Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:22:14 (3159295): wrapper (7.7.26015): starting
16:22:14 (3159295): wrapper: running run_atlas (--nthreads 4)
[2026-01-15 16:22:14] Arguments: --nthreads 4
[2026-01-15 16:22:14] Threads: 4
[2026-01-15 16:22:14] Checking for CVMFS
[2026-01-15 16:22:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 16:22:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 16:22:14] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 16:22:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 16:22:14] 2.9.2.0 1861808 2475 96360 155177 1 57 33185980 36864000 0 130560 0 3481759 99.994 105003 13850 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-15 16:22:14] CVMFS is ok
[2026-01-15 16:22:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 16:22:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 16:22:14] Further information can be found at the LHC@home message board.
[2026-01-15 16:22:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 16:22:14] Checking for apptainer binary...
[2026-01-15 16:22:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 16:22:14] Running /usr/bin/apptainer --version
[2026-01-15 16:22:14] apptainer version 1.4.1-1.1
[2026-01-15 16:22:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 16:22:14] thA315b
[2026-01-15 16:22:14] apptainer works
[2026-01-15 16:22:14] Set ATHENA_PROC_NUMBER=4
[2026-01-15 16:22:14] Set ATHENA_CORE_NUMBER=4
[2026-01-15 16:22:14] Starting ATLAS job with PandaID=6970456304
[2026-01-15 16:22:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 17:04:30]  *** The last 200 lines of the pilot log: ***
[2026-01-15 17:04:30] 2026-01-15 16:03:46,642 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 17:04:30] 2026-01-15 16:03:46,642 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 17:04:30] 2026-01-15 16:03:46,642 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 17:04:30] 2026-01-15 16:03:46,642 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 17:04:30] 2026-01-15 16:03:46,642 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 17:04:30] 2026-01-15 16:03:46,642 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 17:04:30] 2026-01-15 16:03:46,642 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 17:04:30] 2026-01-15 16:03:46,642 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 17:04:30] 2026-01-15 16:03:46,642 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 17:04:30] 2026-01-15 16:03:46,642 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 17:04:30] 2026-01-15 16:03:46,642 | INFO     | job 6970456304 has completed (purged errors)
[2026-01-15 17:04:30] 2026-01-15 16:03:46,642 | INFO     | overall cleanup function is called
[2026-01-15 17:04:30] 2026-01-15 16:03:47,645 | INFO     | --- collectZombieJob: --- 10, [3169666]
[2026-01-15 17:04:30] 2026-01-15 16:03:47,645 | INFO     | zombie collector waiting for pid 3169666
[2026-01-15 17:04:30] 2026-01-15 16:03:47,645 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 17:04:30] 2026-01-15 16:03:47,645 | INFO     | collected zombie processes
[2026-01-15 17:04:30] 2026-01-15 16:03:47,645 | INFO     | will attempt to kill all subprocesses of pid=3169666
[2026-01-15 17:04:30] 2026-01-15 16:03:47,692 | INFO     | process IDs to be killed: [3169666] (in reverse order)
[2026-01-15 17:04:30] 2026-01-15 16:03:47,719 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 17:04:30] 2026-01-15 16:03:47,719 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 17:04:30] 2026-01-15 16:03:47,721 | INFO     | did not find any defunct processes belonging to 3169666
[2026-01-15 17:04:30] 2026-01-15 16:03:47,722 | INFO     | did not find any defunct processes belonging to 3169666
[2026-01-15 17:04:30] 2026-01-15 16:03:47,722 | INFO     | ready for new job
[2026-01-15 17:04:30] 2026-01-15 16:03:47,722 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 17:04:30] 2026-01-15 16:03:47,723 | INFO     | ***************************************
[2026-01-15 17:04:30] 2026-01-15 16:03:47,723 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 17:04:30] 2026-01-15 16:03:47,723 | INFO     | ***************************************
[2026-01-15 17:04:30] 2026-01-15 16:03:47,723 | INFO     | 
[2026-01-15 17:04:30] 2026-01-15 16:03:47,723 | INFO     | architecture information:
[2026-01-15 17:04:30] 2026-01-15 16:03:47,723 | INFO     | executing command: cat /etc/os-release
[2026-01-15 17:04:30] 2026-01-15 16:03:47,733 | INFO     | cat /etc/os-release:
[2026-01-15 17:04:30] NAME="CentOS Linux"
[2026-01-15 17:04:30] VERSION="7 (Core)"
[2026-01-15 17:04:30] ID="centos"
[2026-01-15 17:04:30] ID_LIKE="rhel fedora"
[2026-01-15 17:04:30] VERSION_ID="7"
[2026-01-15 17:04:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 17:04:30] ANSI_COLOR="0;31"
[2026-01-15 17:04:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 17:04:30] HOME_URL="https://www.centos.org/"
[2026-01-15 17:04:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 17:04:30] 
[2026-01-15 17:04:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 17:04:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 17:04:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 17:04:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 17:04:30] 
[2026-01-15 17:04:30] 2026-01-15 16:03:47,733 | INFO     | ***************************************
[2026-01-15 17:04:30] 2026-01-15 16:03:48,236 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-15 17:04:30] 2026-01-15 16:03:48,249 | INFO     | sufficient remaining disk space (325800951808 B)
[2026-01-15 17:04:30] 2026-01-15 16:03:48,249 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 17:04:30] 2026-01-15 16:03:48,249 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 17:04:30] 2026-01-15 16:03:48,249 | INFO     | update_server=False
[2026-01-15 17:04:30] 2026-01-15 16:03:48,249 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 17:04:30] 2026-01-15 16:03:48,249 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 17:04:30] 2026-01-15 16:03:48,249 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 17:04:30] 2026-01-15 16:03:48,249 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-15 17:04:30] 2026-01-15 16:03:48,250 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 17:04:30] 2026-01-15 16:03:48,250 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 17:04:30] 2026-01-15 16:03:48,250 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 17:04:30] 2026-01-15 16:03:48,381 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-15 17:04:30] 2026-01-15 16:03:48,381 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-15 17:04:30] 2026-01-15 16:03:48,381 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 17:04:30] 2026-01-15 16:03:48,381 | INFO     | will abort loop
[2026-01-15 17:04:30] 2026-01-15 16:03:48,843 | INFO     | all data control threads have been joined
[2026-01-15 17:04:30] 2026-01-15 16:03:49,253 | INFO     | [job] retrieve thread has finished
[2026-01-15 17:04:30] 2026-01-15 16:03:49,255 | INFO     | [job] queue monitor thread has finished
[2026-01-15 17:04:30] 2026-01-15 16:03:49,257 | INFO     | all job control threads have been joined
[2026-01-15 17:04:30] 2026-01-15 16:03:49,290 | INFO     | [payload] failed_post thread has finished
[2026-01-15 17:04:30] 2026-01-15 16:03:49,387 | INFO     | [job] job monitor thread has finished
[2026-01-15 17:04:30] 2026-01-15 16:03:49,652 | INFO     | all payload control threads have been joined
[2026-01-15 17:04:30] 2026-01-15 16:03:49,700 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 17:04:30] 2026-01-15 16:03:49,849 | INFO     | [data] control thread has finished
[2026-01-15 17:04:30] 2026-01-15 16:03:49,862 | INFO     | [data] copytool_in thread has finished
[2026-01-15 17:04:30] 2026-01-15 16:03:50,177 | INFO     | [job] validate thread has finished
[2026-01-15 17:04:30] 2026-01-15 16:03:50,217 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 17:04:30] 2026-01-15 16:03:50,255 | INFO     | [data] copytool_out thread has finished
[2026-01-15 17:04:30] 2026-01-15 16:03:50,262 | INFO     | [job] control thread has finished
[2026-01-15 17:04:30] 2026-01-15 16:03:50,320 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 17:04:30] 2026-01-15 16:03:50,337 | INFO     | [payload] validate_post thread has finished
[2026-01-15 17:04:30] 2026-01-15 16:03:50,532 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 17:04:30] 2026-01-15 16:03:50,658 | INFO     | [payload] control thread has finished
[2026-01-15 17:04:30] 2026-01-15 16:03:54,539 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 17:04:30] 2026-01-15 16:03:58,770 | INFO     | job.realtimelogging is not enabled
[2026-01-15 17:04:30] 2026-01-15 16:03:59,776 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 17:04:30] 2026-01-15 16:04:23,418 | INFO     | [monitor] cgroup control has ended
[2026-01-15 17:04:30] 2026-01-15 16:04:25,024 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140686435784512)>', '<ExcThread(monitor, started 140686162630400)>']
[2026-01-15 17:04:30] 2026-01-15 16:04:25,447 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 17:04:30] 2026-01-15 16:04:25,447 | INFO     | [monitor] control thread has ended
[2026-01-15 17:04:30] 2026-01-15 16:04:30,050 | INFO     | all workflow threads have been joined
[2026-01-15 17:04:30] 2026-01-15 16:04:30,050 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 17:04:30] 2026-01-15 16:04:30,050 | INFO     | traces error code: 0
[2026-01-15 17:04:30] 2026-01-15 16:04:30,050 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 17:04:30] 2026-01-15 16:04:30,104 [wrapper] ==== pilot stdout END ====
[2026-01-15 17:04:30] 2026-01-15 16:04:30,107 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 17:04:30] 2026-01-15 16:04:30,110 [wrapper] pilotpid: 3163091
[2026-01-15 17:04:30] 2026-01-15 16:04:30,112 [wrapper] Pilot exit status: 0
[2026-01-15 17:04:30] 2026-01-15 16:04:30,120 [wrapper] pandaids: 6970456304
[2026-01-15 17:04:30] 2026-01-15 16:04:30,138 [wrapper] cleanup supervisor_pilot 3176503 3163092
[2026-01-15 17:04:30] 2026-01-15 16:04:30,141 [wrapper] Test setup, not cleaning
[2026-01-15 17:04:30] 2026-01-15 16:04:30,143 [wrapper] apfmon messages muted
[2026-01-15 17:04:30] 2026-01-15 16:04:30,146 [wrapper] ==== wrapper stdout END ====
[2026-01-15 17:04:30] 2026-01-15 16:04:30,148 [wrapper] ==== wrapper stderr END ====
[2026-01-15 17:04:30]  *** Error codes and diagnostics ***
[2026-01-15 17:04:30]     "exeErrorCode": 0,
[2026-01-15 17:04:30]     "exeErrorDiag": "",
[2026-01-15 17:04:30]     "pilotErrorCode": 0,
[2026-01-15 17:04:30]     "pilotErrorDiag": "",
[2026-01-15 17:04:30]  *** Listing of results directory ***
[2026-01-15 17:04:30] total 730996
[2026-01-15 17:04:30] -rw-r--r-- 1 boinc boinc    579449 Jan 15 07:52 pilot3.tar.gz
[2026-01-15 17:04:30] -rwx------ 1 boinc boinc     36322 Jan 15 07:56 runpilot2-wrapper.sh
[2026-01-15 17:04:30] -rw-r--r-- 1 boinc boinc      5112 Jan 15 08:00 queuedata.json
[2026-01-15 17:04:30] -rw-r--r-- 1 boinc boinc       100 Jan 15 16:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 17:04:30] -rwxr-xr-x 1 boinc boinc      7986 Jan 15 16:22 run_atlas
[2026-01-15 17:04:30] -rw-r--r-- 1 boinc boinc       105 Jan 15 16:22 job.xml
[2026-01-15 17:04:30] -rw-r--r-- 2 boinc boinc 594388210 Jan 15 16:22 EVNT.32794306._001905.pool.root.1
[2026-01-15 17:04:30] -rw-r--r-- 2 boinc boinc    592401 Jan 15 16:22 input.tar.gz
[2026-01-15 17:04:30] -rw-r--r-- 2 boinc boinc     15847 Jan 15 16:22 start_atlas.sh
[2026-01-15 17:04:30] drwxrwx--x 2 boinc boinc      4096 Jan 15 16:22 shared
[2026-01-15 17:04:30] -rw-r--r-- 1 boinc boinc         0 Jan 15 16:22 boinc_setup_complete
[2026-01-15 17:04:30] -rw-r--r-- 1 boinc boinc      6443 Jan 15 16:22 init_data.xml
[2026-01-15 17:04:30] -rw-r--r-- 1 boinc boinc         0 Jan 15 16:22 boinc_lockfile
[2026-01-15 17:04:30] -rw-r--r-- 1 boinc boinc      2509 Jan 15 16:22 pandaJob.out
[2026-01-15 17:04:30] -rw------- 1 boinc boinc   1004083 Jan 15 16:22 agis_schedconf.cvmfs.json
[2026-01-15 17:04:30] -rw------- 1 boinc boinc   1516246 Jan 15 16:22 agis_ddmendpoints.agis.ALL.json
[2026-01-15 17:04:30] drwx------ 5 boinc boinc      4096 Jan 15 16:22 pilot3
[2026-01-15 17:04:30] -rw------- 1 boinc boinc 148962474 Jan 15 17:03 HITS.48215263._049094.pool.root.1
[2026-01-15 17:04:30] -rw-r--r-- 1 boinc boinc       529 Jan 15 17:03 boinc_task_state.xml
[2026-01-15 17:04:30] -rw------- 1 boinc boinc        95 Jan 15 17:03 pilot_heartbeat.json
[2026-01-15 17:04:30] -rw------- 1 boinc boinc      1021 Jan 15 17:03 memory_monitor_summary.json
[2026-01-15 17:04:30] -rw------- 1 boinc boinc    244042 Jan 15 17:03 log.48215263._049094.job.log.tgz.1
[2026-01-15 17:04:30] -rw------- 1 boinc boinc      7744 Jan 15 17:03 heartbeat.json
[2026-01-15 17:04:30] -rw-r--r-- 1 boinc boinc        26 Jan 15 17:04 wrapper_checkpoint.txt
[2026-01-15 17:04:30] -rw-r--r-- 1 boinc boinc      8192 Jan 15 17:04 boinc_mmap_file
[2026-01-15 17:04:30] -rw------- 1 boinc boinc      4814 Jan 15 17:04 pilotlog.txt
[2026-01-15 17:04:30] -rw------- 1 boinc boinc    391895 Jan 15 17:04 log.48215263._049094.job.log.1
[2026-01-15 17:04:30] -rw------- 1 boinc boinc       357 Jan 15 17:04 output.list
[2026-01-15 17:04:30] -rw-r--r-- 1 boinc boinc       620 Jan 15 17:04 runtime_log
[2026-01-15 17:04:30] -rw------- 1 boinc boinc    655360 Jan 15 17:04 result.tar.gz
[2026-01-15 17:04:30] -rw-r--r-- 1 boinc boinc      8902 Jan 15 17:04 runtime_log.err
[2026-01-15 17:04:30] -rw------- 1 boinc boinc       657 Jan 15 17:04 0bDLDmYSW08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmGQoKDmpBPwDn.diag
[2026-01-15 17:04:30] -rw-r--r-- 1 boinc boinc     12077 Jan 15 17:04 stderr.txt
[2026-01-15 17:04:30] HITS file was successfully produced:
[2026-01-15 17:04:30] -rw------- 1 boinc boinc 148962474 Jan 15 17:03 shared/HITS.pool.root.1
[2026-01-15 17:04:30]  *** Contents of shared directory: ***
[2026-01-15 17:04:30] total 727176
[2026-01-15 17:04:30] -rw-r--r-- 2 boinc boinc 594388210 Jan 15 16:22 ATLAS.root_0
[2026-01-15 17:04:30] -rw-r--r-- 2 boinc boinc    592401 Jan 15 16:22 input.tar.gz
[2026-01-15 17:04:30] -rw-r--r-- 2 boinc boinc     15847 Jan 15 16:22 start_atlas.sh
[2026-01-15 17:04:30] -rw------- 1 boinc boinc 148962474 Jan 15 17:03 HITS.pool.root.1
[2026-01-15 17:04:30] -rw------- 1 boinc boinc    655360 Jan 15 17:04 result.tar.gz
17:04:31 (3159295): run_atlas exited; CPU time 8950.515094
17:04:31 (3159295): called boinc_finish(0)

</stderr_txt>
]]>

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