Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:52:46 (3063625): wrapper (7.7.26015): starting
09:52:46 (3063625): wrapper: running run_atlas (--nthreads 10)
[2026-01-15 09:52:46] Arguments: --nthreads 10
[2026-01-15 09:52:46] Threads: 10
[2026-01-15 09:52:46] Checking for CVMFS
[2026-01-15 09:52:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 09:52:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 09:52:46] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 09:52:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 09:52:46] 2.13.3.0 11338 102060 235668 155175 1 591 20081298 32935937 25165 16776704 0 581448954 99.512 761260905 38374 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-15 09:52:46] CVMFS is ok
[2026-01-15 09:52:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 09:52:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 09:52:46] Further information can be found at the LHC@home message board.
[2026-01-15 09:52:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 09:52:46] Checking for apptainer binary...
[2026-01-15 09:52:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 09:52:46] Running /usr/bin/apptainer --version
[2026-01-15 09:52:46] apptainer version 1.4.5-2.el9
[2026-01-15 09:52:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 09:52:46] c7-3-17.aglt2.org
[2026-01-15 09:52:46] apptainer works
[2026-01-15 09:52:46] Set ATHENA_PROC_NUMBER=10
[2026-01-15 09:52:46] Set ATHENA_CORE_NUMBER=10
[2026-01-15 09:52:46] Starting ATLAS job with PandaID=6970537261
[2026-01-15 09:52:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 11:01:12]  *** The last 200 lines of the pilot log: ***
[2026-01-15 11:01:12]  storage_token=
[2026-01-15 11:01:12]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6970537261/log.48215263._050060.job.log.tgz.1
[2026-01-15 11:01:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b8/41/log.48215263._050060.job.log.tgz.1
[2026-01-15 11:01:12]  workdir=None
[2026-01-15 11:01:12] ]
[2026-01-15 11:01:12] 2026-01-15 16:00:14,457 | INFO     | transferring file log.48215263._050060.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6970537261/log.48215263._050060.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-15 11:01:12] 2026-01-15 16:00:14,457 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6970537261/log.48215263._050060.job.log.tgz.1 /tmp/boinchome/slots/3/log.48215263._050060.job
[2026-01-15 11:01:12] 2026-01-15 16:00:14,475 | INFO     | adding to output.list: log.48215263._050060.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b8/41/log.48215263._050060.job.log.tg
[2026-01-15 11:01:12] 2026-01-15 16:00:14,476 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-15 11:01:12] 2026-01-15 16:00:14,476 | INFO     | summary of transferred files:
[2026-01-15 11:01:12] 2026-01-15 16:00:14,476 | INFO     |  -- lfn=log.48215263._050060.job.log.tgz.1, status_code=0, status=transferred
[2026-01-15 11:01:12] 2026-01-15 16:00:14,476 | INFO     | stage-out finished correctly
[2026-01-15 11:01:12] 2026-01-15 16:00:16,945 | INFO     | PID=3069006 has CPU usage=11.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-15 11:01:12] 2026-01-15 16:00:16,945 | INFO     | .. there are 23 such processes running
[2026-01-15 11:01:12] 2026-01-15 16:00:17,613 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-15 11:01:12] 2026-01-15 16:00:17,947 | INFO     | time since job start (4039s) is within the limit (349056.0s)
[2026-01-15 11:01:12] 2026-01-15 16:00:19,961 | INFO     | time since job start (4041s) is within the limit (349056.0s)
[2026-01-15 11:01:12] 2026-01-15 16:00:20,260 | WARNING  | process 3082214 can no longer be monitored (due to stat problems) - aborting
[2026-01-15 11:01:12] 2026-01-15 16:00:20,261 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6970537261/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 11:01:12] 2026-01-15 16:00:20,767 | INFO     | job 6970537261 has state=finished
[2026-01-15 11:01:12] 2026-01-15 16:00:20,768 | INFO     | preparing for final server update for job 6970537261 in state='finished'
[2026-01-15 11:01:12] 2026-01-15 16:00:20,768 | INFO     | this job has now completed (state=finished)
[2026-01-15 11:01:12] 2026-01-15 16:00:20,768 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-15 11:01:12] 2026-01-15 16:00:20,769 | INFO     | log transfer has been attempted: DONE
[2026-01-15 11:01:12] 2026-01-15 16:00:20,769 | INFO     | job 6970537261 has finished - writing final server update
[2026-01-15 11:01:12] 2026-01-15 16:00:20,769 | INFO     | total number of processed events: 400 (read)
[2026-01-15 11:01:12] 2026-01-15 16:00:20,791 | INFO     | executing command: lscpu
[2026-01-15 11:01:12] 2026-01-15 16:00:21,031 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-15 11:01:12] 2026-01-15 16:00:21,983 | INFO     | time since job start (4043s) is within the limit (349056.0s)
[2026-01-15 11:01:12] 2026-01-15 16:00:22,238 | INFO     | number of running child processes to parent process 3082214: 1
[2026-01-15 11:01:12] 2026-01-15 16:00:22,238 | INFO     | maximum number of monitored processes: 6
[2026-01-15 11:01:12] 2026-01-15 16:00:23,989 | INFO     | time since job start (4045s) is within the limit (349056.0s)
[2026-01-15 11:01:12] 2026-01-15 16:00:24,743 | INFO     | monitor loop #283: job 0:6970537261 is in state 'finished'
[2026-01-15 11:01:12] 2026-01-15 16:00:24,744 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 11:01:12] 2026-01-15 16:00:25,996 | INFO     | time since job start (4047s) is within the limit (349056.0s)
[2026-01-15 11:01:12] 2026-01-15 16:00:27,248 | INFO     | monitor loop #284: job 0:6970537261 is in state 'finished'
[2026-01-15 11:01:12] 2026-01-15 16:00:27,249 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 11:01:12] 2026-01-15 16:00:28,003 | INFO     | time since job start (4050s) is within the limit (349056.0s)
[2026-01-15 11:01:12] 2026-01-15 16:00:29,062 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-15 11:01:12] 2026-01-15 16:00:29,097 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2970.663729166668
[2026-01-15 11:01:12] 2026-01-15 16:00:29,189 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6970537261/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 11:01:12] 2026-01-15 16:00:29,190 | INFO     | extracted standard info from prmon json
[2026-01-15 11:01:12] 2026-01-15 16:00:29,190 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 11:01:12] 2026-01-15 16:00:29,191 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 11:01:12] 2026-01-15 16:00:29,191 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 11:01:12] 2026-01-15 16:00:29,191 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 11:01:12] 2026-01-15 16:00:29,192 | INFO     | fitting pss+swap vs Time
[2026-01-15 11:01:12] 2026-01-15 16:00:29,193 | INFO     | sum of square deviations: 63671313.932203375
[2026-01-15 11:01:12] 2026-01-15 16:00:29,193 | INFO     | sum of deviations: 6224183924.491524
[2026-01-15 11:01:12] 2026-01-15 16:00:29,193 | INFO     | mean x: 1768490879.0338984
[2026-01-15 11:01:12] 2026-01-15 16:00:29,193 | INFO     | mean y: 2572731.254237288
[2026-01-15 11:01:12] 2026-01-15 16:00:29,193 | INFO     | intersect: -172876104024.39218
[2026-01-15 11:01:12] 2026-01-15 16:00:29,213 | INFO     | chi2: 0.17081721365245306
[2026-01-15 11:01:12] 2026-01-15 16:00:29,214 | INFO     | current memory leak: 97.75 B/s (using 59 data points, chi2=0.17)
[2026-01-15 11:01:12] 2026-01-15 16:00:29,214 | INFO     | could have reported an average CPU frequency of 3000 MHz (6 samples)
[2026-01-15 11:01:12] 2026-01-15 16:00:29,215 | INFO     | ..............................
[2026-01-15 11:01:12] 2026-01-15 16:00:29,215 | INFO     | . Timing measurements:
[2026-01-15 11:01:12] 2026-01-15 16:00:29,215 | INFO     | . get job = 0 s
[2026-01-15 11:01:12] 2026-01-15 16:00:29,215 | INFO     | . initial setup = 2 s
[2026-01-15 11:01:12] 2026-01-15 16:00:29,215 | INFO     | . payload setup = 6 s
[2026-01-15 11:01:12] 2026-01-15 16:00:29,215 | INFO     | . stage-in = 0 s
[2026-01-15 11:01:12] 2026-01-15 16:00:29,215 | INFO     | . payload execution = 4008 s
[2026-01-15 11:01:12] 2026-01-15 16:00:29,215 | INFO     | . stage-out = 0 s
[2026-01-15 11:01:12] 2026-01-15 16:00:29,215 | INFO     | . log creation = 0 s
[2026-01-15 11:01:12] 2026-01-15 16:00:29,215 | INFO     | ..............................
[2026-01-15 11:01:12] 2026-01-15 16:00:29,369 | INFO     | 
[2026-01-15 11:01:12] 2026-01-15 16:00:29,370 | INFO     | job summary report
[2026-01-15 11:01:12] 2026-01-15 16:00:29,370 | INFO     | --------------------------------------------------
[2026-01-15 11:01:12] 2026-01-15 16:00:29,370 | INFO     | PanDA job id: 6970537261
[2026-01-15 11:01:12] 2026-01-15 16:00:29,370 | INFO     | task id: 48215263
[2026-01-15 11:01:12] 2026-01-15 16:00:29,370 | INFO     | errors: (none)
[2026-01-15 11:01:12] 2026-01-15 16:00:29,370 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-15 11:01:12] 2026-01-15 16:00:29,370 | INFO     | pilot state: finished 
[2026-01-15 11:01:12] 2026-01-15 16:00:29,370 | INFO     | transexitcode: 0
[2026-01-15 11:01:12] 2026-01-15 16:00:29,370 | INFO     | exeerrorcode: 0
[2026-01-15 11:01:12] 2026-01-15 16:00:29,370 | INFO     | exeerrordiag: 
[2026-01-15 11:01:12] 2026-01-15 16:00:29,370 | INFO     | exitcode: 0
[2026-01-15 11:01:12] 2026-01-15 16:00:29,370 | INFO     | exitmsg: OK
[2026-01-15 11:01:12] 2026-01-15 16:00:29,370 | INFO     | cpuconsumptiontime: 22667 s
[2026-01-15 11:01:12] 2026-01-15 16:00:29,370 | INFO     | nevents: 400
[2026-01-15 11:01:12] 2026-01-15 16:00:29,370 | INFO     | neventsw: 0
[2026-01-15 11:01:12] 2026-01-15 16:00:29,371 | INFO     | pid: 3082214
[2026-01-15 11:01:12] 2026-01-15 16:00:29,371 | INFO     | pgrp: 3082214
[2026-01-15 11:01:12] 2026-01-15 16:00:29,371 | INFO     | corecount: 10
[2026-01-15 11:01:12] 2026-01-15 16:00:29,371 | INFO     | event service: False
[2026-01-15 11:01:12] 2026-01-15 16:00:29,371 | INFO     | sizes: {0: 2283900, 5: 2284162, 11: 2284218, 4019: 2310202, 4020: 2310201, 4021: 2319255, 4024: 2319439, 4035: 2319633}
[2026-01-15 11:01:12] 2026-01-15 16:00:29,371 | INFO     | --------------------------------------------------
[2026-01-15 11:01:12] 2026-01-15 16:00:29,371 | INFO     | 
[2026-01-15 11:01:12] 2026-01-15 16:00:29,371 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-15 11:01:12] 2026-01-15 16:00:29,425 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 11:01:12] 2026-01-15 16:00:29,426 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 11:01:12] 2026-01-15 16:00:29,426 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 11:01:12] 2026-01-15 16:00:29,426 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 11:01:12] 2026-01-15 16:00:29,426 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 11:01:12] 2026-01-15 16:00:29,426 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 11:01:12] 2026-01-15 16:00:29,426 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 11:01:12] 2026-01-15 16:00:29,426 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 11:01:12] 2026-01-15 16:00:29,426 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 11:01:12] 2026-01-15 16:00:29,427 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 11:01:12] 2026-01-15 16:00:29,427 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 11:01:12] 2026-01-15 16:00:29,427 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 11:01:12] 2026-01-15 16:00:29,427 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 11:01:12] 2026-01-15 16:00:29,427 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 11:01:12] 2026-01-15 16:00:29,427 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 11:01:12] 2026-01-15 16:00:29,427 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 11:01:12] 2026-01-15 16:00:29,427 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 11:01:12] 2026-01-15 16:00:29,427 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 11:01:12] 2026-01-15 16:00:29,427 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 11:01:12] 2026-01-15 16:00:29,427 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 11:01:12] 2026-01-15 16:00:29,428 | INFO     | job 6970537261 has completed (purged errors)
[2026-01-15 11:01:12] 2026-01-15 16:00:29,428 | INFO     | overall cleanup function is called
[2026-01-15 11:01:12] 2026-01-15 16:00:30,441 | INFO     | --- collectZombieJob: --- 10, [3082214]
[2026-01-15 11:01:12] 2026-01-15 16:00:30,443 | INFO     | zombie collector waiting for pid 3082214
[2026-01-15 11:01:12] 2026-01-15 16:00:30,443 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 11:01:12] 2026-01-15 16:00:30,466 | INFO     | collected zombie processes
[2026-01-15 11:01:12] 2026-01-15 16:00:30,467 | INFO     | will attempt to kill all subprocesses of pid=3082214
[2026-01-15 11:01:12] 2026-01-15 16:00:31,581 | INFO     | process IDs to be killed: [3082214] (in reverse order)
[2026-01-15 11:01:12] 2026-01-15 16:00:31,753 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 11:01:12] 2026-01-15 16:00:31,754 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 11:01:12] 2026-01-15 16:00:31,776 | INFO     | did not find any defunct processes belonging to 3082214
[2026-01-15 11:01:12] 2026-01-15 16:00:31,798 | INFO     | did not find any defunct processes belonging to 3082214
[2026-01-15 11:01:12] 2026-01-15 16:00:31,798 | INFO     | ready for new job
[2026-01-15 11:01:12] 2026-01-15 16:00:31,798 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 11:01:12] 2026-01-15 16:00:31,801 | INFO     | ***************************************
[2026-01-15 11:01:12] 2026-01-15 16:00:31,801 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 11:01:12] 2026-01-15 16:00:31,801 | INFO     | ***************************************
[2026-01-15 11:01:12] 2026-01-15 16:00:31,801 | INFO     | 
[2026-01-15 11:01:12] 2026-01-15 16:00:31,822 | INFO     | architecture information:
[2026-01-15 11:01:12] 2026-01-15 16:00:31,834 | INFO     | executing command: cat /etc/os-release
[2026-01-15 11:01:12] 2026-01-15 16:00:31,915 | INFO     | cat /etc/os-release:
[2026-01-15 11:01:12] NAME="CentOS Linux"
[2026-01-15 11:01:12] VERSION="7 (Core)"
[2026-01-15 11:01:12] ID="centos"
[2026-01-15 11:01:12] ID_LIKE="rhel fedora"
[2026-01-15 11:01:12] VERSION_ID="7"
[2026-01-15 11:01:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 11:01:12] ANSI_COLOR="0;31"
[2026-01-15 11:01:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 11:01:12] HOME_URL="https://www.centos.org/"
[2026-01-15 11:01:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 11:01:12] 
[2026-01-15 11:01:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 11:01:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 11:01:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 11:01:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 11:01:12] 
[2026-01-15 11:01:12] 2026-01-15 16:00:31,915 | INFO     | ***************************************
[2026-01-15 11:01:12] 2026-01-15 16:00:32,419 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-15 11:01:12] 2026-01-15 16:00:32,497 | INFO     | sufficient remaining disk space (69977767936 B)
[2026-01-15 11:01:12] 2026-01-15 16:00:32,497 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 11:01:12] 2026-01-15 16:00:32,497 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 11:01:12] 2026-01-15 16:00:32,497 | INFO     | update_server=False
[2026-01-15 11:01:12] 2026-01-15 16:00:32,497 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 11:01:12] 2026-01-15 16:00:32,637 | INFO     | all job control threads have been joined
[2026-01-15 11:01:12] 2026-01-15 16:00:33,132 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 11:01:12] 2026-01-15 16:00:33,177 | INFO     | all data control threads have been joined
[2026-01-15 11:01:12] 2026-01-15 16:00:33,204 | INFO     | all payload control threads have been joined
[2026-01-15 11:01:12] 2026-01-15 16:00:33,315 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 11:01:12] 2026-01-15 16:00:33,316 | INFO     | aborting loop
[2026-01-15 11:01:12] 2026-01-15 16:00:33,504 | INFO     | [job] retrieve thread has finished
[2026-01-15 11:01:12] 2026-01-15 16:00:33,541 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 11:01:12] 2026-01-15 16:00:33,656 | INFO     | [job] control thread has finished
[2026-01-15 11:01:12] 2026-01-15 16:00:33,707 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 11:01:12] 2026-01-15 16:00:33,772 | INFO     | [data] copytool_in thread has finished
[2026-01-15 11:01:12] 2026-01-15 16:00:34,041 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 11:01:12] 2026-01-15 16:00:34,055 | INFO     | [payload] validate_post thread has finished
[2026-01-15 11:01:12] 2026-01-15 16:00:34,171 | INFO     | [job] validate thread has finished
[2026-01-15 11:01:12] 2026-01-15 16:00:34,185 | INFO     | [data] control thread has finished
[2026-01-15 11:01:12] 2026-01-15 16:00:34,210 | INFO     | [payload] control thread has finished
[2026-01-15 11:01:12] 2026-01-15 16:00:34,321 | INFO     | [job] job monitor thread has finished
[2026-01-15 11:01:12] 2026-01-15 16:00:34,392 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 11:01:12] 2026-01-15 16:00:34,481 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 11:01:12] 2026-01-15 16:00:34,630 | INFO     | [payload] failed_post thread has finished
[2026-01-15 11:01:12] 2026-01-15 16:00:34,867 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 11:01:12] 2026-01-15 16:00:35,139 | INFO     | [data] copytool_out thread has finished
[2026-01-15 11:01:12] 2026-01-15 16:00:35,398 | INFO     | [job] queue monitor thread has finished
[2026-01-15 11:01:12] 2026-01-15 16:00:37,550 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 11:01:12] 2026-01-15 16:01:01,799 | INFO     | PID=3069006 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 11:01:12] 2026-01-15 16:01:01,800 | INFO     | .. there are 23 such processes running
[2026-01-15 11:01:12] 2026-01-15 16:01:01,803 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 11:01:12] 2026-01-15 16:01:01,803 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 11:01:12] 2026-01-15 16:01:01,804 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 11:01:12] 2026-01-15 16:01:04,839 | INFO     | [monitor] cgroup control has ended
[2026-01-15 11:01:12] 2026-01-15 16:01:06,117 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139962571192128)>', '<ExcThread(monitor, started 139961575667456)>']
[2026-01-15 11:01:12] 2026-01-15 16:01:06,829 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 11:01:12] 2026-01-15 16:01:06,830 | INFO     | [monitor] control thread has ended
[2026-01-15 11:01:12] 2026-01-15 16:01:11,146 | INFO     | all workflow threads have been joined
[2026-01-15 11:01:12] 2026-01-15 16:01:11,147 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 11:01:12] 2026-01-15 16:01:11,147 | INFO     | traces error code: 0
[2026-01-15 11:01:12] 2026-01-15 16:01:11,148 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 11:01:12] 2026-01-15 16:01:12,157 [wrapper] ==== pilot stdout END ====
[2026-01-15 11:01:12] 2026-01-15 16:01:12,161 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 11:01:12] 2026-01-15 16:01:12,163 [wrapper] pilotpid: 3069006
[2026-01-15 11:01:12] 2026-01-15 16:01:12,166 [wrapper] Pilot exit status: 0
[2026-01-15 11:01:12] 2026-01-15 16:01:12,180 [wrapper] pandaids: 6970537261
[2026-01-15 11:01:12] 2026-01-15 16:01:12,293 [wrapper] cleanup supervisor_pilot 3484367 3069007
[2026-01-15 11:01:12] 2026-01-15 16:01:12,297 [wrapper] Test setup, not cleaning
[2026-01-15 11:01:12] 2026-01-15 16:01:12,299 [wrapper] apfmon messages muted
[2026-01-15 11:01:12] 2026-01-15 16:01:12,302 [wrapper] ==== wrapper stdout END ====
[2026-01-15 11:01:12] 2026-01-15 16:01:12,304 [wrapper] ==== wrapper stderr END ====
[2026-01-15 11:01:12]  *** Error codes and diagnostics ***
[2026-01-15 11:01:12]     "exeErrorCode": 0,
[2026-01-15 11:01:12]     "exeErrorDiag": "",
[2026-01-15 11:01:12]     "pilotErrorCode": 0,
[2026-01-15 11:01:12]     "pilotErrorDiag": "",
[2026-01-15 11:01:12]  *** Listing of results directory ***
[2026-01-15 11:01:12] total 738460
[2026-01-15 11:01:12] -rw-r--r--. 1 boincer umatlas    579449 Jan 15 03:34 pilot3.tar.gz
[2026-01-15 11:01:12] -rwx------. 1 boincer umatlas     36322 Jan 15 03:35 runpilot2-wrapper.sh
[2026-01-15 11:01:12] -rw-r--r--. 1 boincer umatlas      5112 Jan 15 03:35 queuedata.json
[2026-01-15 11:01:12] -rw-r--r--. 1 boincer umatlas       100 Jan 15 09:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 11:01:12] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 15 09:52 run_atlas
[2026-01-15 11:01:12] -rw-r--r--. 1 boincer umatlas       105 Jan 15 09:52 job.xml
[2026-01-15 11:01:12] -rw-r--r--. 2 boincer umatlas 594589610 Jan 15 09:52 EVNT.32794306._000750.pool.root.1
[2026-01-15 11:01:12] -rw-r--r--. 2 boincer umatlas     15847 Jan 15 09:52 start_atlas.sh
[2026-01-15 11:01:12] drwxrwx--x. 2 boincer umatlas      4096 Jan 15 09:52 shared
[2026-01-15 11:01:12] -rw-r--r--. 2 boincer umatlas    592409 Jan 15 09:52 input.tar.gz
[2026-01-15 11:01:12] -rw-r--r--. 1 boincer umatlas         0 Jan 15 09:52 boinc_lockfile
[2026-01-15 11:01:12] -rw-r--r--. 1 boincer umatlas      2508 Jan 15 09:52 pandaJob.out
[2026-01-15 11:01:12] -rw-------. 1 boincer umatlas        57 Jan 15 09:52 setup.sh.local
[2026-01-15 11:01:12] -rw-------. 1 boincer umatlas   1004165 Jan 15 09:52 agis_schedconf.cvmfs.json
[2026-01-15 11:01:12] -rw-------. 1 boincer umatlas   1516246 Jan 15 09:52 agis_ddmendpoints.agis.ALL.json
[2026-01-15 11:01:12] drwx------. 5 boincer umatlas      4096 Jan 15 09:52 pilot3
[2026-01-15 11:01:12] -rw-r--r--. 1 boincer umatlas      6945 Jan 15 10:54 init_data.xml
[2026-01-15 11:01:12] -rw-------. 1 boincer umatlas 155791203 Jan 15 10:58 HITS.48215263._050060.pool.root.1
[2026-01-15 11:01:12] -rw-r--r--. 1 boincer umatlas       530 Jan 15 10:59 boinc_task_state.xml
[2026-01-15 11:01:12] -rw-------. 1 boincer umatlas      1047 Jan 15 11:00 memory_monitor_summary.json
[2026-01-15 11:01:12] -rw-------. 1 boincer umatlas    341796 Jan 15 11:00 log.48215263._050060.job.log.tgz.1
[2026-01-15 11:01:12] -rw-------. 1 boincer umatlas      7795 Jan 15 11:00 heartbeat.json
[2026-01-15 11:01:12] -rw-------. 1 boincer umatlas        95 Jan 15 11:01 pilot_heartbeat.json
[2026-01-15 11:01:12] -rw-r--r--. 1 boincer umatlas      8192 Jan 15 11:01 boinc_mmap_file
[2026-01-15 11:01:12] -rw-r--r--. 1 boincer umatlas        27 Jan 15 11:01 wrapper_checkpoint.txt
[2026-01-15 11:01:12] -rw-------. 1 boincer umatlas      4824 Jan 15 11:01 pilotlog.txt
[2026-01-15 11:01:12] -rw-------. 1 boincer umatlas    592744 Jan 15 11:01 log.48215263._050060.job.log.1
[2026-01-15 11:01:12] -rw-------. 1 boincer umatlas       357 Jan 15 11:01 output.list
[2026-01-15 11:01:12] -rw-r--r--. 1 boincer umatlas       620 Jan 15 11:01 runtime_log
[2026-01-15 11:01:12] -rw-------. 1 boincer umatlas    952320 Jan 15 11:01 result.tar.gz
[2026-01-15 11:01:12] -rw-------. 1 boincer umatlas       655 Jan 15 11:01 Pb8MDma0X08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmYfuKDmB6bVYn.diag
[2026-01-15 11:01:12] -rw-r--r--. 1 boincer umatlas      9339 Jan 15 11:01 runtime_log.err
[2026-01-15 11:01:12] -rw-r--r--. 1 boincer umatlas     22379 Jan 15 11:01 stderr.txt
[2026-01-15 11:01:12] HITS file was successfully produced:
[2026-01-15 11:01:12] -rw-------. 1 boincer umatlas 155791203 Jan 15 10:58 shared/HITS.pool.root.1
[2026-01-15 11:01:12]  *** Contents of shared directory: ***
[2026-01-15 11:01:12] total 734332
[2026-01-15 11:01:12] -rw-r--r--. 2 boincer umatlas 594589610 Jan 15 09:52 ATLAS.root_0
[2026-01-15 11:01:12] -rw-r--r--. 2 boincer umatlas     15847 Jan 15 09:52 start_atlas.sh
[2026-01-15 11:01:12] -rw-r--r--. 2 boincer umatlas    592409 Jan 15 09:52 input.tar.gz
[2026-01-15 11:01:12] -rw-------. 1 boincer umatlas 155791203 Jan 15 10:58 HITS.pool.root.1
[2026-01-15 11:01:12] -rw-------. 1 boincer umatlas    952320 Jan 15 11:01 result.tar.gz
11:01:14 (3063625): run_atlas exited; CPU time 22819.069202
11:01:14 (3063625): called boinc_finish(0)

</stderr_txt>
]]>

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