01-15 11:59:41] VERSION_ID="7"
[2026-01-15 11:59:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 11:59:41] ANSI_COLOR="0;31"
[2026-01-15 11:59:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 11:59:41] HOME_URL="https://www.centos.org/"
[2026-01-15 11:59:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 11:59:41] 
[2026-01-15 11:59:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 11:59:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 11:59:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 11:59:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 11:59:41] 
[2026-01-15 11:59:41] 2026-01-15 16:59:11,437 | INFO     | ***************************************
[2026-01-15 11:59:41] 2026-01-15 16:59:11,940 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-15 11:59:41] 2026-01-15 16:59:11,949 | INFO     | sufficient remaining disk space (40331378688 B)
[2026-01-15 11:59:41] 2026-01-15 16:59:11,949 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 11:59:41] 2026-01-15 16:59:11,949 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 11:59:41] 2026-01-15 16:59:11,949 | INFO     | update_server=False
[2026-01-15 11:59:41] 2026-01-15 16:59:11,950 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 11:59:41] 2026-01-15 16:59:11,950 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 11:59:41] 2026-01-15 16:59:11,950 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 11:59:41] 2026-01-15 16:59:12,408 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-15 11:59:41] 2026-01-15 16:59:12,408 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-15 11:59:41] 2026-01-15 16:59:12,409 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 11:59:41] 2026-01-15 16:59:12,409 | INFO     | will abort loop
[2026-01-15 11:59:41] 2026-01-15 16:59:12,664 | INFO     | all payload control threads have been joined
[2026-01-15 11:59:41] 2026-01-15 16:59:12,761 | INFO     | all job control threads have been joined
[2026-01-15 11:59:41] 2026-01-15 16:59:12,955 | INFO     | [job] retrieve thread has finished
[2026-01-15 11:59:41] 2026-01-15 16:59:12,955 | INFO     | [job] queue monitor thread has finished
[2026-01-15 11:59:41] 2026-01-15 16:59:13,009 | INFO     | all data control threads have been joined
[2026-01-15 11:59:41] 2026-01-15 16:59:13,107 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 11:59:41] 2026-01-15 16:59:13,259 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 11:59:41] 2026-01-15 16:59:13,286 | INFO     | [payload] validate_post thread has finished
[2026-01-15 11:59:41] 2026-01-15 16:59:13,360 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 11:59:41] 2026-01-15 16:59:13,414 | INFO     | [job] job monitor thread has finished
[2026-01-15 11:59:41] 2026-01-15 16:59:13,611 | INFO     | [data] copytool_in thread has finished
[2026-01-15 11:59:41] 2026-01-15 16:59:13,668 | INFO     | [payload] control thread has finished
[2026-01-15 11:59:41] 2026-01-15 16:59:13,767 | INFO     | [job] control thread has finished
[2026-01-15 11:59:41] 2026-01-15 16:59:13,945 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 11:59:41] 2026-01-15 16:59:13,956 | INFO     | [data] copytool_out thread has finished
[2026-01-15 11:59:41] 2026-01-15 16:59:14,015 | INFO     | [data] control thread has finished
[2026-01-15 11:59:41] 2026-01-15 16:59:14,342 | INFO     | [job] validate thread has finished
[2026-01-15 11:59:41] 2026-01-15 16:59:14,343 | INFO     | [payload] failed_post thread has finished
[2026-01-15 11:59:41] 2026-01-15 16:59:17,265 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 11:59:41] 2026-01-15 16:59:22,381 | INFO     | job.realtimelogging is not enabled
[2026-01-15 11:59:41] 2026-01-15 16:59:23,386 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 11:59:41] 2026-01-15 16:59:25,465 | INFO     | [monitor] cgroup control has ended
[2026-01-15 11:59:41] 2026-01-15 16:59:26,290 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140503218284352)>', '<ExcThread(monitor, started 140502582150912)>']
[2026-01-15 11:59:41] 2026-01-15 16:59:31,315 | INFO     | all workflow threads have been joined
[2026-01-15 11:59:41] 2026-01-15 16:59:31,315 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 11:59:41] 2026-01-15 16:59:31,315 | INFO     | traces error code: 0
[2026-01-15 11:59:41] 2026-01-15 16:59:31,315 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 11:59:41] 2026-01-15 16:59:41,647 | INFO     | PID=2712804 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 11:59:41] 2026-01-15 16:59:41,647 | INFO     | .. there are 3 such processes running
[2026-01-15 11:59:41] 2026-01-15 16:59:41,648 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 11:59:41] 2026-01-15 16:59:41,648 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 11:59:41] 2026-01-15 16:59:41,648 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 11:59:41] 2026-01-15 16:59:41,648 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 11:59:41] 2026-01-15 16:59:41,648 | INFO     | [monitor] control thread has ended
[2026-01-15 11:59:41] 2026-01-15 16:59:41,714 [wrapper] ==== pilot stdout END ====
[2026-01-15 11:59:41] 2026-01-15 16:59:41,715 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 11:59:41] 2026-01-15 16:59:41,717 [wrapper] pilotpid: 2712804
[2026-01-15 11:59:41] 2026-01-15 16:59:41,718 [wrapper] Pilot exit status: 0
[2026-01-15 11:59:41] 2026-01-15 16:59:41,725 [wrapper] pandaids: 6970569000
[2026-01-15 11:59:41] 2026-01-15 16:59:41,746 [wrapper] cleanup supervisor_pilot 2774526 2712805
[2026-01-15 11:59:41] 2026-01-15 16:59:41,748 [wrapper] Test setup, not cleaning
[2026-01-15 11:59:41] 2026-01-15 16:59:41,750 [wrapper] apfmon messages muted
[2026-01-15 11:59:41] 2026-01-15 16:59:41,751 [wrapper] ==== wrapper stdout END ====
[2026-01-15 11:59:41] 2026-01-15 16:59:41,753 [wrapper] ==== wrapper stderr END ====
[2026-01-15 11:59:41]  *** Error codes and diagnostics ***
[2026-01-15 11:59:41]     "exeErrorCode": 0,
[2026-01-15 11:59:41]     "exeErrorDiag": "",
[2026-01-15 11:59:41]     "pilotErrorCode": 0,
[2026-01-15 11:59:41]     "pilotErrorDiag": "",
[2026-01-15 11:59:41]  *** Listing of results directory ***
[2026-01-15 11:59:41] total 737404
[2026-01-15 11:59:41] -rw-r--r--. 1 boincer umatlas    579449 Jan 15 03:34 pilot3.tar.gz
[2026-01-15 11:59:41] -rwx------. 1 boincer umatlas     36322 Jan 15 03:36 runpilot2-wrapper.sh
[2026-01-15 11:59:41] -rw-r--r--. 1 boincer umatlas      5112 Jan 15 03:38 queuedata.json
[2026-01-15 11:59:41] -rw-r--r--. 1 boincer umatlas       100 Jan 15 11:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 11:59:41] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 15 11:02 run_atlas
[2026-01-15 11:59:41] -rw-r--r--. 1 boincer umatlas       105 Jan 15 11:02 job.xml
[2026-01-15 11:59:41] -rw-r--r--. 2 boincer umatlas 593418598 Jan 15 11:02 EVNT.32794306._001988.pool.root.1
[2026-01-15 11:59:41] -rw-r--r--. 2 boincer umatlas     15847 Jan 15 11:02 start_atlas.sh
[2026-01-15 11:59:41] drwxrwx--x. 2 boincer umatlas      4096 Jan 15 11:02 shared
[2026-01-15 11:59:41] -rw-r--r--. 2 boincer umatlas    592404 Jan 15 11:02 input.tar.gz
[2026-01-15 11:59:41] -rw-r--r--. 1 boincer umatlas         0 Jan 15 11:02 boinc_lockfile
[2026-01-15 11:59:41] -rw-r--r--. 1 boincer umatlas      2506 Jan 15 11:02 pandaJob.out
[2026-01-15 11:59:41] -rw-------. 1 boincer umatlas   1004083 Jan 15 11:02 agis_schedconf.cvmfs.json
[2026-01-15 11:59:41] -rw-------. 1 boincer umatlas   1516246 Jan 15 11:02 agis_ddmendpoints.agis.ALL.json
[2026-01-15 11:59:41] drwx------. 5 boincer umatlas      4096 Jan 15 11:02 pilot3
[2026-01-15 11:59:41] -rw-r--r--. 1 boincer umatlas      6529 Jan 15 11:58 init_data.xml
[2026-01-15 11:59:41] -rw-------. 1 boincer umatlas 156095959 Jan 15 11:58 HITS.48215263._051153.pool.root.1
[2026-01-15 11:59:41] -rw-r--r--. 1 boincer umatlas       530 Jan 15 11:58 boinc_task_state.xml
[2026-01-15 11:59:41] -rw-------. 1 boincer umatlas      1030 Jan 15 11:59 memory_monitor_summary.json
[2026-01-15 11:59:41] -rw-------. 1 boincer umatlas        95 Jan 15 11:59 pilot_heartbeat.json
[2026-01-15 11:59:41] -rw-------. 1 boincer umatlas    307168 Jan 15 11:59 log.48215263._051153.job.log.tgz.1
[2026-01-15 11:59:41] -rw-------. 1 boincer umatlas      7811 Jan 15 11:59 heartbeat.json
[2026-01-15 11:59:41] -rw-r--r--. 1 boincer umatlas      8192 Jan 15 11:59 boinc_mmap_file
[2026-01-15 11:59:41] -rw-r--r--. 1 boincer umatlas        27 Jan 15 11:59 wrapper_checkpoint.txt
[2026-01-15 11:59:41] -rw-------. 1 boincer umatlas       822 Jan 15 11:59 pilotlog.txt
[2026-01-15 11:59:41] -rw-------. 1 boincer umatlas    522424 Jan 15 11:59 log.48215263._051153.job.log.1
[2026-01-15 11:59:41] -rw-------. 1 boincer umatlas       357 Jan 15 11:59 output.list
[2026-01-15 11:59:41] -rw-r--r--. 1 boincer umatlas       620 Jan 15 11:59 runtime_log
[2026-01-15 11:59:41] -rw-------. 1 boincer umatlas    849920 Jan 15 11:59 result.tar.gz
[2026-01-15 11:59:41] -rw-------. 1 boincer umatlas       651 Jan 15 11:59 SYXNDmM1X08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmJluKDmAqkcHn.diag
[2026-01-15 11:59:41] -rw-r--r--. 1 boincer umatlas      8817 Jan 15 11:59 runtime_log.err
[2026-01-15 11:59:41] -rw-r--r--. 1 boincer umatlas     21802 Jan 15 11:59 stderr.txt
[2026-01-15 11:59:41] HITS file was successfully produced:
[2026-01-15 11:59:41] -rw-------. 1 boincer umatlas 156095959 Jan 15 11:58 shared/HITS.pool.root.1
[2026-01-15 11:59:41]  *** Contents of shared directory: ***
[2026-01-15 11:59:41] total 733388
[2026-01-15 11:59:41] -rw-r--r--. 2 boincer umatlas 593418598 Jan 15 11:02 ATLAS.root_0
[2026-01-15 11:59:41] -rw-r--r--. 2 boincer umatlas     15847 Jan 15 11:02 start_atlas.sh
[2026-01-15 11:59:41] -rw-r--r--. 2 boincer umatlas    592404 Jan 15 11:02 input.tar.gz
[2026-01-15 11:59:41] -rw-------. 1 boincer umatlas 156095959 Jan 15 11:58 HITS.pool.root.1
[2026-01-15 11:59:41] -rw-------. 1 boincer umatlas    849920 Jan 15 11:59 result.tar.gz
11:59:43 (2709116): run_atlas exited; CPU time 28318.350895
11:59:43 (2709116): called boinc_finish(0)

</stderr_txt>
]]>

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