Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
14:48:14 (847291): wrapper (7.7.26015): starting
14:48:14 (847291): wrapper: running run_atlas (--nthreads 4)
[2026-01-15 14:48:14] Arguments: --nthreads 4
[2026-01-15 14:48:14] Threads: 4
[2026-01-15 14:48:14] Checking for CVMFS
[2026-01-15 14:48:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 14:48:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 14:48:14] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 14:48:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 14:48:14] 2.13.3.0 3426809 2122 52464 155184 3 61 3626276 6144000 6454 130560 0 13879894 99.998 84098 948 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://192.168.1.30:3128 1
[2026-01-15 14:48:14] CVMFS is ok
[2026-01-15 14:48:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 14:48:14] Checking for apptainer binary...
[2026-01-15 14:48:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 14:48:14] Running /usr/bin/apptainer --version
[2026-01-15 14:48:14] apptainer version 1.4.5
[2026-01-15 14:48:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 14:48:14] Starfish-Cruncher
[2026-01-15 14:48:14] apptainer works
[2026-01-15 14:48:14] Set ATHENA_PROC_NUMBER=4
[2026-01-15 14:48:14] Set ATHENA_CORE_NUMBER=4
[2026-01-15 14:48:14] Starting ATLAS job with PandaID=6970458347
[2026-01-15 14:48:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 16:10:37]  *** The last 200 lines of the pilot log: ***
[2026-01-15 16:10:37] 2026-01-15 22:09:49,950 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/7/PanDA_Pilot-6970458347/log.48215263._049572.job.log.tgz.1 /var/lib/boinc-client/slots/7/log.482152
[2026-01-15 16:10:37] 2026-01-15 22:09:49,979 | INFO     | adding to output.list: log.48215263._049572.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/eb/1d/log.48215263._049572.job.log.tg
[2026-01-15 16:10:37] 2026-01-15 22:09:49,979 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-15 16:10:37] 2026-01-15 22:09:49,979 | INFO     | summary of transferred files:
[2026-01-15 16:10:37] 2026-01-15 22:09:49,979 | INFO     |  -- lfn=log.48215263._049572.job.log.tgz.1, status_code=0, status=transferred
[2026-01-15 16:10:37] 2026-01-15 22:09:49,980 | INFO     | stage-out finished correctly
[2026-01-15 16:10:37] 2026-01-15 22:09:50,189 | WARNING  | process 857996 can no longer be monitored (due to stat problems) - aborting
[2026-01-15 16:10:37] 2026-01-15 22:09:50,190 | INFO     | using path: /var/lib/boinc-client/slots/7/PanDA_Pilot-6970458347/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 16:10:37] 2026-01-15 22:09:50,241 | INFO     | time since job start (4887s) is within the limit (349056.0s)
[2026-01-15 16:10:37] 2026-01-15 22:09:50,354 | INFO     | number of running child processes to parent process 857996: 1
[2026-01-15 16:10:37] 2026-01-15 22:09:50,354 | INFO     | maximum number of monitored processes: 6
[2026-01-15 16:10:37] 2026-01-15 22:09:51,323 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-15 16:10:37] 2026-01-15 22:09:52,246 | INFO     | time since job start (4889s) is within the limit (349056.0s)
[2026-01-15 16:10:37] 2026-01-15 22:09:52,858 | INFO     | job 6970458347 has state=finished
[2026-01-15 16:10:37] 2026-01-15 22:09:52,858 | INFO     | preparing for final server update for job 6970458347 in state='finished'
[2026-01-15 16:10:37] 2026-01-15 22:09:52,863 | INFO     | monitor loop #364: job 0:6970458347 is in state 'finished'
[2026-01-15 16:10:37] 2026-01-15 22:09:52,871 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 16:10:37] 2026-01-15 22:09:53,126 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-01-15 16:10:37] 2026-01-15 22:09:53,126 | INFO     | this job has now completed (state=finished)
[2026-01-15 16:10:37] 2026-01-15 22:09:53,126 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-15 16:10:37] 2026-01-15 22:09:53,126 | INFO     | log transfer has been attempted: DONE
[2026-01-15 16:10:37] 2026-01-15 22:09:53,126 | INFO     | job 6970458347 has finished - writing final server update
[2026-01-15 16:10:37] 2026-01-15 22:09:53,126 | INFO     | total number of processed events: 400 (read)
[2026-01-15 16:10:37] 2026-01-15 22:09:53,127 | INFO     | executing command: lscpu
[2026-01-15 16:10:37] 2026-01-15 22:09:53,156 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-15 16:10:37] 2026-01-15 22:09:54,251 | INFO     | time since job start (4891s) is within the limit (349056.0s)
[2026-01-15 16:10:37] 2026-01-15 22:09:55,374 | INFO     | monitor loop #365: job 0:6970458347 is in state 'finished'
[2026-01-15 16:10:37] 2026-01-15 22:09:55,374 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 16:10:37] 2026-01-15 22:09:55,445 | INFO     | PID=851182 has CPU usage=7.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-15 16:10:37] 2026-01-15 22:09:55,445 | INFO     | .. there are 8 such processes running
[2026-01-15 16:10:37] 2026-01-15 22:09:56,447 | INFO     | time since job start (4893s) is within the limit (349056.0s)
[2026-01-15 16:10:37] 2026-01-15 22:09:57,877 | INFO     | monitor loop #366: job 0:6970458347 is in state 'finished'
[2026-01-15 16:10:37] 2026-01-15 22:09:57,877 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 16:10:37] 2026-01-15 22:09:58,452 | INFO     | time since job start (4895s) is within the limit (349056.0s)
[2026-01-15 16:10:37] 2026-01-15 22:10:00,380 | INFO     | monitor loop #367: job 0:6970458347 is in state 'finished'
[2026-01-15 16:10:37] 2026-01-15 22:10:00,380 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 16:10:37] 2026-01-15 22:10:00,457 | INFO     | time since job start (4897s) is within the limit (349056.0s)
[2026-01-15 16:10:37] 2026-01-15 22:10:02,463 | INFO     | time since job start (4899s) is within the limit (349056.0s)
[2026-01-15 16:10:37] 2026-01-15 22:10:02,577 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-15 16:10:37] 2026-01-15 22:10:02,581 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3624.5304687499997
[2026-01-15 16:10:37] 2026-01-15 22:10:02,585 | INFO     | using path: /var/lib/boinc-client/slots/7/PanDA_Pilot-6970458347/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 16:10:37] 2026-01-15 22:10:02,586 | INFO     | extracted standard info from prmon json
[2026-01-15 16:10:37] 2026-01-15 22:10:02,586 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 16:10:37] 2026-01-15 22:10:02,586 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 16:10:37] 2026-01-15 22:10:02,586 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 16:10:37] 2026-01-15 22:10:02,586 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 16:10:37] 2026-01-15 22:10:02,587 | INFO     | fitting pss+swap vs Time
[2026-01-15 16:10:37] 2026-01-15 22:10:02,588 | INFO     | sum of square deviations: 120605052.0
[2026-01-15 16:10:37] 2026-01-15 22:10:02,588 | INFO     | sum of deviations: -3330234244.0
[2026-01-15 16:10:37] 2026-01-15 22:10:02,588 | INFO     | mean x: 1768512626.0
[2026-01-15 16:10:37] 2026-01-15 22:10:02,588 | INFO     | mean y: 2365950.0821917807
[2026-01-15 16:10:37] 2026-01-15 22:10:02,588 | INFO     | intersect: 48835820356.71488
[2026-01-15 16:10:37] 2026-01-15 22:10:02,588 | INFO     | chi2: 0.010484412996302083
[2026-01-15 16:10:37] 2026-01-15 22:10:02,588 | INFO     | current memory leak: -27.61 B/s (using 73 data points, chi2=0.01)
[2026-01-15 16:10:37] 2026-01-15 22:10:02,589 | INFO     | could have reported an average CPU frequency of 3607 MHz (6 samples)
[2026-01-15 16:10:37] 2026-01-15 22:10:02,589 | INFO     | ..............................
[2026-01-15 16:10:37] 2026-01-15 22:10:02,589 | INFO     | . Timing measurements:
[2026-01-15 16:10:37] 2026-01-15 22:10:02,589 | INFO     | . get job = 0 s
[2026-01-15 16:10:37] 2026-01-15 22:10:02,589 | INFO     | . initial setup = 2 s
[2026-01-15 16:10:37] 2026-01-15 22:10:02,589 | INFO     | . payload setup = 4 s
[2026-01-15 16:10:37] 2026-01-15 22:10:02,589 | INFO     | . stage-in = 0 s
[2026-01-15 16:10:37] 2026-01-15 22:10:02,589 | INFO     | . payload execution = 4863 s
[2026-01-15 16:10:37] 2026-01-15 22:10:02,589 | INFO     | . stage-out = 0 s
[2026-01-15 16:10:37] 2026-01-15 22:10:02,589 | INFO     | . log creation = 0 s
[2026-01-15 16:10:37] 2026-01-15 22:10:02,589 | INFO     | ..............................
[2026-01-15 16:10:37] 2026-01-15 22:10:03,054 | INFO     | 
[2026-01-15 16:10:37] 2026-01-15 22:10:03,054 | INFO     | job summary report
[2026-01-15 16:10:37] 2026-01-15 22:10:03,054 | INFO     | --------------------------------------------------
[2026-01-15 16:10:37] 2026-01-15 22:10:03,054 | INFO     | PanDA job id: 6970458347
[2026-01-15 16:10:37] 2026-01-15 22:10:03,055 | INFO     | task id: 48215263
[2026-01-15 16:10:37] 2026-01-15 22:10:03,055 | INFO     | errors: (none)
[2026-01-15 16:10:37] 2026-01-15 22:10:03,055 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-15 16:10:37] 2026-01-15 22:10:03,055 | INFO     | pilot state: finished 
[2026-01-15 16:10:37] 2026-01-15 22:10:03,055 | INFO     | transexitcode: 0
[2026-01-15 16:10:37] 2026-01-15 22:10:03,055 | INFO     | exeerrorcode: 0
[2026-01-15 16:10:37] 2026-01-15 22:10:03,055 | INFO     | exeerrordiag: 
[2026-01-15 16:10:37] 2026-01-15 22:10:03,055 | INFO     | exitcode: 0
[2026-01-15 16:10:37] 2026-01-15 22:10:03,055 | INFO     | exitmsg: OK
[2026-01-15 16:10:37] 2026-01-15 22:10:03,055 | INFO     | cpuconsumptiontime: 18519 s
[2026-01-15 16:10:37] 2026-01-15 22:10:03,055 | INFO     | nevents: 400
[2026-01-15 16:10:37] 2026-01-15 22:10:03,055 | INFO     | neventsw: 0
[2026-01-15 16:10:37] 2026-01-15 22:10:03,055 | INFO     | pid: 857996
[2026-01-15 16:10:37] 2026-01-15 22:10:03,055 | INFO     | pgrp: 857996
[2026-01-15 16:10:37] 2026-01-15 22:10:03,055 | INFO     | corecount: 4
[2026-01-15 16:10:37] 2026-01-15 22:10:03,055 | INFO     | event service: False
[2026-01-15 16:10:37] 2026-01-15 22:10:03,055 | INFO     | sizes: {0: 2283726, 1: 2283981, 4: 2284243, 12: 2284271, 4871: 2310628, 4872: 2310627, 4873: 2319823, 4874: 2319879, 4885: 2320073}
[2026-01-15 16:10:37] 2026-01-15 22:10:03,055 | INFO     | --------------------------------------------------
[2026-01-15 16:10:37] 2026-01-15 22:10:03,055 | INFO     | 
[2026-01-15 16:10:37] 2026-01-15 22:10:03,056 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/7
[2026-01-15 16:10:37] 2026-01-15 22:10:03,074 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 16:10:37] 2026-01-15 22:10:03,074 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 16:10:37] 2026-01-15 22:10:03,074 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 16:10:37] 2026-01-15 22:10:03,074 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 16:10:37] 2026-01-15 22:10:03,074 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 16:10:37] 2026-01-15 22:10:03,074 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 16:10:37] 2026-01-15 22:10:03,074 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 16:10:37] 2026-01-15 22:10:03,074 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 16:10:37] 2026-01-15 22:10:03,074 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 16:10:37] 2026-01-15 22:10:03,074 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 16:10:37] 2026-01-15 22:10:03,075 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 16:10:37] 2026-01-15 22:10:03,075 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 16:10:37] 2026-01-15 22:10:03,075 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 16:10:37] 2026-01-15 22:10:03,075 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 16:10:37] 2026-01-15 22:10:03,075 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 16:10:37] 2026-01-15 22:10:03,075 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 16:10:37] 2026-01-15 22:10:03,075 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 16:10:37] 2026-01-15 22:10:03,075 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 16:10:37] 2026-01-15 22:10:03,075 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 16:10:37] 2026-01-15 22:10:03,075 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 16:10:37] 2026-01-15 22:10:03,075 | INFO     | job 6970458347 has completed (purged errors)
[2026-01-15 16:10:37] 2026-01-15 22:10:03,075 | INFO     | overall cleanup function is called
[2026-01-15 16:10:37] 2026-01-15 22:10:04,083 | INFO     | --- collectZombieJob: --- 10, [857996]
[2026-01-15 16:10:37] 2026-01-15 22:10:04,083 | INFO     | zombie collector waiting for pid 857996
[2026-01-15 16:10:37] 2026-01-15 22:10:04,083 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 16:10:37] 2026-01-15 22:10:04,083 | INFO     | collected zombie processes
[2026-01-15 16:10:37] 2026-01-15 22:10:04,083 | INFO     | will attempt to kill all subprocesses of pid=857996
[2026-01-15 16:10:37] 2026-01-15 22:10:04,252 | INFO     | process IDs to be killed: [857996] (in reverse order)
[2026-01-15 16:10:37] 2026-01-15 22:10:04,320 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 16:10:37] 2026-01-15 22:10:04,320 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 16:10:37] 2026-01-15 22:10:04,325 | INFO     | did not find any defunct processes belonging to 857996
[2026-01-15 16:10:37] 2026-01-15 22:10:04,330 | INFO     | did not find any defunct processes belonging to 857996
[2026-01-15 16:10:37] 2026-01-15 22:10:04,330 | INFO     | ready for new job
[2026-01-15 16:10:37] 2026-01-15 22:10:04,330 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 16:10:37] 2026-01-15 22:10:04,331 | INFO     | ***************************************
[2026-01-15 16:10:37] 2026-01-15 22:10:04,331 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 16:10:37] 2026-01-15 22:10:04,331 | INFO     | ***************************************
[2026-01-15 16:10:37] 2026-01-15 22:10:04,331 | INFO     | 
[2026-01-15 16:10:37] 2026-01-15 22:10:04,333 | INFO     | architecture information:
[2026-01-15 16:10:37] 2026-01-15 22:10:04,333 | INFO     | executing command: cat /etc/os-release
[2026-01-15 16:10:37] 2026-01-15 22:10:04,347 | INFO     | cat /etc/os-release:
[2026-01-15 16:10:37] NAME="CentOS Linux"
[2026-01-15 16:10:37] VERSION="7 (Core)"
[2026-01-15 16:10:37] ID="centos"
[2026-01-15 16:10:37] ID_LIKE="rhel fedora"
[2026-01-15 16:10:37] VERSION_ID="7"
[2026-01-15 16:10:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 16:10:37] ANSI_COLOR="0;31"
[2026-01-15 16:10:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 16:10:37] HOME_URL="https://www.centos.org/"
[2026-01-15 16:10:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 16:10:37] 
[2026-01-15 16:10:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 16:10:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 16:10:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 16:10:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 16:10:37] 
[2026-01-15 16:10:37] 2026-01-15 22:10:04,347 | INFO     | ***************************************
[2026-01-15 16:10:37] 2026-01-15 22:10:04,850 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/7
[2026-01-15 16:10:37] 2026-01-15 22:10:04,866 | INFO     | sufficient remaining disk space (1812229783552 B)
[2026-01-15 16:10:37] 2026-01-15 22:10:04,866 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 16:10:37] 2026-01-15 22:10:04,867 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 16:10:37] 2026-01-15 22:10:04,867 | INFO     | update_server=False
[2026-01-15 16:10:37] 2026-01-15 22:10:04,867 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 16:10:37] 2026-01-15 22:10:04,867 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 16:10:37] 2026-01-15 22:10:04,867 | INFO     | aborting loop
[2026-01-15 16:10:37] 2026-01-15 22:10:04,941 | INFO     | all job control threads have been joined
[2026-01-15 16:10:37] 2026-01-15 22:10:05,569 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 16:10:37] 2026-01-15 22:10:05,612 | INFO     | all payload control threads have been joined
[2026-01-15 16:10:37] 2026-01-15 22:10:05,728 | INFO     | all data control threads have been joined
[2026-01-15 16:10:37] 2026-01-15 22:10:05,872 | INFO     | [job] job monitor thread has finished
[2026-01-15 16:10:37] 2026-01-15 22:10:05,873 | INFO     | [job] retrieve thread has finished
[2026-01-15 16:10:37] 2026-01-15 22:10:05,894 | INFO     | [data] copytool_in thread has finished
[2026-01-15 16:10:37] 2026-01-15 22:10:05,936 | INFO     | [payload] validate_post thread has finished
[2026-01-15 16:10:37] 2026-01-15 22:10:05,946 | INFO     | [job] control thread has finished
[2026-01-15 16:10:37] 2026-01-15 22:10:06,169 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 16:10:37] 2026-01-15 22:10:06,407 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 16:10:37] 2026-01-15 22:10:06,597 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 16:10:37] 2026-01-15 22:10:06,617 | INFO     | [payload] control thread has finished
[2026-01-15 16:10:37] 2026-01-15 22:10:06,733 | INFO     | [data] control thread has finished
[2026-01-15 16:10:37] 2026-01-15 22:10:06,968 | INFO     | [payload] failed_post thread has finished
[2026-01-15 16:10:37] 2026-01-15 22:10:07,027 | INFO     | [job] validate thread has finished
[2026-01-15 16:10:37] 2026-01-15 22:10:07,262 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 16:10:37] 2026-01-15 22:10:07,290 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 16:10:37] 2026-01-15 22:10:07,574 | INFO     | [data] copytool_out thread has finished
[2026-01-15 16:10:37] 2026-01-15 22:10:07,671 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 16:10:37] 2026-01-15 22:10:08,676 | INFO     | [job] queue monitor thread has finished
[2026-01-15 16:10:37] 2026-01-15 22:10:10,409 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 16:10:37] 2026-01-15 22:10:31,214 | INFO     | [monitor] cgroup control has ended
[2026-01-15 16:10:37] 2026-01-15 22:10:32,221 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 124059542222656)>', '<ExcThread(monitor, started 124058905597696)>']
[2026-01-15 16:10:37] 2026-01-15 22:10:35,756 | INFO     | PID=851182 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-15 16:10:37] 2026-01-15 22:10:35,756 | INFO     | .. there are 8 such processes running
[2026-01-15 16:10:37] 2026-01-15 22:10:35,757 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 16:10:37] 2026-01-15 22:10:35,757 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 16:10:37] 2026-01-15 22:10:35,757 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 16:10:37] 2026-01-15 22:10:35,757 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 16:10:37] 2026-01-15 22:10:35,757 | INFO     | [monitor] control thread has ended
[2026-01-15 16:10:37] 2026-01-15 22:10:37,244 | INFO     | all workflow threads have been joined
[2026-01-15 16:10:37] 2026-01-15 22:10:37,244 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 16:10:37] 2026-01-15 22:10:37,244 | INFO     | traces error code: 0
[2026-01-15 16:10:37] 2026-01-15 22:10:37,244 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 16:10:37] 2026-01-15 22:10:37,323 [wrapper] ==== pilot stdout END ====
[2026-01-15 16:10:37] 2026-01-15 22:10:37,325 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 16:10:37] 2026-01-15 22:10:37,327 [wrapper] pilotpid: 851182
[2026-01-15 16:10:37] 2026-01-15 22:10:37,329 [wrapper] Pilot exit status: 0
[2026-01-15 16:10:37] 2026-01-15 22:10:37,337 [wrapper] pandaids: 6970458347
[2026-01-15 16:10:37] 2026-01-15 22:10:37,376 [wrapper] cleanup supervisor_pilot 1056853 851183
[2026-01-15 16:10:37] 2026-01-15 22:10:37,379 [wrapper] Test setup, not cleaning
[2026-01-15 16:10:37] 2026-01-15 22:10:37,381 [wrapper] apfmon messages muted
[2026-01-15 16:10:37] 2026-01-15 22:10:37,383 [wrapper] ==== wrapper stdout END ====
[2026-01-15 16:10:37] 2026-01-15 22:10:37,385 [wrapper] ==== wrapper stderr END ====
[2026-01-15 16:10:37]  *** Error codes and diagnostics ***
[2026-01-15 16:10:37]     "exeErrorCode": 0,
[2026-01-15 16:10:37]     "exeErrorDiag": "",
[2026-01-15 16:10:37]     "pilotErrorCode": 0,
[2026-01-15 16:10:37]     "pilotErrorDiag": "",
[2026-01-15 16:10:37]  *** Listing of results directory ***
[2026-01-15 16:10:37] total 739876
[2026-01-15 16:10:37] -rw-r--r-- 1 boinc boinc      5112 Jan 15 02:34 queuedata.json
[2026-01-15 16:10:37] -rw-r--r-- 1 boinc boinc    579449 Jan 15 02:34 pilot3.tar.gz
[2026-01-15 16:10:37] -rwx------ 1 boinc boinc     36322 Jan 15 02:34 runpilot2-wrapper.sh
[2026-01-15 16:10:37] -rw-r--r-- 1 boinc boinc       100 Jan 15 14:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 16:10:37] -rwxr-xr-x 1 boinc boinc      7986 Jan 15 14:48 run_atlas
[2026-01-15 16:10:37] -rw-r--r-- 1 boinc boinc       105 Jan 15 14:48 job.xml
[2026-01-15 16:10:37] -rw-r--r-- 1 boinc boinc      9664 Jan 15 14:48 init_data.xml
[2026-01-15 16:10:37] -rw-r--r-- 2 boinc boinc 599218892 Jan 15 14:48 EVNT.32794306._001925.pool.root.1
[2026-01-15 16:10:37] -rw-r--r-- 2 boinc boinc     15847 Jan 15 14:48 start_atlas.sh
[2026-01-15 16:10:37] drwxrwx--x 2 boinc boinc      4096 Jan 15 14:48 shared
[2026-01-15 16:10:37] -rw-r--r-- 2 boinc boinc    592400 Jan 15 14:48 input.tar.gz
[2026-01-15 16:10:37] -rw-r--r-- 1 boinc boinc         0 Jan 15 14:48 boinc_lockfile
[2026-01-15 16:10:37] -rw-r--r-- 1 boinc boinc      2506 Jan 15 14:48 pandaJob.out
[2026-01-15 16:10:37] -rw------- 1 boinc boinc   1004075 Jan 15 14:48 agis_schedconf.cvmfs.json
[2026-01-15 16:10:37] -rw------- 1 boinc boinc   1516246 Jan 15 14:48 agis_ddmendpoints.agis.ALL.json
[2026-01-15 16:10:37] drwx------ 5 boinc boinc      4096 Jan 15 14:48 pilot3
[2026-01-15 16:10:37] -rw------- 1 boinc boinc 152517464 Jan 15 16:09 HITS.48215263._049572.pool.root.1
[2026-01-15 16:10:37] -rw-r--r-- 1 boinc boinc       530 Jan 15 16:09 boinc_task_state.xml
[2026-01-15 16:10:37] -rw------- 1 boinc boinc      1021 Jan 15 16:09 memory_monitor_summary.json
[2026-01-15 16:10:37] -rw------- 1 boinc boinc    252784 Jan 15 16:09 log.48215263._049572.job.log.tgz.1
[2026-01-15 16:10:37] -rw------- 1 boinc boinc      7752 Jan 15 16:10 heartbeat.json
[2026-01-15 16:10:37] -rw-r--r-- 1 boinc boinc      8192 Jan 15 16:10 boinc_mmap_file
[2026-01-15 16:10:37] -rw-r--r-- 1 boinc boinc        27 Jan 15 16:10 wrapper_checkpoint.txt
[2026-01-15 16:10:37] -rw------- 1 boinc boinc        95 Jan 15 16:10 pilot_heartbeat.json
[2026-01-15 16:10:37] -rw------- 1 boinc boinc      4831 Jan 15 16:10 pilotlog.txt
[2026-01-15 16:10:37] -rw------- 1 boinc boinc    728743 Jan 15 16:10 log.48215263._049572.job.log.1
[2026-01-15 16:10:37] -rw------- 1 boinc boinc       357 Jan 15 16:10 output.list
[2026-01-15 16:10:37] -rw-r--r-- 1 boinc boinc       620 Jan 15 16:10 runtime_log
[2026-01-15 16:10:37] -rw------- 1 boinc boinc   1003520 Jan 15 16:10 result.tar.gz
[2026-01-15 16:10:37] -rw------- 1 boinc boinc       652 Jan 15 16:10 VvyNDmRzX08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmISoKDmYTUrbm.diag
[2026-01-15 16:10:37] -rw-r--r-- 1 boinc boinc      8933 Jan 15 16:10 runtime_log.err
[2026-01-15 16:10:37] -rw-r--r-- 1 boinc boinc     22259 Jan 15 16:10 stderr.txt
[2026-01-15 16:10:37] HITS file was successfully produced:
[2026-01-15 16:10:37] -rw------- 1 boinc boinc 152517464 Jan 15 16:09 shared/HITS.pool.root.1
[2026-01-15 16:10:37]  *** Contents of shared directory: ***
[2026-01-15 16:10:37] total 735704
[2026-01-15 16:10:37] -rw-r--r-- 2 boinc boinc 599218892 Jan 15 14:48 ATLAS.root_0
[2026-01-15 16:10:37] -rw-r--r-- 2 boinc boinc     15847 Jan 15 14:48 start_atlas.sh
[2026-01-15 16:10:37] -rw-r--r-- 2 boinc boinc    592400 Jan 15 14:48 input.tar.gz
[2026-01-15 16:10:37] -rw------- 1 boinc boinc 152517464 Jan 15 16:09 HITS.pool.root.1
[2026-01-15 16:10:37] -rw------- 1 boinc boinc   1003520 Jan 15 16:10 result.tar.gz
16:10:38 (847291): run_atlas exited; CPU time 18583.091356
16:10:38 (847291): called boinc_finish(0)

</stderr_txt>
]]>

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