Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
14:38:04 (1117324): wrapper (7.7.26015): starting
14:38:04 (1117324): wrapper: running run_atlas (--nthreads 12)
[2026-01-16 14:38:04] Arguments: --nthreads 12
[2026-01-16 14:38:04] Threads: 12
[2026-01-16 14:38:04] Checking for CVMFS
[2026-01-16 14:38:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-16 14:38:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-16 14:38:04] Running cvmfs_config stat atlas.cern.ch
[2026-01-16 14:38:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-16 14:38:05] 2.13.3.0 40677 10606 76644 155210 2 236 4044297 4096000 19477 130560 0 86918212 99.982 1157592 229 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-01-16 14:38:05] CVMFS is ok
[2026-01-16 14:38:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-16 14:38:05] Checking for apptainer binary...
[2026-01-16 14:38:05] apptainer is not installed, using version from CVMFS
[2026-01-16 14:38:05] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-16 14:38:07] epyc7v12
[2026-01-16 14:38:07] apptainer works
[2026-01-16 14:38:07] Set ATHENA_PROC_NUMBER=12
[2026-01-16 14:38:07] Set ATHENA_CORE_NUMBER=12
[2026-01-16 14:38:07] Starting ATLAS job with PandaID=6970291472
[2026-01-16 14:38:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31423/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-16 16:08:52]  *** The last 200 lines of the pilot log: ***
[2026-01-16 16:08:52] 2026-01-16 16:07:42,612 | INFO     | adding to output.list: log.48215263._046457.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d7/eb/log.48215263._046457.job.log.tg
[2026-01-16 16:08:52] 2026-01-16 16:07:42,613 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-16 16:08:52] 2026-01-16 16:07:42,613 | INFO     | summary of transferred files:
[2026-01-16 16:08:52] 2026-01-16 16:07:42,615 | INFO     |  -- lfn=log.48215263._046457.job.log.tgz.1, status_code=0, status=transferred
[2026-01-16 16:08:52] 2026-01-16 16:07:42,615 | INFO     | stage-out finished correctly
[2026-01-16 16:08:52] 2026-01-16 16:07:42,828 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-16 16:08:52] 2026-01-16 16:07:44,029 | INFO     | time since job start (5347s) is within the limit (349056.0s)
[2026-01-16 16:08:52] 2026-01-16 16:07:45,653 | INFO     | job 6970291472 has state=finished
[2026-01-16 16:08:52] 2026-01-16 16:07:45,653 | INFO     | preparing for final server update for job 6970291472 in state='finished'
[2026-01-16 16:08:52] 2026-01-16 16:07:45,654 | INFO     | this job has now completed (state=finished)
[2026-01-16 16:08:52] 2026-01-16 16:07:45,654 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-16 16:08:52] 2026-01-16 16:07:45,654 | INFO     | log transfer has been attempted: DONE
[2026-01-16 16:08:52] 2026-01-16 16:07:45,654 | INFO     | job 6970291472 has finished - writing final server update
[2026-01-16 16:08:52] 2026-01-16 16:07:45,655 | INFO     | total number of processed events: 400 (read)
[2026-01-16 16:08:52] 2026-01-16 16:07:45,655 | INFO     | executing command: lscpu
[2026-01-16 16:08:52] 2026-01-16 16:07:45,870 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-16 16:08:52] 2026-01-16 16:07:46,035 | INFO     | time since job start (5349s) is within the limit (349056.0s)
[2026-01-16 16:08:52] 2026-01-16 16:07:47,344 | WARNING  | process 1128828 can no longer be monitored (due to stat problems) - aborting
[2026-01-16 16:08:52] 2026-01-16 16:07:47,345 | INFO     | using path: /opt/boinc/instance_homes/boinc_31423/slots/1/PanDA_Pilot-6970291472/memory_monitor_summary.json (trf name=prmon)
[2026-01-16 16:08:52] 2026-01-16 16:07:48,040 | INFO     | time since job start (5351s) is within the limit (349056.0s)
[2026-01-16 16:08:52] 2026-01-16 16:07:48,509 | INFO     | number of running child processes to parent process 1128828: 1
[2026-01-16 16:08:52] 2026-01-16 16:07:48,510 | INFO     | maximum number of monitored processes: 6
[2026-01-16 16:08:52] 2026-01-16 16:07:50,050 | INFO     | time since job start (5353s) is within the limit (349056.0s)
[2026-01-16 16:08:52] 2026-01-16 16:07:51,012 | INFO     | monitor loop #352: job 0:6970291472 is in state 'finished'
[2026-01-16 16:08:52] 2026-01-16 16:07:51,012 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 16:08:52] 2026-01-16 16:07:52,055 | INFO     | time since job start (5355s) is within the limit (349056.0s)
[2026-01-16 16:08:52] 2026-01-16 16:07:53,519 | INFO     | monitor loop #353: job 0:6970291472 is in state 'finished'
[2026-01-16 16:08:52] 2026-01-16 16:07:53,519 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 16:08:52] 2026-01-16 16:07:54,721 | INFO     | PID=1121520 has CPU usage=20.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-16 16:08:52] 2026-01-16 16:07:54,721 | INFO     | .. there are 22 such processes running
[2026-01-16 16:08:52] 2026-01-16 16:07:55,726 | INFO     | time since job start (5358s) is within the limit (349056.0s)
[2026-01-16 16:08:52] 2026-01-16 16:07:56,022 | INFO     | monitor loop #354: job 0:6970291472 is in state 'finished'
[2026-01-16 16:08:52] 2026-01-16 16:07:56,022 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 16:08:52] 2026-01-16 16:07:57,731 | INFO     | time since job start (5360s) is within the limit (349056.0s)
[2026-01-16 16:08:52] 2026-01-16 16:07:58,525 | INFO     | monitor loop #355: job 0:6970291472 is in state 'finished'
[2026-01-16 16:08:52] 2026-01-16 16:07:58,525 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 16:08:52] 2026-01-16 16:07:58,914 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-16 16:08:52] 2026-01-16 16:07:58,966 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2397.7017500000006
[2026-01-16 16:08:52] 2026-01-16 16:07:59,024 | INFO     | using path: /opt/boinc/instance_homes/boinc_31423/slots/1/PanDA_Pilot-6970291472/memory_monitor_summary.json (trf name=prmon)
[2026-01-16 16:08:52] 2026-01-16 16:07:59,025 | INFO     | extracted standard info from prmon json
[2026-01-16 16:08:52] 2026-01-16 16:07:59,027 | INFO     | extracted standard memory fields from prmon json
[2026-01-16 16:08:52] 2026-01-16 16:07:59,027 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-16 16:08:52] 2026-01-16 16:07:59,027 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-16 16:08:52] 2026-01-16 16:07:59,028 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-16 16:08:52] 2026-01-16 16:07:59,034 | INFO     | fitting pss+swap vs Time
[2026-01-16 16:08:52] 2026-01-16 16:07:59,034 | INFO     | sum of square deviations: 158737860.0
[2026-01-16 16:08:52] 2026-01-16 16:07:59,035 | INFO     | sum of deviations: 6198327272.5
[2026-01-16 16:08:52] 2026-01-16 16:07:59,035 | INFO     | mean x: 1768577099.5
[2026-01-16 16:08:52] 2026-01-16 16:07:59,035 | INFO     | mean y: 2664240.9875
[2026-01-16 16:08:52] 2026-01-16 16:07:59,035 | INFO     | intersect: -69055969089.1443
[2026-01-16 16:08:52] 2026-01-16 16:07:59,035 | INFO     | chi2: 0.18481758936867387
[2026-01-16 16:08:52] 2026-01-16 16:07:59,036 | INFO     | current memory leak: 39.05 B/s (using 80 data points, chi2=0.18)
[2026-01-16 16:08:52] 2026-01-16 16:07:59,036 | INFO     | could have reported an average CPU frequency of 2401 MHz (6 samples)
[2026-01-16 16:08:52] 2026-01-16 16:07:59,036 | INFO     | ..............................
[2026-01-16 16:08:52] 2026-01-16 16:07:59,036 | INFO     | . Timing measurements:
[2026-01-16 16:08:52] 2026-01-16 16:07:59,036 | INFO     | . get job = 0 s
[2026-01-16 16:08:52] 2026-01-16 16:07:59,037 | INFO     | . initial setup = 2 s
[2026-01-16 16:08:52] 2026-01-16 16:07:59,037 | INFO     | . payload setup = 17 s
[2026-01-16 16:08:52] 2026-01-16 16:07:59,037 | INFO     | . stage-in = 0 s
[2026-01-16 16:08:52] 2026-01-16 16:07:59,039 | INFO     | . payload execution = 5285 s
[2026-01-16 16:08:52] 2026-01-16 16:07:59,039 | INFO     | . stage-out = 1 s
[2026-01-16 16:08:52] 2026-01-16 16:07:59,039 | INFO     | . log creation = 0 s
[2026-01-16 16:08:52] 2026-01-16 16:07:59,039 | INFO     | ..............................
[2026-01-16 16:08:52] 2026-01-16 16:07:59,697 | INFO     | 
[2026-01-16 16:08:52] 2026-01-16 16:07:59,697 | INFO     | job summary report
[2026-01-16 16:08:52] 2026-01-16 16:07:59,697 | INFO     | --------------------------------------------------
[2026-01-16 16:08:52] 2026-01-16 16:07:59,697 | INFO     | PanDA job id: 6970291472
[2026-01-16 16:08:52] 2026-01-16 16:07:59,698 | INFO     | task id: 48215263
[2026-01-16 16:08:52] 2026-01-16 16:07:59,698 | INFO     | errors: (none)
[2026-01-16 16:08:52] 2026-01-16 16:07:59,698 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-16 16:08:52] 2026-01-16 16:07:59,698 | INFO     | pilot state: finished 
[2026-01-16 16:08:52] 2026-01-16 16:07:59,698 | INFO     | transexitcode: 0
[2026-01-16 16:08:52] 2026-01-16 16:07:59,698 | INFO     | exeerrorcode: 0
[2026-01-16 16:08:52] 2026-01-16 16:07:59,698 | INFO     | exeerrordiag: 
[2026-01-16 16:08:52] 2026-01-16 16:07:59,698 | INFO     | exitcode: 0
[2026-01-16 16:08:52] 2026-01-16 16:07:59,698 | INFO     | exitmsg: OK
[2026-01-16 16:08:52] 2026-01-16 16:07:59,699 | INFO     | cpuconsumptiontime: 29285 s
[2026-01-16 16:08:52] 2026-01-16 16:07:59,699 | INFO     | nevents: 400
[2026-01-16 16:08:52] 2026-01-16 16:07:59,699 | INFO     | neventsw: 0
[2026-01-16 16:08:52] 2026-01-16 16:07:59,699 | INFO     | pid: 1128828
[2026-01-16 16:08:52] 2026-01-16 16:07:59,699 | INFO     | pgrp: 1128828
[2026-01-16 16:08:52] 2026-01-16 16:07:59,699 | INFO     | corecount: 12
[2026-01-16 16:08:52] 2026-01-16 16:07:59,699 | INFO     | event service: False
[2026-01-16 16:08:52] 2026-01-16 16:07:59,699 | INFO     | sizes: {0: 2283124, 1: 2283832, 2: 2284031, 13: 2284031, 15: 2284349, 24: 2284377, 5306: 2311241, 5307: 2311240, 5308: 2320340, 5309: 2320396, 5325: 2320590}
[2026-01-16 16:08:52] 2026-01-16 16:07:59,699 | INFO     | --------------------------------------------------
[2026-01-16 16:08:52] 2026-01-16 16:07:59,699 | INFO     | 
[2026-01-16 16:08:52] 2026-01-16 16:07:59,700 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31423/slots/1
[2026-01-16 16:08:52] 2026-01-16 16:07:59,736 | INFO     | time since job start (5362s) is within the limit (349056.0s)
[2026-01-16 16:08:52] 2026-01-16 16:07:59,755 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-16 16:08:52] 2026-01-16 16:07:59,756 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-16 16:08:52] 2026-01-16 16:07:59,756 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-16 16:08:52] 2026-01-16 16:07:59,756 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-16 16:08:52] 2026-01-16 16:07:59,756 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-16 16:08:52] 2026-01-16 16:07:59,757 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-16 16:08:52] 2026-01-16 16:07:59,757 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-16 16:08:52] 2026-01-16 16:07:59,757 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-16 16:08:52] 2026-01-16 16:07:59,760 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-16 16:08:52] 2026-01-16 16:07:59,760 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-16 16:08:52] 2026-01-16 16:07:59,760 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-16 16:08:52] 2026-01-16 16:07:59,760 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-16 16:08:52] 2026-01-16 16:07:59,760 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-16 16:08:52] 2026-01-16 16:07:59,760 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-16 16:08:52] 2026-01-16 16:07:59,760 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-16 16:08:52] 2026-01-16 16:07:59,761 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-16 16:08:52] 2026-01-16 16:07:59,761 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-16 16:08:52] 2026-01-16 16:07:59,761 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-16 16:08:52] 2026-01-16 16:07:59,761 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-16 16:08:52] 2026-01-16 16:07:59,762 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-16 16:08:52] 2026-01-16 16:07:59,762 | INFO     | job 6970291472 has completed (purged errors)
[2026-01-16 16:08:52] 2026-01-16 16:07:59,762 | INFO     | overall cleanup function is called
[2026-01-16 16:08:52] 2026-01-16 16:08:00,778 | INFO     | --- collectZombieJob: --- 10, [1128828]
[2026-01-16 16:08:52] 2026-01-16 16:08:00,778 | INFO     | zombie collector waiting for pid 1128828
[2026-01-16 16:08:52] 2026-01-16 16:08:00,778 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-16 16:08:52] 2026-01-16 16:08:00,778 | INFO     | collected zombie processes
[2026-01-16 16:08:52] 2026-01-16 16:08:00,779 | INFO     | will attempt to kill all subprocesses of pid=1128828
[2026-01-16 16:08:52] 2026-01-16 16:08:02,276 | INFO     | process IDs to be killed: [1128828] (in reverse order)
[2026-01-16 16:08:52] 2026-01-16 16:08:02,830 | WARNING  | found no corresponding commands to process id(s)
[2026-01-16 16:08:52] 2026-01-16 16:08:02,831 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-16 16:08:52] 2026-01-16 16:08:02,889 | INFO     | did not find any defunct processes belonging to 1128828
[2026-01-16 16:08:52] 2026-01-16 16:08:02,925 | INFO     | did not find any defunct processes belonging to 1128828
[2026-01-16 16:08:52] 2026-01-16 16:08:02,926 | INFO     | ready for new job
[2026-01-16 16:08:52] 2026-01-16 16:08:02,926 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-16 16:08:52] 2026-01-16 16:08:02,930 | INFO     | ***************************************
[2026-01-16 16:08:52] 2026-01-16 16:08:02,933 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-16 16:08:52] 2026-01-16 16:08:02,933 | INFO     | ***************************************
[2026-01-16 16:08:52] 2026-01-16 16:08:02,933 | INFO     | 
[2026-01-16 16:08:52] 2026-01-16 16:08:02,949 | INFO     | architecture information:
[2026-01-16 16:08:52] 2026-01-16 16:08:02,951 | INFO     | executing command: cat /etc/os-release
[2026-01-16 16:08:52] 2026-01-16 16:08:03,012 | INFO     | cat /etc/os-release:
[2026-01-16 16:08:52] NAME="CentOS Linux"
[2026-01-16 16:08:52] VERSION="7 (Core)"
[2026-01-16 16:08:52] ID="centos"
[2026-01-16 16:08:52] ID_LIKE="rhel fedora"
[2026-01-16 16:08:52] VERSION_ID="7"
[2026-01-16 16:08:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-16 16:08:52] ANSI_COLOR="0;31"
[2026-01-16 16:08:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-16 16:08:52] HOME_URL="https://www.centos.org/"
[2026-01-16 16:08:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-16 16:08:52] 
[2026-01-16 16:08:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-16 16:08:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-16 16:08:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-16 16:08:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-16 16:08:52] 
[2026-01-16 16:08:52] 2026-01-16 16:08:03,012 | INFO     | ***************************************
[2026-01-16 16:08:52] 2026-01-16 16:08:03,519 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31423/slots/1
[2026-01-16 16:08:52] 2026-01-16 16:08:03,593 | INFO     | sufficient remaining disk space (308097843200 B)
[2026-01-16 16:08:52] 2026-01-16 16:08:03,593 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-16 16:08:52] 2026-01-16 16:08:03,593 | INFO     | current server update state: UPDATING_FINAL
[2026-01-16 16:08:52] 2026-01-16 16:08:03,594 | INFO     | update_server=False
[2026-01-16 16:08:52] 2026-01-16 16:08:03,594 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-16 16:08:52] 2026-01-16 16:08:03,594 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-16 16:08:52] 2026-01-16 16:08:03,610 | INFO     | all data control threads have been joined
[2026-01-16 16:08:52] 2026-01-16 16:08:04,171 | INFO     | all job control threads have been joined
[2026-01-16 16:08:52] 2026-01-16 16:08:04,283 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-16 16:08:52] 2026-01-16 16:08:04,551 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-16 16:08:52] 2026-01-16 16:08:04,551 | INFO     | aborting loop
[2026-01-16 16:08:52] 2026-01-16 16:08:04,600 | INFO     | [job] retrieve thread has finished
[2026-01-16 16:08:52] 2026-01-16 16:08:04,615 | INFO     | [data] control thread has finished
[2026-01-16 16:08:52] 2026-01-16 16:08:04,653 | INFO     | [payload] validate_post thread has finished
[2026-01-16 16:08:52] 2026-01-16 16:08:04,656 | INFO     | all payload control threads have been joined
[2026-01-16 16:08:52] 2026-01-16 16:08:04,774 | INFO     | [data] copytool_in thread has finished
[2026-01-16 16:08:52] 2026-01-16 16:08:04,849 | INFO     | [payload] failed_post thread has finished
[2026-01-16 16:08:52] 2026-01-16 16:08:05,180 | INFO     | [job] control thread has finished
[2026-01-16 16:08:52] 2026-01-16 16:08:05,227 | INFO     | [payload] validate_pre thread has finished
[2026-01-16 16:08:52] 2026-01-16 16:08:05,288 | INFO     | [job] queue monitor thread has finished
[2026-01-16 16:08:52] 2026-01-16 16:08:05,552 | INFO     | [job] validate thread has finished
[2026-01-16 16:08:52] 2026-01-16 16:08:05,553 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-16 16:08:52] 2026-01-16 16:08:05,557 | INFO     | [job] job monitor thread has finished
[2026-01-16 16:08:52] 2026-01-16 16:08:05,599 | INFO     | [data] copytool_out thread has finished
[2026-01-16 16:08:52] 2026-01-16 16:08:05,661 | INFO     | [payload] control thread has finished
[2026-01-16 16:08:52] 2026-01-16 16:08:05,894 | INFO     | [job] create_data_payload thread has finished
[2026-01-16 16:08:52] 2026-01-16 16:08:06,090 | INFO     | [payload] execute_payloads thread has finished
[2026-01-16 16:08:52] 2026-01-16 16:08:07,086 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-16 16:08:52] 2026-01-16 16:08:11,091 | INFO     | [data] queue_monitor thread has finished
[2026-01-16 16:08:52] 2026-01-16 16:08:33,076 [wrapper] supervise_pilot (15 min periods counter: 7)
[2026-01-16 16:08:52] 2026-01-16 16:08:34,169 | INFO     | PID=1121520 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-16 16:08:52] 2026-01-16 16:08:34,170 | INFO     | .. there are 22 such processes running
[2026-01-16 16:08:52] 2026-01-16 16:08:34,170 | INFO     | found 0 job(s) in 20 queues
[2026-01-16 16:08:52] 2026-01-16 16:08:34,171 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-16 16:08:52] 2026-01-16 16:08:34,171 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-16 16:08:52] 2026-01-16 16:08:45,968 | INFO     | [monitor] cgroup control has ended
[2026-01-16 16:08:52] 2026-01-16 16:08:46,293 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 124328348890944)>', '<ExcThread(monitor, started 124327282337536)>']
[2026-01-16 16:08:52] 2026-01-16 16:08:47,240 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-16 16:08:52] 2026-01-16 16:08:47,240 | INFO     | [monitor] control thread has ended
[2026-01-16 16:08:52] 2026-01-16 16:08:51,318 | INFO     | all workflow threads have been joined
[2026-01-16 16:08:52] 2026-01-16 16:08:51,318 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-16 16:08:52] 2026-01-16 16:08:51,319 | INFO     | traces error code: 0
[2026-01-16 16:08:52] 2026-01-16 16:08:51,319 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-16 16:08:52] 2026-01-16 16:08:51,705 [wrapper] ==== pilot stdout END ====
[2026-01-16 16:08:52] 2026-01-16 16:08:51,710 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-16 16:08:52] 2026-01-16 16:08:51,715 [wrapper] pilotpid: 1121520
[2026-01-16 16:08:52] 2026-01-16 16:08:51,723 [wrapper] Pilot exit status: 0
[2026-01-16 16:08:52] 2026-01-16 16:08:51,757 [wrapper] pandaids: 6970291472
[2026-01-16 16:08:52] 2026-01-16 16:08:51,908 [wrapper] cleanup supervisor_pilot 1636811 1121521
[2026-01-16 16:08:52] 2026-01-16 16:08:51,913 [wrapper] Test setup, not cleaning
[2026-01-16 16:08:52] 2026-01-16 16:08:51,917 [wrapper] apfmon messages muted
[2026-01-16 16:08:52] 2026-01-16 16:08:51,923 [wrapper] ==== wrapper stdout END ====
[2026-01-16 16:08:52] 2026-01-16 16:08:51,934 [wrapper] ==== wrapper stderr END ====
[2026-01-16 16:08:52]  *** Error codes and diagnostics ***
[2026-01-16 16:08:52]     "exeErrorCode": 0,
[2026-01-16 16:08:52]     "exeErrorDiag": "",
[2026-01-16 16:08:52]     "pilotErrorCode": 0,
[2026-01-16 16:08:52]     "pilotErrorDiag": "",
[2026-01-16 16:08:52]  *** Listing of results directory ***
[2026-01-16 16:08:52] total 733296
[2026-01-16 16:08:52] -rw-r--r-- 1 boinc boinc      5112 Jan 15 04:50 queuedata.json
[2026-01-16 16:08:52] -rw-r--r-- 1 boinc boinc    579449 Jan 15 04:50 pilot3.tar.gz
[2026-01-16 16:08:52] -rwx------ 1 boinc boinc     36322 Jan 15 04:51 runpilot2-wrapper.sh
[2026-01-16 16:08:52] -rw-rw-r-- 1 boinc boinc       100 Jan 16 14:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-16 16:08:52] -rwxr-xr-x 1 boinc boinc      7986 Jan 16 14:38 run_atlas
[2026-01-16 16:08:52] -rw-rw-r-- 1 boinc boinc       105 Jan 16 14:38 job.xml
[2026-01-16 16:08:52] -rw-r--r-- 2 boinc boinc 594634110 Jan 16 14:38 EVNT.32794306._001810.pool.root.1
[2026-01-16 16:08:52] -rw-r--r-- 2 boinc boinc     15847 Jan 16 14:38 start_atlas.sh
[2026-01-16 16:08:52] drwxrwx--x 2 boinc boinc      4096 Jan 16 14:38 shared
[2026-01-16 16:08:52] -rw-r--r-- 2 boinc boinc    592406 Jan 16 14:38 input.tar.gz
[2026-01-16 16:08:52] -rw-rw-r-- 1 boinc boinc      6556 Jan 16 14:38 init_data.xml
[2026-01-16 16:08:52] -rw-rw-r-- 1 boinc boinc         0 Jan 16 14:38 boinc_setup_complete
[2026-01-16 16:08:52] -rw-rw-r-- 1 boinc boinc         0 Jan 16 14:38 boinc_lockfile
[2026-01-16 16:08:52] -rw-rw-r-- 1 boinc boinc      2509 Jan 16 14:38 pandaJob.out
[2026-01-16 16:08:52] -rw------- 1 boinc boinc   1004099 Jan 16 14:38 agis_schedconf.cvmfs.json
[2026-01-16 16:08:52] -rw------- 1 boinc boinc   1516246 Jan 16 14:38 agis_ddmendpoints.agis.ALL.json
[2026-01-16 16:08:52] drwx------ 5 boinc boinc      4096 Jan 16 14:38 pilot3
[2026-01-16 16:08:52] -rw------- 1 boinc boinc 150028484 Jan 16 16:06 HITS.48215263._046457.pool.root.1
[2026-01-16 16:08:52] -rw-rw-r-- 1 boinc boinc       531 Jan 16 16:06 boinc_task_state.xml
[2026-01-16 16:08:52] -rw------- 1 boinc boinc      1021 Jan 16 16:07 memory_monitor_summary.json
[2026-01-16 16:08:52] -rw------- 1 boinc boinc    399176 Jan 16 16:07 log.48215263._046457.job.log.tgz.1
[2026-01-16 16:08:52] -rw------- 1 boinc boinc      7726 Jan 16 16:07 heartbeat.json
[2026-01-16 16:08:52] -rw------- 1 boinc boinc        95 Jan 16 16:08 pilot_heartbeat.json
[2026-01-16 16:08:52] -rw-rw-r-- 1 boinc boinc        27 Jan 16 16:08 wrapper_checkpoint.txt
[2026-01-16 16:08:52] -rw-rw-r-- 1 boinc boinc      8192 Jan 16 16:08 boinc_mmap_file
[2026-01-16 16:08:52] -rw------- 1 boinc boinc      4848 Jan 16 16:08 pilotlog.txt
[2026-01-16 16:08:52] -rw------- 1 boinc boinc    749591 Jan 16 16:08 log.48215263._046457.job.log.1
[2026-01-16 16:08:52] -rw------- 1 boinc boinc       357 Jan 16 16:08 output.list
[2026-01-16 16:08:52] -rw-rw-r-- 1 boinc boinc       620 Jan 16 16:08 runtime_log
[2026-01-16 16:08:52] -rw------- 1 boinc boinc   1167360 Jan 16 16:08 result.tar.gz
[2026-01-16 16:08:52] -rw-rw-r-- 1 boinc boinc      9167 Jan 16 16:08 runtime_log.err
[2026-01-16 16:08:52] -rw------- 1 boinc boinc       651 Jan 16 16:08 D2KNDmOVU08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmyvnKDmPptegm.diag
[2026-01-16 16:08:52] -rw-rw-r-- 1 boinc boinc     22268 Jan 16 16:08 stderr.txt
[2026-01-16 16:08:52] HITS file was successfully produced:
[2026-01-16 16:08:52] -rw------- 1 boinc boinc 150028484 Jan 16 16:06 shared/HITS.pool.root.1
[2026-01-16 16:08:52]  *** Contents of shared directory: ***
[2026-01-16 16:08:52] total 728960
[2026-01-16 16:08:52] -rw-r--r-- 2 boinc boinc 594634110 Jan 16 14:38 ATLAS.root_0
[2026-01-16 16:08:52] -rw-r--r-- 2 boinc boinc     15847 Jan 16 14:38 start_atlas.sh
[2026-01-16 16:08:52] -rw-r--r-- 2 boinc boinc    592406 Jan 16 14:38 input.tar.gz
[2026-01-16 16:08:52] -rw------- 1 boinc boinc 150028484 Jan 16 16:06 HITS.pool.root.1
[2026-01-16 16:08:52] -rw------- 1 boinc boinc   1167360 Jan 16 16:08 result.tar.gz
16:08:53 (1117324): run_atlas exited; CPU time 29582.784563
16:08:53 (1117324): called boinc_finish(0)

</stderr_txt>
]]>

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